View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9737_low_27 (Length: 251)
Name: NF9737_low_27
Description: NF9737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9737_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 30509582 - 30509345
Alignment:
| Q |
1 |
tttatgttgacaaattttattttcacagatggaaactatgcagggagcacacttagcatgttagggaggaatcctgttgctgaacaaaatagagaaatgc |
100 |
Q |
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| T |
30509582 |
tttatgttgacaaattttattttcacagatggaaactatgcagggagcacacttagcatgttagggaggaatcctgttgctgaacaaaatagagaaatgc |
30509483 |
T |
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| Q |
101 |
caatagttggggggactggactgttcaggtttgctaggggatatgtcatagcaaacagtgtttactctatttcttcccctgagaattttgttatggagta |
200 |
Q |
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| T |
30509482 |
caatagttggtgggactggactgttcaggtttgctaggggatatgtcatagcaaacagtgtttactctatttcttcccctgagaattttgttatggagta |
30509383 |
T |
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| Q |
201 |
caatatcacagtgtatcatcgtctttaaattatgccct |
238 |
Q |
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| T |
30509382 |
caatatcacagtgtatcatcatctttaaattatgccct |
30509345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 10971025 - 10971262
Alignment:
| Q |
1 |
tttatgttgacaaattttattttcacagatggaaactatgcagggagcacacttagcatgttagggaggaatcctgttgctgaacaaaatagagaaatgc |
100 |
Q |
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| T |
10971025 |
tttatgttgacaaattttattttcacagagggaaactatgcagggagcacacttagcatgttagggaggaatcctgttgctgaacaaaatagagaaatgg |
10971124 |
T |
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| Q |
101 |
caatagttggggggactggactgttcaggtttgctaggggatatgtcatagcaaacagtgtttactctatttcttcccctgagaattttgttatggagta |
200 |
Q |
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| T |
10971125 |
caatagttggtgggactggactgttcaggtttgctaggggatatgtcatagcaaacagtgtttactctatttcttcccctgagaattttgttatggagta |
10971224 |
T |
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| Q |
201 |
caatatcacagtgtatcatcgtctttaaattatgccct |
238 |
Q |
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| T |
10971225 |
caatatcacagtgtatcatcatctttaaattatgccct |
10971262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 119
Target Start/End: Complemental strand, 13703005 - 13702944
Alignment:
| Q |
58 |
atgttagggaggaatcctgttgctgaacaaaatagagaaatgccaatagttggggggactgg |
119 |
Q |
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| T |
13703005 |
atgttgggaaggaatcctatttctgaacaaaatagagaaatgcctattgttggtggaactgg |
13702944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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