View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9737_low_13 (Length: 367)
Name: NF9737_low_13
Description: NF9737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9737_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 154 - 357
Target Start/End: Original strand, 1101886 - 1102091
Alignment:
| Q |
154 |
ctttcaagttttgcatctatccaatgcatgacacaagattttgaataacttaattatgtgaagttgatttttcaagtattttgaagttataggg--tata |
251 |
Q |
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| T |
1101886 |
ctttcaagttttgcatctatccaatgcatgacacaagattttgaataacttaattatgtgaagttgatttttcaagtattttgacgttatagggggtata |
1101985 |
T |
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| Q |
252 |
atgagacaattatcgttgagttgctaaacgtaaattaagaagagaattaaataatatggggattttgatgcggtgagtttgagtacatgaaagcatctcg |
351 |
Q |
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| T |
1101986 |
atgaaacaattatcgttgagttgctaaacgtaaattaagaagagaattaaataatatgggaattttgatgcggtgagtttgagtacatgaaagcatctag |
1102085 |
T |
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| Q |
352 |
ttcatc |
357 |
Q |
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|||||| |
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| T |
1102086 |
ttcatc |
1102091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 19 - 120
Target Start/End: Original strand, 1101601 - 1101702
Alignment:
| Q |
19 |
tccaaacactcatgcatacaaacaataagccatcaaaacattgatattgtacgatatcacttctctttcctcaattaaaatttagaaatttttatttaga |
118 |
Q |
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| T |
1101601 |
tccaaacactcatgcatacaaacaataagccatcaaaacattgatattgtacgatatcacttctctttcctcaattaaaatttagaaatttttatttaga |
1101700 |
T |
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| Q |
119 |
tg |
120 |
Q |
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|| |
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| T |
1101701 |
tg |
1101702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 8e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 230 - 357
Target Start/End: Complemental strand, 39060974 - 39060847
Alignment:
| Q |
230 |
tattttgaagttatagggtataatgagacaattatcgttgagttgctaaacgtaaattaagaagagaattaaataatatggggattttgatgcggtgagt |
329 |
Q |
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| T |
39060974 |
tattttgaagttgtaggatataatgagacaattatcgttgagttgataaacgtaaattaagaagagaattaaataatatgagaattttgctgttatgagt |
39060875 |
T |
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| Q |
330 |
ttgagtacatgaaagcatctcgttcatc |
357 |
Q |
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| T |
39060874 |
ttgagtacatgaaaacatctcggtcatc |
39060847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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