View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9737_low_29 (Length: 250)
Name: NF9737_low_29
Description: NF9737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9737_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 49 - 234
Target Start/End: Original strand, 13629027 - 13629216
Alignment:
| Q |
49 |
gcgtgttggacattcatctaccgcaaaaacaaccaagcacttagcatcagtactgaatggtgtgatggtgtaaccagaggtcata----cataaccatac |
144 |
Q |
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| T |
13629027 |
gcgtgttggacattcatctaccgcaaaaacaaccaagcacttagtatcagtactgaatggtgtgatggcgtaaccagaggtcatacatacataaccatac |
13629126 |
T |
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| Q |
145 |
ggaaatcatcatatttgactggacgtgaattccactggaagtgtttctgaatctgatacaacatgacataacattcttgtcgtagtaatt |
234 |
Q |
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| T |
13629127 |
ggaaatcatcatatttgactggacgtgaattccactggaagtgtttctgaatctgatacaacatgacataacattcttgtcgtagtaatt |
13629216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 53 - 224
Target Start/End: Complemental strand, 13511603 - 13511432
Alignment:
| Q |
53 |
gttggacattcatctaccgcaaaaacaaccaagcacttagcatcagtactgaatggtgtgatggtgtaaccagaggtcatacataaccatacggaaatca |
152 |
Q |
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| T |
13511603 |
gttggacattcatctaccgcagaaacaaccaagcccttagaatcagtattggattgtgtgatggcgtaaccagaggtcatacataaccatatggaaggca |
13511504 |
T |
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| Q |
153 |
tcatatttgactggacgtgaattccactggaagtgtttctgaatctgatacaacatgacataacattcttgt |
224 |
Q |
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| T |
13511503 |
tcatatctgactggaggcgaattccactggaagtgtttctgaatctgatacaagatgacataactttcttgt |
13511432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 53 - 224
Target Start/End: Original strand, 21778824 - 21778995
Alignment:
| Q |
53 |
gttggacattcatctaccgcaaaaacaaccaagcacttagcatcagtactgaatggtgtgatggtgtaaccagaggtcatacataaccatacggaaatca |
152 |
Q |
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| T |
21778824 |
gttggacattcatctactgcagaaacaaccaagcccttagaatcagtattggatggtgtgatggcgtaaccagaggtcatacataaccatatggaaagca |
21778923 |
T |
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| Q |
153 |
tcatatttgactggacgtgaattccactggaagtgtttctgaatctgatacaacatgacataacattcttgt |
224 |
Q |
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| T |
21778924 |
tcatatctgactggaggcgaattccactggaagtgtttctgaatctgatacaagatgagataactttcttgt |
21778995 |
T |
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