View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9737_low_23 (Length: 267)

Name: NF9737_low_23
Description: NF9737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9737_low_23
NF9737_low_23
[»] chr3 (11 HSPs)
chr3 (26-156)||(6164315-6164445)
chr3 (42-156)||(13282986-13283100)
chr3 (23-156)||(6138998-6139133)
chr3 (82-156)||(6234104-6234178)
chr3 (87-157)||(6241889-6241959)
chr3 (89-156)||(6255118-6255185)
chr3 (213-250)||(6262404-6262441)
chr3 (213-250)||(9825145-9825182)
chr3 (213-250)||(6271844-6271881)
chr3 (87-127)||(6859282-6859322)
chr3 (87-127)||(7746936-7746976)
[»] chr7 (1 HSPs)
chr7 (213-263)||(35681680-35681730)


Alignment Details
Target: chr3 (Bit Score: 107; Significance: 1e-53; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 26 - 156
Target Start/End: Complemental strand, 6164445 - 6164315
Alignment:
Q  26 tcctgtattgttgattatttcacttcataaatcttgaaatctatggcctaataatgaaacaactcaagatatatgcattgattatatctctctcgagcca 125  Q
    |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  6164445 tcctgtcttgttgattatttcacttcataaatcttgaaatcaatggcctaataatgaaacaactcaagatatatgcattgatcatatctctcttgagcca 6164346  T
Q  126 ctttacgaaatccctccgacttatgtgtact 156  Q
    | |||||||||||||| ||||||||||||||    
T  6164345 cattacgaaatccctctgacttatgtgtact 6164315  T

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Target: chr3; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 42 - 156
Target Start/End: Original strand, 13282986 - 13283100
Alignment:
Q  42 atttcacttcataaatcttgaaatctatggcctaataatgaaacaactcaagatatatgcattgattatatctctctcgagccactttacgaaatccctc 141  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  13282986 atttcacttcataaatcttgaaatctatggcctaataataaaacaactcaagatatatgcattgatcatatctctctcgagccactttacgaaatccctc 13283085  T
Q  142 cgacttatgtgtact 156  Q
     |||||||| |||||    
T  13283086 tgacttatgcgtact 13283100  T

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Target: chr3; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 23 - 156
Target Start/End: Complemental strand, 6139133 - 6138998
Alignment:
Q  23 tcttcctgtattgttgattatttcacttcataaatcttgaaatctatggcctaataatgaaacaactcaagatatatgcattgattatatctc--tctcg 120  Q
    ||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  |||||    
T  6139133 tcttcctgtcttgttgattatttcaatttataaatcttgaaatctatggcctaataatgaaacaactcaagatatatgcattgatcatatctctctctcg 6139034  T
Q  121 agccactttacgaaatccctccgacttatgtgtact 156  Q
    ||||||||||||||||||||  ||| ||||||||||    
T  6139033 agccactttacgaaatccctttgacctatgtgtact 6138998  T

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Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 82 - 156
Target Start/End: Complemental strand, 6234178 - 6234104
Alignment:
Q  82 aaacaactcaagatatatgcattgattatatctctctcgagccactttacgaaatccctccgacttatgtgtact 156  Q
    |||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||| ||| ||||||||||    
T  6234178 aaacaactcaagatatatgcattgatcatatatctctcgagacactttacgaaatccctctgacctatgtgtact 6234104  T

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Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 87 - 157
Target Start/End: Complemental strand, 6241959 - 6241889
Alignment:
Q  87 actcaagatatatgcattgattatatctctctcgagccactttacgaaatccctccgacttatgtgtactt 157  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||| |||||||||||    
T  6241959 actcaagatatatgcattgatcatatctctctcgagccactttacggaatccctctgacctatgtgtactt 6241889  T

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Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 89 - 156
Target Start/End: Complemental strand, 6255185 - 6255118
Alignment:
Q  89 tcaagatatatgcattgattatatctctctcgagccactttacgaaatccctccgacttatgtgtact 156  Q
    |||||||||| |||||||| |||||||||||||| |||||||||||||||||| ||| | ||||||||    
T  6255185 tcaagatataagcattgatcatatctctctcgagtcactttacgaaatccctctgacctgtgtgtact 6255118  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 250
Target Start/End: Complemental strand, 6262441 - 6262404
Alignment:
Q  213 tgtatggaagatcatctagtcacctctgtggtgccaaa 250  Q
    ||||||||||||||||||||||||||||||||||||||    
T  6262441 tgtatggaagatcatctagtcacctctgtggtgccaaa 6262404  T

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Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 250
Target Start/End: Original strand, 9825145 - 9825182
Alignment:
Q  213 tgtatggaagatcatctagtcacctctgtggtgccaaa 250  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9825145 tgtatggaagatcatctagtcacctctgtggtgccaaa 9825182  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 250
Target Start/End: Complemental strand, 6271881 - 6271844
Alignment:
Q  213 tgtatggaagatcatctagtcacctctgtggtgccaaa 250  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  6271881 tgtatggaagagcatctagtcacctctgtggtgccaaa 6271844  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 127
Target Start/End: Original strand, 6859282 - 6859322
Alignment:
Q  87 actcaagatatatgcattgattatatctctctcgagccact 127  Q
    ||||||||||||||||||||| || |||||||| |||||||    
T  6859282 actcaagatatatgcattgatcatgtctctctctagccact 6859322  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 127
Target Start/End: Complemental strand, 7746976 - 7746936
Alignment:
Q  87 actcaagatatatgcattgattatatctctctcgagccact 127  Q
    ||||||| |||||| |||||| |||||||||||||||||||    
T  7746976 actcaaggtatatgtattgatcatatctctctcgagccact 7746936  T

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Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 213 - 263
Target Start/End: Original strand, 35681680 - 35681730
Alignment:
Q  213 tgtatggaagatcatctagtcacctctgtggtgccaaaataacaccaaact 263  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  35681680 tgtatggaagatcatctagtcccctctgtggtgccaaaataacaccaaact 35681730  T

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