View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9737_low_16 (Length: 341)
Name: NF9737_low_16
Description: NF9737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9737_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 29434840 - 29434519
Alignment:
| Q |
1 |
ataaaatacctgtttcatatgtataaattcagtgcttatcgtacatgaacttatgtataagttgtctgtataatcaaagaggaaacgaaggcataatcta |
100 |
Q |
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| T |
29434840 |
ataaaatacctgtttcatatgtataaattcagtgcttatcgtacatgaacttatgtataagttgtctgtataatcaaagaggaaacgaaggcataatcca |
29434741 |
T |
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| Q |
101 |
catacgccaagagttatagcgtatgacaatgagctatctggaagaacttgtgaaaaa-gctgaaaatgatttaaaaacttaacctaagctattttcagag |
199 |
Q |
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| T |
29434740 |
catatgccaagagttatagcgtatgacaatgagctatctggaagaacttgtgaaaaaagctgaaaatgttttaaaaacttaacctaagctattttcagat |
29434641 |
T |
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| Q |
200 |
gcttttccaaaaatttacactagtacttatgtcatagaacttgtttggatgcacaatttaattaagtgcttatagaaaactcagattgctgacttaaata |
299 |
Q |
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| T |
29434640 |
gcttttccaaaaatttacactagtacttatgtcatagaacttgtttggatgcacaatttaattaagtgcttatagaaaactcagattgctgacttaaata |
29434541 |
T |
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| Q |
300 |
attatttaatttcttgaatcaa |
321 |
Q |
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| T |
29434540 |
tttatttaatttcttgaatcaa |
29434519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 56 - 236
Target Start/End: Complemental strand, 29467968 - 29467786
Alignment:
| Q |
56 |
tataagttgtctgtataatcaaagaggaaacgaaggcataatctacatacgccaagagttatagcgtatgacaatgagctatctggaagaacttgtgaaa |
155 |
Q |
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| T |
29467968 |
tataagttggttctataatcaaagttgaaatgaaggtaaactctgcatatgctaaaagttataacttatgacactgagctatctgaaagagcttatgaaa |
29467869 |
T |
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| Q |
156 |
a--agctgaaaatgatttaaaaacttaacctaagctattttcagaggcttttccaaaaatttacactagtacttatgtcatag |
236 |
Q |
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| T |
29467868 |
atgaactgaaaataatatttagacttagcataagctattttcagaggctcttgcaaagacttatacaagtgcttatggcatag |
29467786 |
T |
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