View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9737_low_12 (Length: 380)
Name: NF9737_low_12
Description: NF9737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9737_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 5 - 364
Target Start/End: Complemental strand, 36746836 - 36746469
Alignment:
| Q |
5 |
agtttggtgttagtcccacattactcagattctcaggctgttgaatgtataaata--------tgtttgaatacgtttatctacattttatgtaattgca |
96 |
Q |
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| T |
36746836 |
agtttgttgttagttccacattgctcagattctcaggctgtcgaatgtataaataattaaatatgtttgaatacgtttatctacattttatgtaattgca |
36746737 |
T |
|
| Q |
97 |
ttacatctcttcaatttactgtgttgaaattctatgtacatttgggtgcaatagagatgatcttgattttaatgattgcatggtgataattgataagatg |
196 |
Q |
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| T |
36746736 |
ttacatctcttcaatttactgtgttgaaattctatgtacatttgggtgcaatagagatgatcttgattttaatgattgcatggtgataattgataagatg |
36746637 |
T |
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| Q |
197 |
caaaattaagaggaaatacttaactatgataaatcacatttatttgatcataaacaggacattcatgcataaataaaccaatgttcatctatgcatgtgt |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36746636 |
caaaattaagaggaaatacttaactatgataaatcacacttatttgatcataaacaggacattcatgcataaataaaccaatgttcatctatgcatgtgt |
36746537 |
T |
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| Q |
297 |
tatttgaggttacagcaaaagaaaaccagactctagaacaccaaaatacaacatttgattaacaaaca |
364 |
Q |
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| T |
36746536 |
tatttgaggttacagaaaaagaaaaccagactctagaacaccaaaatacaacatttgattaacaaaca |
36746469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 11784993 - 11785054
Alignment:
| Q |
5 |
agtttggtgttagtcccacattactcagattctcaggctgttgaatgtataaatatgtttga |
66 |
Q |
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| T |
11784993 |
agtttgttgttagtcccacattactcaggttctcggactgttgagtgtataaatatgtttga |
11785054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 53089882 - 53089821
Alignment:
| Q |
5 |
agtttggtgttagtcccacattactcagattctcaggctgttgaatgtataaatatgtttga |
66 |
Q |
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|||||| |||||||||||| |||||||| ||| ||| ||||| | ||||||||||||||||| |
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| T |
53089882 |
agtttgttgttagtcccactttactcaggttcccagactgttaagtgtataaatatgtttga |
53089821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 35536884 - 35536826
Alignment:
| Q |
5 |
agtttggtgttagtcccacattactcagattctcaggctgttgaatgtataaatatgtt |
63 |
Q |
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| T |
35536884 |
agtttgttgttagttccacattacttaggttctcaaactgttgaatgtataaatatgtt |
35536826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 27134292 - 27134353
Alignment:
| Q |
5 |
agtttggtgttagtcccacattactcagattctcaggctgttgaatgtataaatatgtttga |
66 |
Q |
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|||||| |||||||| |||||| || |||||||| | |||||| ||||||||||||||||| |
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| T |
27134292 |
agtttgttgttagtctcacattgcttagattctcgagttgttgagtgtataaatatgtttga |
27134353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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