View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9737_low_14 (Length: 354)
Name: NF9737_low_14
Description: NF9737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9737_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 52170588 - 52170234
Alignment:
| Q |
1 |
ctcaatattttttatcaagtgagaaaaaagaattcaccctcacccacagttgctaaaaaa-caagagtagcccaaatgctacattacaacnnnnnnn-tt |
98 |
Q |
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| T |
52170588 |
ctcaatattttttatcaagtgagaaaaaagaattcaccctcacccacaattgctaaaaaaacgagagtagcccaaatgctacattacaacaaaaaaaatt |
52170489 |
T |
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| Q |
99 |
aaatattgttgtttaatgaaatggtgggtctcacatttactgattgaaaatctagcaaaaggtcaccagcaagttacaggtgagagatctaaaacattga |
198 |
Q |
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| T |
52170488 |
aaatattgttgtttaatgaaatggtgggtctcacatttactaattgagaatctagcaaaaggtcaccagcaaattacaggtgagagatctaaaccattga |
52170389 |
T |
|
| Q |
199 |
tatataataatagtatatcaacggtctacaacaactgtcatcaacaaat------------caatgtacttgtgtatcatgcacaaatcttattgttgtg |
286 |
Q |
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| T |
52170388 |
tatatagtaatagtatatcaacggtctacaacaactgtcatcaacaaatcaatcaacaaatcaatgtacttatgtatcatgcacaaatcttattgttgtg |
52170289 |
T |
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| Q |
287 |
catagcaaacgccacctattttcctgtaataatttgttgcatgtgccctgtctct |
341 |
Q |
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| T |
52170288 |
catagaaaacgccacctattttcctgtaataatttgttacatgtgccctgtctct |
52170234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 99 - 302
Target Start/End: Complemental strand, 2396760 - 2396557
Alignment:
| Q |
99 |
aaatattgttgtttaatgaaatggtgggtctcacatttactgattgaaaatctagcaaaaggtcaccagcaagttacaggtgagagatctaaaacattga |
198 |
Q |
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| T |
2396760 |
aaatattgttgtttaatgaaatggtgggcctcacatttactgtttgagaatctagcaaaaggtcaccagaaagttccaggtgagagatctaaaccattga |
2396661 |
T |
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| Q |
199 |
tatataataatagtatatcaacggtctacaacaactgtcatcaacaaatcaatgtacttgtgtatcatgcacaaatcttattgttgtgcatagcaaacgc |
298 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2396660 |
tatataataatagtatatcagcggtctacaacaactgtcatcaacaaatcagtgtacttgtgtatcatgcacaaatcttattgttgtgcatagcaaacgc |
2396561 |
T |
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| Q |
299 |
cacc |
302 |
Q |
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|||| |
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| T |
2396560 |
cacc |
2396557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 2397412 - 2397363
Alignment:
| Q |
1 |
ctcaatattttttatcaagtgagaa--aaaagaattcaccctcacccaca |
48 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2397412 |
ctcaatattttttatcaagtgagaaaaaaaagaattcaccctcacccaca |
2397363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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