View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9737_low_24 (Length: 264)

Name: NF9737_low_24
Description: NF9737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9737_low_24
NF9737_low_24
[»] chr4 (6 HSPs)
chr4 (1-107)||(45569668-45569774)
chr4 (107-226)||(45094818-45094937)
chr4 (104-213)||(44668012-44668121)
chr4 (104-228)||(44687338-44687462)
chr4 (138-195)||(44642503-44642560)
chr4 (21-88)||(45175587-45175653)
[»] chr7 (2 HSPs)
chr7 (107-228)||(9798218-9798334)
chr7 (21-88)||(9798150-9798216)
[»] chr5 (1 HSPs)
chr5 (135-181)||(8831350-8831396)
[»] chr1 (2 HSPs)
chr1 (135-182)||(19566378-19566425)
chr1 (137-182)||(23684849-23684894)


Alignment Details
Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 45569668 - 45569774
Alignment:
Q  1 tttgctatcattgattgctcccaaatttccacatcctactaccagcaagtaatttatgcagcgaactattacataaaaagcagaagccagtggacttcac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45569668 tttgctatcattgattgctcccaaatttccacatcctactaccagcaagtaatttatgcagcgaactattacataaaaagcagaagccagtggacttcac 45569767  T
Q  101 actatct 107  Q
    |||||||    
T  45569768 actatct 45569774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 107 - 226
Target Start/End: Original strand, 45094818 - 45094937
Alignment:
Q  107 taagttgttcttcagtgacaggatcattgcaaatctactacctagcatctcattattaactaagctacattgttgcagaaatacttaatttatctaacca 206  Q
    ||||||||||||||||  ||||||||  |||||||||||||||| |||||||||||||||| | |  |||||||| ||||  ||||||||| |||||| |    
T  45094818 taagttgttcttcagttgcaggatcaaagcaaatctactacctaccatctcattattaacttatccgcattgttgaagaaggacttaatttttctaacaa 45094917  T
Q  207 attgattgcgattttgataa 226  Q
    ||| |||| ||| |||||||    
T  45094918 attaattgagatgttgataa 45094937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 104 - 213
Target Start/End: Original strand, 44668012 - 44668121
Alignment:
Q  104 atctaagttgttcttcagtgacaggatcattgcaaatctactacctagcatctcattattaactaagctacattgttgcagaaatacttaatttatctaa 203  Q
    |||||||||||||||||||  ||| ||||  |||||||||| |||||||||||||||||||||| |||   ||||||| ||||| ||||| ||| |||||    
T  44668012 atctaagttgttcttcagttgcagaatcaaagcaaatctaccacctagcatctcattattaacttagccgtattgttgaagaaagacttagtttttctaa 44668111  T
Q  204 ccaattgatt 213  Q
      ||||||||    
T  44668112 taaattgatt 44668121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 104 - 228
Target Start/End: Original strand, 44687338 - 44687462
Alignment:
Q  104 atctaagttgttcttcagtgacaggatcattgcaaatctactacctagcatctcattattaactaagctacattgttgcagaaatacttaatttatctaa 203  Q
    |||||||| ||||||||||  ||| ||||  |||||||||| |||||||||||||||||||||| |||   ||||||| ||||| ||||| ||| ||||     
T  44687338 atctaagtcgttcttcagttgcagaatcaaagcaaatctaccacctagcatctcattattaacttagccgtattgttgaagaaagacttagtttttctat 44687437  T
Q  204 ccaattgattgcgattttgataatt 228  Q
      ||||||||| ||| | |||||||    
T  44687438 taaattgattgagatgtagataatt 44687462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 138 - 195
Target Start/End: Original strand, 44642503 - 44642560
Alignment:
Q  138 aatctactacctagcatctcattattaactaagctacattgttgcagaaatacttaat 195  Q
    ||||||| |||||||||||||||||||||| ||||  ||||||| ||||| |||||||    
T  44642503 aatctaccacctagcatctcattattaacttagctgtattgttgaagaaagacttaat 44642560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 45175653 - 45175587
Alignment:
Q  21 ccaaatttccacatcctactaccagcaagtaatttatgcagcgaactattacataaaaagcagaagcc 88  Q
    ||||||||||| | || |||||| |||||||||| ||||||||| |||||||| ||||||||| ||||    
T  45175653 ccaaatttccaaacccaactacccgcaagtaatt-atgcagcgatctattacacaaaaagcagcagcc 45175587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 107 - 228
Target Start/End: Original strand, 9798218 - 9798334
Alignment:
Q  107 taagttgttcttcagtgacaggatcattgcaaatctactacctagcatctcattattaactaagctacattgttgcagaaatacttaatttatctaacca 206  Q
    |||||||||||||| | |||||||||  |||||||||||| |    || ||||| |||||| ||||||||| ||| ||||| ||||||||| ||| || |    
T  9798218 taagttgttcttcaattacaggatcaaagcaaatctactaac----atatcattgttaacttagctacattcttggagaaagacttaatttttctcac-a 9798312  T
Q  207 attgattgcgattttgataatt 228  Q
    |||||||| |||||||||||||    
T  9798313 attgattgtgattttgataatt 9798334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 9798150 - 9798216
Alignment:
Q  21 ccaaatttccacatcctactaccagcaagtaatttatgcagcgaactattacataaaaagcagaagcc 88  Q
    ||||||||||| | || |||||| |||||||||| ||||||||| |||||||| ||||||||| ||||    
T  9798150 ccaaatttccaaacccaactacccgcaagtaatt-atgcagcgatctattacacaaaaagcagcagcc 9798216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 181
Target Start/End: Original strand, 8831350 - 8831396
Alignment:
Q  135 gcaaatctactacctagcatctcattattaactaagctacattgttg 181  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||    
T  8831350 gcaaatctactgcctagcatctcattattaacttagctacattgttg 8831396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 182
Target Start/End: Original strand, 19566378 - 19566425
Alignment:
Q  135 gcaaatctactacctagcatctcattattaactaagctacattgttgc 182  Q
    |||||||||| |||||| ||||||||||||||| ||||||||||||||    
T  19566378 gcaaatctaccacctagtatctcattattaacttagctacattgttgc 19566425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 182
Target Start/End: Complemental strand, 23684894 - 23684849
Alignment:
Q  137 aaatctactacctagcatctcattattaactaagctacattgttgc 182  Q
    ||||||||  ||||||||||||||||||||| ||||||||||||||    
T  23684894 aaatctacctcctagcatctcattattaacttagctacattgttgc 23684849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University