View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9737_low_15 (Length: 348)

Name: NF9737_low_15
Description: NF9737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9737_low_15
NF9737_low_15
[»] scaffold0256 (1 HSPs)
scaffold0256 (7-340)||(10980-11312)
[»] chr2 (2 HSPs)
chr2 (7-321)||(21629165-21629478)
chr2 (16-333)||(233460-233779)
[»] chr6 (7 HSPs)
chr6 (7-241)||(16580408-16580643)
chr6 (7-241)||(16614737-16614972)
chr6 (7-305)||(16977307-16977607)
chr6 (7-241)||(16874268-16874504)
chr6 (7-80)||(16572422-16572495)
chr6 (127-241)||(16572510-16572624)
chr6 (7-64)||(16691581-16691638)
[»] chr7 (1 HSPs)
chr7 (16-330)||(48298579-48298895)
[»] chr1 (1 HSPs)
chr1 (16-333)||(7391716-7392035)


Alignment Details
Target: scaffold0256 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 7 - 340
Target Start/End: Complemental strand, 11312 - 10980
Alignment:
Q  7 gaagcataggatcatcagtaacaatttccttcgctttctcgagatcagtgacaaaaaa-cattcaacggtcctcctgaaatgttaaggatcatgtcatgg 105  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  11312 gaagcataagatcatcagtaacaatttccttcgcttgctcgagatcagtgacaaaaaaacattcaacggtcctcctgaaatgttaaggatcatgtcatgg 11213  T
Q  106 ttgtcacaaggcttcttatcaatggagacttccacaatgcttttgactatattgcatctcttaacgtatggaaatttgtgaaaaaccacgactccacgct 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||| |||||||||||||||  |||    
T  11212 ttgtcacaaggcttcttatcaatggagacttccacaatgcttttgactatattgcatctcttggcatatggaaatttgtaaaaaaccacgactccgtgct 11113  T
Q  206 cgaaatgctgaaggacaaaatcaaagaggtggcacttaggacatacttatttacctcctcttcatcatacgattcttttagcatggatcagctagaaaat 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||| |||||||||||||||||    
T  11112 cgaaatgctgaaggacaaaatcaaagaggtggcacttaggacatacttatttacctcctcttcatcatacgattc--tgagcgtggatcagctagaaaat 11015  T
Q  306 tatttcgacctctctcctcttcgtgttcttgctat 340  Q
    |||||||||||||||||||||||||||| ||||||    
T  11014 tatttcgacctctctcctcttcgtgttcatgctat 10980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 7 - 321
Target Start/End: Original strand, 21629165 - 21629478
Alignment:
Q  7 gaagcataggatcatcagtaacaatttccttcgctttctcgagatcagtgacaaaa-aacattcaacggtcctcctgaaa-tgttaaggatcatgtcatg 104  Q
    ||||| || |||||||||||| ||||||| |||||| |||||||| |||||||||| ||||||||||||||||||||||| ||||| ||||||||| |||    
T  21629165 gaagcgtaagatcatcagtaagaatttccatcgcttgctcgagataagtgacaaaagaacattcaacggtcctcctgaaaatgttagggatcatgttatg 21629264  T
Q  105 gttgtcacaaggcttcttatcaatggagacttccacaatgcttttgactatattgcatctcttaacgtatggaaatttgtgaaaaaccacgactccacgc 204  Q
    | ||||||||| |||||||| ||||||||||||| ||| || |||||| |||||||||||||  | |||||||||||||||||| ||   ||||||  ||    
T  21629265 gctgtcacaagacttcttattaatggagacttcctcaaggcctttgacaatattgcatctctcgatgtatggaaatttgtgaaacactgagactccgtgc 21629364  T
Q  205 tcgaaatgctgaaggacaaaatcaaagaggtggcacttaggacatacttatttacctcctcttcatcatacgattcttttagcatggatcagctagaaaa 304  Q
    | ||||   |||||||||||||||| |||| |||||||||||||||| || |||||| |||||||||||| || ||||| |||||||||||||| | |||    
T  21629365 tagaaa---tgaaggacaaaatcaaggaggaggcacttaggacatacctaattaccttctcttcatcatatgaatctttgagcatggatcagctcgcaaa 21629461  T
Q  305 ttatttcgacctctctc 321  Q
      |||||||||||||||    
T  21629462 aaatttcgacctctctc 21629478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 16 - 333
Target Start/End: Complemental strand, 233779 - 233460
Alignment:
Q  16 gatcatcagtaacaatttccttcgctttctcgagatcagtgacaaa-aaacattcaacggtcctcctgaaa-tgttaaggatcatgtcatggttgtcaca 113  Q
    |||||||||||| |||||||  ||||| || ||| ||||||| ||| ||||||||| |||||||||||||| ||| | ||||||||| |||| || ||||    
T  233779 gatcatcagtaagaatttccgccgcttgcttgaggtcagtgagaaacaaacattcaccggtcctcctgaaactgtcagggatcatgttatggctgccaca 233680  T
Q  114 aggcttcttatcaatggagacttccacaatgcttttgactatattgcatctcttaacgtatggaaatttgtgaaaaaccacgactccacgctcgaaatgc 213  Q
    ||| ||||||| |||||||| ||||| || || ||||||  ||||||||||||| | || ||||||||||||||||| |  ||| ||  ||| |||||||    
T  233679 agggttcttattaatggagatttccagaaggcctttgacattattgcatctcttgaggtttggaaatttgtgaaaaatcgtgacaccgtgctagaaatgc 233580  T
Q  214 tgaaggacaaaatcaaagaggtggcacttaggacatacttatttacctcctcttcatcatacgattcttttagcatggatcagctagaaaattatttcga 313  Q
    |||||||||||||||| |||| ||| |||||||||||| ||||||| | |||||||||||| |||||||| ||  ||||||||||   ||||| ||||||    
T  233579 tgaaggacaaaatcaaggaggaggcgcttaggacatacctatttactttctcttcatcatatgattctttgagtgtggatcagctcacaaattttttcga 233480  T
Q  314 cctctctcctcttcgtgttc 333  Q
     ||||||| || ||||||||    
T  233479 tctctctcttcctcgtgttc 233460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 120; Significance: 2e-61; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 7 - 241
Target Start/End: Original strand, 16580408 - 16580643
Alignment:
Q  7 gaagcataggatcatcagtaacaatttccttcgctttctcgagatcagtgacaaaaaacattcaacggtcctcctgaaa-tgttaaggatcatgtcatgg 105  Q
    ||||| || |||||||||||| ||||||  |||||| ||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||    
T  16580408 gaagcgtaagatcatcagtaagaatttcagtcgcttgctcgagatcagtgacaaaaaacattcaactgtcctcccgaaaatgttaaggatcatgtcatgg 16580507  T
Q  106 ttgtcacaaggcttcttatcaatggagacttccacaatgcttttgactatattgcatctcttaacgtatggaaatttgtgaaaaaccacgactccacgct 205  Q
    ||||||||| ||||||||||||||||||||||||||| |||| |||| |||||||||||||| | |||||| ||||||||||||| |   || ||  |||    
T  16580508 ttgtcacaatgcttcttatcaatggagacttccacaaggcttgtgacaatattgcatctcttgatgtatggtaatttgtgaaaaatcgaaacgccgtgct 16580607  T
Q  206 cgaaatgctgaaggacaaaatcaaagaggtggcact 241  Q
     |||||| |||||||||||| ||| |||| ||||||    
T  16580608 agaaatgttgaaggacaaaaccaaggaggaggcact 16580643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 7 - 241
Target Start/End: Complemental strand, 16614972 - 16614737
Alignment:
Q  7 gaagcataggatcatcagtaacaatttccttcgctttctcgagatcagtgacaaaaaacattcaacggtcctcctgaaa-tgttaaggatcatgtcatgg 105  Q
    ||||| || |||||||||||| ||||||  |||||| ||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||    
T  16614972 gaagcgtaagatcatcagtaagaatttcagtcgcttgctcgagatcagtgacaaaaaacattcaactgtcctcccgaaaatgttaaggatcatgtcatgg 16614873  T
Q  106 ttgtcacaaggcttcttatcaatggagacttccacaatgcttttgactatattgcatctcttaacgtatggaaatttgtgaaaaaccacgactccacgct 205  Q
    ||||||||| ||||||||||||||||||||||||||| |||| |||| |||||||||||||| | |||||| ||||||||||||| |   || ||  |||    
T  16614872 ttgtcacaatgcttcttatcaatggagacttccacaaggcttgtgacaatattgcatctcttgatgtatggtaatttgtgaaaaatcgaaacgccgtgct 16614773  T
Q  206 cgaaatgctgaaggacaaaatcaaagaggtggcact 241  Q
     |||||| |||||||||||| ||| |||| ||||||    
T  16614772 agaaatgttgaaggacaaaaccaaggaggaggcact 16614737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 7 - 305
Target Start/End: Complemental strand, 16977607 - 16977307
Alignment:
Q  7 gaagcataggatcatcagtaacaatttccttcgctttctcgagatcagtgacaaaaaacattcaacggtcctcctgaaa-tgttaaggatcatgtcatgg 105  Q
    |||||||| |||||||| ||  ||||||| | ||||| ||||||||||||| ||| || ||||| |||||  || |||| ||||||||||||||||||||    
T  16977607 gaagcataagatcatcaatacgaatttccattgctttttcgagatcagtgataaacaaaattcagcggtctaccagaaaatgttaaggatcatgtcatgg 16977508  T
Q  106 ttgtcacaaggcttcttatcaatggagacttccacaatgcttttgactatattgcatctcttaacgtatggaaatttgtgaaaaaccacgactccacgct 205  Q
    |||| |||||||||||||| ||||| ||||| ||||| ||||||||| |||||||||||||| |||||||||||||||||||||| |  ||||||  | |    
T  16977507 ttgtaacaaggcttcttatgaatggggacttgcacaaggcttttgacaatattgcatctcttgacgtatggaaatttgtgaaaaaacgagactccctgtt 16977408  T
Q  206 cgaaatgctgaa-ggacaaaatcaaagaggtggcacttaggacatacttatttacctcctcttcatcatacgattcttttagcatggatcagctagaaaa 304  Q
     || |||||||| ||| |||||||| |||| | |||||||||||||| ||||||||||| |||||||| | |||||||  ||  |||||||||||| |||    
T  16977407 agagatgctgaagggaaaaaatcaaggaggagacacttaggacatacctatttacctccccttcatcacatgattcttagagagtggatcagctagcaaa 16977308  T
Q  305 t 305  Q
    |    
T  16977307 t 16977307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 7 - 241
Target Start/End: Original strand, 16874268 - 16874504
Alignment:
Q  7 gaagcataggatcatcagtaacaatttccttcgctttctcgagatcagtgacaaaaaacattcaacggtcctcctgaaa-tgttaaggatcatgtcatgg 105  Q
    ||||| || |||||||||||| ||||||   | ||| ||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||    
T  16874268 gaagcgtaagatcatcagtaagaatttcagccacttgctcgagatcagtgacaaaaaacattcaacggtcctcccgaaaatgttatggatcatgtcatgg 16874367  T
Q  106 ttgtcacaaggcttcttatcaatggagacttccacaatgcttttgactatattgcatctc-ttaacgtatggaaatttgtgaaaaaccacgactccacgc 204  Q
    ||||||||| ||||||||||||||||||||||||||| |||| ||||  ||||||||||| || | |||||||||||||||||||| || ||| ||  ||    
T  16874368 ttgtcacaatgcttcttatcaatggagacttccacaaggcttgtgacattattgcatctctttgatgtatggaaatttgtgaaaaatcaagacgccgtgc 16874467  T
Q  205 tcgaaatgctgaaggacaaaatcaaagaggtggcact 241  Q
    | |||||| |||||||||||| ||| |||| ||||||    
T  16874468 tggaaatgttgaaggacaaaaccaaggaggaggcact 16874504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 7 - 80
Target Start/End: Original strand, 16572422 - 16572495
Alignment:
Q  7 gaagcataggatcatcagtaacaatttccttcgctttctcgagatcagtgacaaaaaacattcaacggtcctcc 80  Q
    ||||| || |||||||||||| ||||||  |||||| |||||||||||||||||||||||||||||||| ||||    
T  16572422 gaagcgtaagatcatcagtaagaatttcagtcgcttgctcgagatcagtgacaaaaaacattcaacggttctcc 16572495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 127 - 241
Target Start/End: Original strand, 16572510 - 16572624
Alignment:
Q  127 atggagacttccacaatgcttttgactatattgcatctcttaacgtatggaaatttgtgaaaaaccacgactccacgctcgaaatgctgaaggacaaaat 226  Q
    ||||||| |||||||| |||||||||  ||||||||||||| | |||||||||||||||||||| |  ||  ||  ||| |||||| ||||||||||||     
T  16572510 atggagaattccacaaggcttttgacattattgcatctcttgatgtatggaaatttgtgaaaaatcgagatgccgtgctagaaatgttgaaggacaaaac 16572609  T
Q  227 caaagaggtggcact 241  Q
    ||| |||| ||||||    
T  16572610 caaggaggaggcact 16572624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 16691638 - 16691581
Alignment:
Q  7 gaagcataggatcatcagtaacaatttccttcgctttctcgagatcagtgacaaaaaa 64  Q
    |||||||| |||||||||||| ||||||| |||||| ||||||||| |||||||||||    
T  16691638 gaagcataagatcatcagtaagaatttccatcgcttgctcgagatcggtgacaaaaaa 16691581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 16 - 330
Target Start/End: Complemental strand, 48298895 - 48298579
Alignment:
Q  16 gatcatcagtaacaatttccttcgctttctcgagatcagtgacaaa-aaacattcaacggtcctcctgaaa-tgttaaggatcatgtcatggttgtcaca 113  Q
    |||||||||||| |||||||  ||||| || ||| ||||||| ||| ||||||||| |||||||||||||| ||| | ||||||||| |||| || ||||    
T  48298895 gatcatcagtaagaatttccgccgcttgcttgaggtcagtgagaaacaaacattcaccggtcctcctgaaactgtcagggatcatgttatggctgccaca 48298796  T
Q  114 aggcttcttatcaatggagacttccacaatgcttttgactatattgcatctcttaacgtatggaaatttgtgaaaaaccacgactccacgctcgaaatgc 213  Q
    ||| ||||||| ||||| || ||||| || || ||||||  ||||||||||||| | || ||||||||||||||||| |  ||| ||  ||| |||||||    
T  48298795 agggttcttattaatggcgatttccagaaggcctttgacattattgcatctcttgaggtgtggaaatttgtgaaaaatcgtgacaccgtgctagaaatgc 48298696  T
Q  214 tgaaggacaaaatcaaagaggtggcacttaggacatacttatttacctcctcttcatcatacgattcttttagcatggatcagctagaaaattatttcga 313  Q
    |||||||||||||||| |||| ||| |||||||||||| ||||||||| |||||||||||| |||||||| ||| ||||||||||   ||||| ||||||    
T  48298695 tgaaggacaaaatcaaggaggaggcgcttaggacatacctatttaccttctcttcatcatatgattctttgagcgtggatcagctcacaaattttttcga 48298596  T
Q  314 cctctctcctcttcgtg 330  Q
     ||||||| || |||||    
T  48298595 tctctctcttcctcgtg 48298579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 16 - 333
Target Start/End: Original strand, 7391716 - 7392035
Alignment:
Q  16 gatcatcagtaacaatttccttcgctttctcgagatcagtgacaaa-aaacattcaacggtcctcctgaaa-tgttaaggatcatgtcatggttgtcaca 113  Q
    |||||||||||| |||||||  ||||| || ||| |||| || ||| ||||||||| |||||||||||||| ||| | ||||||||| |||| || ||||    
T  7391716 gatcatcagtaagaatttccgacgcttgcttgaggtcagcgagaaacaaacattcaccggtcctcctgaaactgtcagggatcatgttatggctgccaca 7391815  T
Q  114 aggcttcttatcaatggagacttccacaatgcttttgactatattgcatctcttaacgtatggaaatttgtgaaaaaccacgactccacgctcgaaatgc 213  Q
    ||| ||||||| |||||||| ||||| || || ||||||  ||||||||||||| |||| ||||||||||||||||| |  ||| ||  ||| |||||||    
T  7391816 agggttcttattaatggagatttccagaaggcctttgacattattgcatctcttgacgtctggaaatttgtgaaaaatcgagacgccgtgctagaaatgc 7391915  T
Q  214 tgaaggacaaaatcaaagaggtggcacttaggacatacttatttacctcctcttcatcatacgattcttttagcatggatcagctagaaaattatttcga 313  Q
    | |||||||||||||| || | |||||||||||||||| ||||||||| |||||||||||| |||||||| ||| ||| ||||||   ||||| ||||||    
T  7391916 ttaaggacaaaatcaaggaagaggcacttaggacatacctatttaccttctcttcatcatatgattctttgagcgtggttcagctcacaaattttttcga 7392015  T
Q  314 cctctctcctcttcgtgttc 333  Q
     ||||||| || ||||||||    
T  7392016 tctctctcttcctcgtgttc 7392035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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