View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9737_low_32 (Length: 247)

Name: NF9737_low_32
Description: NF9737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9737_low_32
NF9737_low_32
[»] chr8 (17 HSPs)
chr8 (28-182)||(21525354-21525508)
chr8 (28-181)||(22324593-22324746)
chr8 (28-182)||(35806790-35806944)
chr8 (28-183)||(33934347-33934502)
chr8 (28-182)||(26021391-26021546)
chr8 (28-182)||(42072424-42072578)
chr8 (28-178)||(42013872-42014022)
chr8 (51-182)||(19334778-19334910)
chr8 (28-160)||(21488084-21488216)
chr8 (50-160)||(43282851-43282962)
chr8 (27-160)||(24065291-24065424)
chr8 (38-181)||(10112042-10112187)
chr8 (39-112)||(16523172-16523245)
chr8 (51-178)||(16818974-16819105)
chr8 (55-182)||(2271196-2271318)
chr8 (52-100)||(16591377-16591425)
chr8 (129-160)||(34697469-34697500)
[»] chr2 (20 HSPs)
chr2 (28-181)||(29846439-29846592)
chr2 (28-182)||(42769736-42769890)
chr2 (31-182)||(14942025-14942176)
chr2 (29-182)||(14186417-14186570)
chr2 (51-182)||(19181544-19181675)
chr2 (28-182)||(40277266-40277420)
chr2 (74-182)||(1387312-1387421)
chr2 (28-181)||(3956567-3956722)
chr2 (55-181)||(6318463-6318592)
chr2 (63-181)||(40780050-40780171)
chr2 (86-182)||(3597903-3597999)
chr2 (52-183)||(33009665-33009799)
chr2 (51-182)||(14539705-14539838)
chr2 (55-157)||(43139766-43139870)
chr2 (62-182)||(41674718-41674841)
chr2 (86-181)||(23685406-23685503)
chr2 (29-89)||(3597869-3597929)
chr2 (55-181)||(28321708-28321836)
chr2 (86-157)||(25665244-25665316)
chr2 (99-181)||(32486239-32486323)
[»] chr7 (18 HSPs)
chr7 (26-182)||(29555915-29556071)
chr7 (28-182)||(44164721-44164875)
chr7 (28-181)||(34707113-34707266)
chr7 (38-183)||(24320427-24320572)
chr7 (28-182)||(10576669-10576823)
chr7 (28-182)||(29238121-29238275)
chr7 (43-182)||(32876523-32876662)
chr7 (28-170)||(34259526-34259668)
chr7 (28-163)||(29981091-29981226)
chr7 (38-181)||(33057645-33057789)
chr7 (55-181)||(19334565-19334693)
chr7 (38-181)||(17303102-17303248)
chr7 (38-181)||(10334173-10334318)
chr7 (55-181)||(26284383-26284510)
chr7 (55-134)||(15017817-15017896)
chr7 (55-155)||(9770682-9770782)
chr7 (55-103)||(43342485-43342533)
chr7 (29-84)||(41853205-41853260)
[»] chr4 (28 HSPs)
chr4 (28-182)||(49284353-49284507)
chr4 (28-182)||(1535767-1535921)
chr4 (38-182)||(25954746-25954890)
chr4 (26-182)||(35018932-35019087)
chr4 (38-183)||(34240988-34241133)
chr4 (29-182)||(37801243-37801396)
chr4 (26-182)||(36012162-36012317)
chr4 (63-182)||(52632514-52632633)
chr4 (28-181)||(17888528-17888683)
chr4 (63-178)||(46583554-46583669)
chr4 (44-155)||(16338207-16338318)
chr4 (28-181)||(31377385-31377539)
chr4 (117-181)||(16338311-16338375)
chr4 (42-183)||(46473987-46474130)
chr4 (38-182)||(50328790-50328936)
chr4 (28-160)||(20818584-20818717)
chr4 (55-176)||(9742538-9742661)
chr4 (85-181)||(322584-322682)
chr4 (51-151)||(10094394-10094495)
chr4 (28-105)||(36851365-36851442)
chr4 (50-181)||(54090176-54090308)
chr4 (38-181)||(11054448-11054595)
chr4 (52-134)||(47084056-47084138)
chr4 (28-182)||(12792209-12792365)
chr4 (55-160)||(19124743-19124849)
chr4 (52-181)||(33981997-33982130)
chr4 (74-181)||(35322728-35322837)
chr4 (28-60)||(46583529-46583561)
[»] chr5 (24 HSPs)
chr5 (28-181)||(16618548-16618701)
chr5 (28-181)||(38397595-38397748)
chr5 (28-183)||(6257388-6257543)
chr5 (28-182)||(23218481-23218635)
chr5 (28-182)||(37169011-37169165)
chr5 (28-178)||(15631613-15631764)
chr5 (28-182)||(39862465-39862619)
chr5 (30-181)||(8456943-8457096)
chr5 (29-182)||(36769053-36769207)
chr5 (31-181)||(25560309-25560460)
chr5 (48-178)||(614390-614522)
chr5 (55-181)||(10081140-10081268)
chr5 (38-157)||(33271258-33271377)
chr5 (53-181)||(42119617-42119747)
chr5 (51-160)||(6174762-6174873)
chr5 (31-158)||(29491395-29491521)
chr5 (38-152)||(10115185-10115300)
chr5 (52-182)||(27916133-27916266)
chr5 (55-160)||(9737986-9738094)
chr5 (51-160)||(29790220-29790328)
chr5 (39-155)||(10052489-10052606)
chr5 (63-181)||(11856290-11856410)
chr5 (51-160)||(3341121-3341230)
chr5 (57-110)||(33188330-33188383)
[»] chr6 (15 HSPs)
chr6 (26-182)||(24694627-24694783)
chr6 (28-181)||(9231832-9231985)
chr6 (30-183)||(13627535-13627688)
chr6 (46-182)||(14309794-14309930)
chr6 (30-152)||(1727913-1728035)
chr6 (65-182)||(27863694-27863812)
chr6 (39-181)||(28750639-28750783)
chr6 (41-176)||(13103109-13103246)
chr6 (63-160)||(34103703-34103800)
chr6 (129-182)||(11084606-11084659)
chr6 (84-181)||(11279536-11279634)
chr6 (41-112)||(24497565-24497636)
chr6 (38-104)||(11084664-11084730)
chr6 (84-160)||(11212689-11212765)
chr6 (117-178)||(24500767-24500830)
[»] chr3 (27 HSPs)
chr3 (26-182)||(5391453-5391609)
chr3 (15-182)||(32352843-32353010)
chr3 (28-181)||(13856096-13856249)
chr3 (28-181)||(21853194-21853347)
chr3 (28-182)||(40845895-40846049)
chr3 (28-182)||(8950482-8950636)
chr3 (39-182)||(44994957-44995101)
chr3 (63-184)||(23467507-23467628)
chr3 (27-181)||(43347313-43347468)
chr3 (28-181)||(20382514-20382668)
chr3 (51-172)||(22845363-22845484)
chr3 (34-181)||(3178699-3178847)
chr3 (37-181)||(19649359-19649506)
chr3 (55-177)||(54546904-54547027)
chr3 (38-182)||(10839368-10839514)
chr3 (51-181)||(1781757-1781889)
chr3 (55-182)||(33103738-33103866)
chr3 (55-180)||(8926762-8926889)
chr3 (28-181)||(36539627-36539782)
chr3 (51-158)||(46685785-46685891)
chr3 (63-182)||(48206848-48206968)
chr3 (52-182)||(6280361-6280492)
chr3 (55-156)||(51336231-51336332)
chr3 (78-171)||(47889731-47889826)
chr3 (40-100)||(27642738-27642798)
chr3 (55-134)||(50663178-50663257)
chr3 (117-181)||(36826021-36826087)
[»] chr1 (24 HSPs)
chr1 (28-182)||(3346782-3346936)
chr1 (28-178)||(5974988-5975138)
chr1 (28-182)||(10155994-10156148)
chr1 (28-182)||(49902464-49902618)
chr1 (28-182)||(42517272-42517430)
chr1 (28-182)||(7742757-7742911)
chr1 (28-182)||(48392384-48392538)
chr1 (28-182)||(47022698-47022852)
chr1 (63-181)||(23908282-23908400)
chr1 (63-182)||(29149561-29149680)
chr1 (28-178)||(38859849-38860001)
chr1 (38-181)||(10907636-10907781)
chr1 (55-182)||(26835332-26835461)
chr1 (51-181)||(42456566-42456699)
chr1 (51-160)||(30745361-30745471)
chr1 (51-160)||(30766812-30766922)
chr1 (85-153)||(5558334-5558402)
chr1 (66-182)||(44107404-44107522)
chr1 (38-156)||(26511622-26511739)
chr1 (63-160)||(13131914-13132011)
chr1 (92-160)||(30252787-30252856)
chr1 (114-159)||(8430505-8430551)
chr1 (56-121)||(37189697-37189762)
chr1 (51-160)||(45968685-45968794)
[»] scaffold0079 (2 HSPs)
scaffold0079 (44-155)||(54542-54653)
scaffold0079 (117-181)||(54485-54549)
[»] scaffold0045 (1 HSPs)
scaffold0045 (55-160)||(34457-34563)
[»] scaffold0086 (1 HSPs)
scaffold0086 (55-134)||(20836-20915)


Alignment Details
Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 28 - 182
Target Start/End: Complemental strand, 21525508 - 21525354
Alignment:
Q  28 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 127  Q
    ||||||||| | ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||| || |||||||||||    
T  21525508 gggcactcgccagggctccgggtcaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattggacaatttctttac 21525409  T
Q  128 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21525408 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 21525354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 28 - 181
Target Start/End: Complemental strand, 22324746 - 22324593
Alignment:
Q  28 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 127  Q
    ||||||||| |||||||||||| ||||||||||  |||||||||||||||| |||||||||||||||||||||||||| |||||| |  |||||||||||    
T  22324746 gggcactcgcccgggctccgggccaaattttttgtaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttac 22324647  T
Q  128 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22324646 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 22324593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 28 - 182
Target Start/End: Complemental strand, 35806944 - 35806790
Alignment:
Q  28 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 127  Q
    ||||||||| |||||||||||| |||||||||| |||||||||||||||||  ||||||||||||||||||||||||| |||||| |  |||||||||||    
T  35806944 gggcactcggccgggctccgggccaaattttttgcaatttcttgtgtaaatctctatgaatttcttatataaacccctataaattgggcaatttctttac 35806845  T
Q  128 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 182  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  35806844 attttttattatttgcttgcaatttcttatgtacaccctataaatgtgttgcaaa 35806790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 28 - 183
Target Start/End: Original strand, 33934347 - 33934502
Alignment:
Q  28 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 127  Q
    ||||||||| ||||||||| || |||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||| |  ||||| ||||     
T  33934347 gggcactcgcccgggctccaggccaaattttttgcaatttcttttgtaaattcctatgaatttcttatataaacccctataaattgggcaatttttttat 33934446  T
Q  128 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaaa 183  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33934447 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaaa 33934502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 28 - 182
Target Start/End: Complemental strand, 26021546 - 26021391
Alignment:
Q  28 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 127  Q
    ||||||| | |||||||||| | |||||||||| ||||||||| ||||||| |||||||||||||||||||||||||| |||||| | ||||||||||||    
T  26021546 gggcactagcccgggctccgtgccaaattttttgcaatttcttttgtaaatccctatgaatttcttatataaacccctataaattgggtaatttctttac 26021447  T
Q  128 att-ttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 182  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26021446 atttttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 26021391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 28 - 182
Target Start/End: Complemental strand, 42072578 - 42072424
Alignment:
Q  28 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 127  Q
    ||||||||| |||||||||||| ||| |||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||| || |||||||||||    
T  42072578 gggcactcgcccgggctccgggccaatttttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattggacaatttctttac 42072479  T
Q  128 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 182  Q
    |||||||||||||||||||||||||||||||||  |  |||||||||||||||||    
T  42072478 attttttattatttgcttgcaatttcttatgtaaacaatataaatgtgttgcaaa 42072424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 28 - 178
Target Start/End: Complemental strand, 42014022 - 42013872
Alignment:
Q  28 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 127  Q
    ||||||| ||||||| | |||| |||||||||| ||||||||||||||||| |||||||||||||||||||||| ||| |||||| |  ||||||||||     
T  42014022 gggcacttgtccgggtttcgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaactcctataaattgggcaatttctttat 42013923  T
Q  128 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttg 178  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42013922 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttg 42013872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 51 - 182
Target Start/End: Complemental strand, 19334910 - 19334778
Alignment:
Q  51 caaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacatt-ttttattatttgcttgcaa 149  Q
    |||||||||| ||||||||| | ||||||| ||||||||| ||||||||||| || |||||| || |||||||||| ||| ||||||||||||||| |||    
T  19334910 caaattttttgcaatttcttatataaattcttatgaattttttatataaacctctataaattagacaatttctttaaattgttttattatttgcttacaa 19334811  T
Q  150 tttcttatgtacgccctataaatgtgttgcaaa 182  Q
    |||||||||||  |||||||||| |||||||||    
T  19334810 tttcttatgtaacccctataaatatgttgcaaa 19334778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 28 - 160
Target Start/End: Complemental strand, 21488216 - 21488084
Alignment:
Q  28 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 127  Q
    |||||||||||||||||| |    |||  ||||| |||||||||||||||||||| ||||||||||||| |||||||  |||||| || ||||||||||     
T  21488216 gggcactcgtccgggctctgtcctaaagcttttataatttcttgtgtaaattcctttgaatttcttatagaaaccccgataaattggacaatttctttag 21488117  T
Q  128 atttttt-attatttgcttgcaatttcttatgta 160  Q
    ||||||| |||||| |||||||||||||||||||    
T  21488116 atttttttattatt-gcttgcaatttcttatgta 21488084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 50 - 160
Target Start/End: Original strand, 43282851 - 43282962
Alignment:
Q  50 tcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttcttta-cattttttattatttgcttgca 148  Q
    ||||||||||||||||||||| ||||||||| | ||||||| ||||||||| |||| |||||| | ||||||| |||  | ||||||||||||||||||     
T  43282851 tcaaattttttacaatttcttatgtaaattcttctgaatttattatataaatccctataaattgggtaatttcattagaaatttttattatttgcttgct 43282950  T
Q  149 atttcttatgta 160  Q
    ||||||||||||    
T  43282951 atttcttatgta 43282962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 27 - 160
Target Start/End: Complemental strand, 24065424 - 24065291
Alignment:
Q  27 tgggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttcttta 126  Q
    |||||| | |||| ||||| ||| ||||  |||| ||||||||  | |||||  ||||||||||||||||||||| ||| |||||| |  ||||||||||    
T  24065424 tgggcagttgtccaggctctgggccaaaacttttgcaatttctcatataaatctctatgaatttcttatataaactcctataaattgggcaatttcttta 24065325  T
Q  127 cattttttattatttgcttgcaatttcttatgta 160  Q
      ||||||||||||||||||||||||||||||||    
T  24065324 gcttttttattatttgcttgcaatttcttatgta 24065291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 38 - 181
Target Start/End: Complemental strand, 10112187 - 10112042
Alignment:
Q  38 ccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacatttttt-at 136  Q
    |||||||| || |||| |||||| |||||| || ||||||||||| | |||||||||||||||| | | |||||| || |||||||||  ||||||| ||    
T  10112187 ccgggctctggctcaatttttttgcaattttttatgtaaattcctcttaatttcttatataaactcttataaattggacaatttcttttaattttttgat 10112088  T
Q  137 tatttgcttgcaatttcttatgt-acgccctataaatgtgttgcaa 181  Q
    |||||  |||||||||||||||| |  |||||||||| ||||||||    
T  10112087 tatttatttgcaatttcttatgtaaacccctataaatatgttgcaa 10112042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 39 - 112
Target Start/End: Complemental strand, 16523245 - 16523172
Alignment:
Q  39 cgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatt 112  Q
    ||||||||||  |||||||||||||||||| | ||||||| ||||||||||||||||||||| |||| ||||||    
T  16523245 cgggctccggcccaaattttttacaatttcatatgtaaatccctatgaatttcttatataaatccctataaatt 16523172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 51 - 178
Target Start/End: Original strand, 16818974 - 16819105
Alignment:
Q  51 caaattttttacaatttcttgtgtaaat-tcctatgaatttcttatataaacccctctaaatttgataatttcttta---cattttttattatttgcttg 146  Q
    |||||||||| ||||||||| ||||||| |||| |||||||||||||||||||||| |||||| | |||||||| ||     | ||||||||||||||||    
T  16818974 caaattttttgcaatttcttttgtaaatctcct-tgaatttcttatataaacccctataaattgggtaatttctctatctagtattttattatttgcttg 16819072  T
Q  147 caatttcttatgt-acgccctataaatgtgttg 178  Q
    |||||| |||| | |  ||||||||||||||||    
T  16819073 caattttttatataaacccctataaatgtgttg 16819105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 182
Target Start/End: Complemental strand, 2271318 - 2271196
Alignment:
Q  55 ttttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacattttttattatttgcttgcaatttct 154  Q
    |||||| ||||||||| |||||||     |||||||||||||||||||||| || ||| | ||||||||||| ||||||||       ||| ||||||||    
T  2271318 ttttttgcaatttcttatgtaaatcatgctgaatttcttatataaacccctatatattaggtaatttctttagatttttta-------cttacaatttct 2271226  T
Q  155 tatgt--acgccctataaatgtgttgcaaa 182  Q
    |||||  || ||||||||||||||||||||    
T  2271225 tatgtaaaccccctataaatgtgttgcaaa 2271196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 100
Target Start/End: Original strand, 16591377 - 16591425
Alignment:
Q  52 aaattttttacaatttcttgtgtaaattcctatgaatttcttatataaa 100  Q
    ||||||||| ||||||||| |||||||| ||| ||||||||||||||||    
T  16591377 aaattttttgcaatttcttatgtaaatttctaagaatttcttatataaa 16591425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 160
Target Start/End: Original strand, 34697469 - 34697500
Alignment:
Q  129 ttttttattatttgcttgcaatttcttatgta 160  Q
    ||||||||||||||||||||||||||||||||    
T  34697469 ttttttattatttgcttgcaatttcttatgta 34697500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 126; Significance: 4e-65; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 28 - 181
Target Start/End: Complemental strand, 29846592 - 29846439
Alignment:
Q  28 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 127  Q
    ||||||||| |||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||| || |||||||||||    
T  29846592 gggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattggacaatttctttac 29846493  T
Q  128 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29846492 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 29846439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 28 - 182
Target Start/End: Original strand, 42769736 - 42769890
Alignment:
Q  28 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 127  Q
    ||||||||| |||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||| |  |||||||||||    
T  42769736 gggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttac 42769835  T
Q  128 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 182  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  42769836 attttttattatttgcttgcaatttcttatgtatgccctataaatgtgttgcaaa 42769890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 31 - 182
Target Start/End: Original strand, 14942025 - 14942176
Alignment:
Q  31 cactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacatt 130  Q
    |||||| |||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||| |  ||||||||||||||    
T  14942025 cactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttacatt 14942124  T
Q  131 ttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 182  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  14942125 ttttattatttgcttgcaatttcttatgtacgccttataaatgtgttgcaaa 14942176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 29 - 182
Target Start/End: Original strand, 14186417 - 14186570
Alignment:
Q  29 ggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttaca 128  Q
    |||||||| ||| |||||||| ||||||||||  |||||||||||||||| |||||||||||||||||||||||||| |||||| |  ||||||||||||    
T  14186417 ggcactcgcccgagctccgggccaaattttttgtaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttaca 14186516  T
Q  129 ttttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 182  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14186517 ctttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 14186570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 51 - 182
Target Start/End: Complemental strand, 19181675 - 19181544
Alignment:
Q  51 caaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacattttttattatttgcttgcaat 150  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |  ||||||||||||||||||||||||||||||||||    
T  19181675 caaattttttgcaatttcttgtgtaaattcctatgaatttcttatataaacccctataaattgggcaatttctttacattttttattatttgcttgcaat 19181576  T
Q  151 ttcttatgtacgccctataaatgtgttgcaaa 182  Q
    |||||||||| |||||||||||||||||||||    
T  19181575 ttcttatgtatgccctataaatgtgttgcaaa 19181544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 28 - 182
Target Start/End: Original strand, 40277266 - 40277420
Alignment:
Q  28 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 127  Q
    ||||||| |||||||||||||| |||||||||| |||||| || ||||||| ||||| ||||||||||||||| |||| |||||| |  |||||||||||    
T  40277266 gggcacttgtccgggctccgggccaaattttttgcaattttttatgtaaatccctataaatttcttatataaatccctataaattgggcaatttctttac 40277365  T
Q  128 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40277366 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 40277420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 74 - 182
Target Start/End: Original strand, 1387312 - 1387421
Alignment:
Q  74 taaattcctatgaatttcttatataaacccctctaaatttgataatttctttacattttttattatttgcttgcaatttcttatgtacgccc-tataaat 172  Q
    ||||| ||||||||||||||| |||||||||| |||||| | ||||||||||| |||||||||||||||||||||||||||||||||  ||| || ||||    
T  1387312 taaatccctatgaatttcttagataaacccctataaattgggtaatttctttagattttttattatttgcttgcaatttcttatgtaaacccttacaaat 1387411  T
Q  173 gtgttgcaaa 182  Q
    ||||||||||    
T  1387412 gtgttgcaaa 1387421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 28 - 181
Target Start/End: Complemental strand, 3956722 - 3956567
Alignment:
Q  28 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttcttt-a 126  Q
    ||||||||| |||||||||||  ||||   ||| |||||| || ||||||| ||||||||||| |||||||||||||| |||||| || ||||||||| |    
T  3956722 gggcactcgcccgggctccggcccaaaaaattttcaattttttatgtaaatccctatgaatttattatataaacccctgtaaattggacaatttctttaa 3956623  T
Q  127 cattttttattatttgcttgcaatttcttatgtacgcc-ctataaatgtgttgcaa 181  Q
     ||||||||||||||||||||||||||  |||||  || |||||||||||||||||    
T  3956622 aattttttattatttgcttgcaatttcaaatgtaaacctctataaatgtgttgcaa 3956567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 55 - 181
Target Start/End: Original strand, 6318463 - 6318592
Alignment:
Q  55 ttttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttaca--ttttttattatttgcttgcaattt 152  Q
    |||||| ||||||||| ||||||| ||||||||||||||||||||| |||| |||||| |  |||||||||| |  ||||||||||||||||||||||||    
T  6318463 tttttttcaatttcttatgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttagattttttttattatttgcttgcaattt 6318562  T
Q  153 cttatgtacg-ccctataaatgtgttgcaa 181  Q
    |  ||||| | |||||||||||||||||||    
T  6318563 caaatgtaagcccctataaatgtgttgcaa 6318592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 63 - 181
Target Start/End: Complemental strand, 40780171 - 40780050
Alignment:
Q  63 aatttcttgtgtaaattcctatgaatttcttatataaac-ccctctaaatttgataatttctttacatttttt-attatttgcttgcaatttcttatgta 160  Q
    |||||||| ||||||||||| |||||||||||||||||| |||| ||||||||| ||||| |||| ||||||| ||||||||||||||||||||||||||    
T  40780171 aatttcttatgtaaattcctctgaatttcttatataaacaccctataaatttgacaatttttttaaattttttaattatttgcttgcaatttcttatgta 40780072  T
Q  161 cgcc-ctataaatgtgttgcaa 181  Q
      || |||||||| ||||||||    
T  40780071 aaccgctataaatatgttgcaa 40780050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 86 - 182
Target Start/End: Original strand, 3597903 - 3597999
Alignment:
Q  86 aatttcttatataaacccctctaaatttgataatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 182  Q
    |||||||| | |||| |||| |||||| || ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||    
T  3597903 aatttcttgtgtaaatccctataaattggacaatttctttacattttttattatttacttgcaatttcttacgtacgccctataaatgtattgcaaa 3597999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 52 - 183
Target Start/End: Complemental strand, 33009799 - 33009665
Alignment:
Q  52 aaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacatttt--ttattatttgcttgcaa 149  Q
    ||||||||||||||||||| | ||||| ||||||||||| ||||||||| || | |||||| || |||||||||| |||||  |||||||||||||||||    
T  33009799 aaattttttacaatttcttatataaatccctatgaatttgttatataaatccttataaattggacaatttctttagatttttattattatttgcttgcaa 33009700  T
Q  150 tttcttatgtacgccc-tataaatgtgttgcaaaa 183  Q
    ||| |||||||  ||| |||||| |||||||||||    
T  33009699 ttttttatgtaaacccatataaacgtgttgcaaaa 33009665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 51 - 182
Target Start/End: Original strand, 14539705 - 14539838
Alignment:
Q  51 caaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttaca-ttttttattatttgcttgcaa 149  Q
    |||||||||| ||||||||| ||||| ||||| |||||||||||||||||  ||| |||||| |  |||||||||| | ||||||||||||| |||||||    
T  14539705 caaattttttgcaatttcttatgtaatttcctctgaatttcttatataaattcctataaattaggcaatttctttagatttttttattattttcttgcaa 14539804  T
Q  150 tttcttatgtacgc-cctataaatgtgttgcaaa 182  Q
    |||||||| ||  | |||||||||||||||||||    
T  14539805 tttcttatataaacacctataaatgtgttgcaaa 14539838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 55 - 157
Target Start/End: Complemental strand, 43139870 - 43139766
Alignment:
Q  55 ttttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttaca--ttttttattatttgcttgcaattt 152  Q
    |||||| ||||||||| ||||| ||||| | |||||||||||||||||||| ||||||    |||||||||| |  ||||||||||||||||||||||||    
T  43139870 ttttttgcaatttcttatgtaagttcctcttaatttcttatataaacccctataaattgagcaatttctttagattttttttattatttgcttgcaattt 43139771  T
Q  153 cttat 157  Q
    |||||    
T  43139770 cttat 43139766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 62 - 182
Target Start/End: Original strand, 41674718 - 41674841
Alignment:
Q  62 caatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacatttttt--attatttgcttgcaatttcttatgt 159  Q
    ||||||||| |||||||  || ||||||| |||||||||||| | |||||| || |||||||||| |||||||  | ||||||||||||||||||||| |    
T  41674718 caatttcttatgtaaatctctctgaattttttatataaacccttataaattggacaatttctttagatttttttaactatttgcttgcaatttcttatat 41674817  T
Q  160 -acgccctataaatgtgttgcaaa 182  Q
     |  ||||||||||||||||||||    
T  41674818 aaatccctataaatgtgttgcaaa 41674841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 86 - 181
Target Start/End: Original strand, 23685406 - 23685503
Alignment:
Q  86 aatttcttatataaacccctctaaatttgataatttctttacatttttt-attatttgcttgcaatttcttatgtacgccc-tataaatgtgttgcaa 181  Q
    ||||||||||||||| || | ||||||||| ||||| |||| || |||| ||||||||||||||||||||||||||  ||| ||||||| ||||||||    
T  23685406 aatttcttatataaatccttataaatttgacaatttatttatatattttgattatttgcttgcaatttcttatgtaaacccttataaatatgttgcaa 23685503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 89
Target Start/End: Original strand, 3597869 - 3597929
Alignment:
Q  29 ggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatt 89  Q
    |||||||| |||||||||||| |||||||||| ||||||||||||||||| ||||| ||||    
T  3597869 ggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctataaatt 3597929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 181
Target Start/End: Original strand, 28321708 - 28321836
Alignment:
Q  55 ttttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacatttttt-attatttgcttgcaatttc 153  Q
    |||||| ||||||||| |||||||||   ||||| |||||||||||||| | |||||| |  |||||| ||  ||||||| ||||||||||| |||||||    
T  28321708 ttttttgcaatttcttatgtaaattctcctgaatatcttatataaacccttataaattgggcaatttcattgaattttttgattatttgcttccaatttc 28321807  T
Q  154 ttatgt-acgccctataaatgtgttgcaa 181  Q
    |||| | |  |||||||||||||||||||    
T  28321808 ttatataaacccctataaatgtgttgcaa 28321836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 157
Target Start/End: Complemental strand, 25665316 - 25665244
Alignment:
Q  86 aatttcttatataaacccctctaaatttgataatttctttacatttttt-attatttgcttgcaatttcttat 157  Q
    ||||||||||||||||   | |||||| | |||||||||||  |||||| |||||||||||||||||| ||||    
T  25665316 aatttcttatataaacatttataaattgggtaatttctttaagttttttgattatttgcttgcaattttttat 25665244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 181
Target Start/End: Complemental strand, 32486323 - 32486239
Alignment:
Q  99 aacccctctaaatttgataatttctttacatttttta-ttatttgcttgcaatttcttatgtacgc-cctataaatgtgttgcaa 181  Q
    ||||||| |||||| | |||||| || | |||||||| |||||||||||||||||||||| ||  | | ||||||||||||||||    
T  32486323 aacccctataaattgggtaattttttaagattttttaattatttgcttgcaatttcttatataaacacttataaatgtgttgcaa 32486239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 26 - 182
Target Start/End: Original strand, 29555915 - 29556071
Alignment:
Q  26 ctgggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttcttt 125  Q
    ||||||||||| |||| ||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||||||    
T  29555915 ctgggcactcgcccggcctccgggccaattttttgacaatttcttgtgtaaattcctatgaatttcttatataaacccctataaattggacaatttcttt 29556014  T
Q  126 acattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29556015 acattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 29556071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 28 - 182
Target Start/End: Original strand, 44164721 - 44164875
Alignment:
Q  28 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 127  Q
    ||||||||| |||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||| |  |||||||||||    
T  44164721 gggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatttctatgaatttcttatataaacccctataaattgggcaatttctttac 44164820  T
Q  128 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44164821 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 44164875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 28 - 181
Target Start/End: Complemental strand, 34707266 - 34707113
Alignment:
Q  28 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 127  Q
    ||||||||| |||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||| |  |||||||||||    
T  34707266 gggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttac 34707167  T
Q  128 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34707166 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 34707113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 38 - 183
Target Start/End: Original strand, 24320427 - 24320572
Alignment:
Q  38 ccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacattttttatt 137  Q
    |||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||| |  |||||||||||||||||||||    
T  24320427 ccgggctccgggccaaattttttgcaatttcttgtgtaaattcctacgaatttcttatataaacccctataaattgggcaatttctttacattttttatt 24320526  T
Q  138 atttgcttgcaatttcttatgtacgccctataaatgtgttgcaaaa 183  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  24320527 atttgcttgcaatttcttatgtacgccctataaatgtgttgcaaaa 24320572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 28 - 182
Target Start/End: Complemental strand, 10576823 - 10576669
Alignment:
Q  28 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 127  Q
    ||||||||  |||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||| |  |||||||||||    
T  10576823 gggcactcacccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttac 10576724  T
Q  128 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  10576723 attttttattatttgcttgcaatttcttatgtacgccctataaatgtattgcaaa 10576669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 28 - 182
Target Start/End: Original strand, 29238121 - 29238275
Alignment:
Q  28 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 127  Q
    ||||||||| |||||||||||| ||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||  ||||| || |||||||||||    
T  29238121 gggcactcgcccgggctccgggccaatttttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctaaaaattggaaaatttctttac 29238220  T
Q  128 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 182  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  29238221 attttttattatttgcttacaatttcttatgtaggccctataaatgtgttgcaaa 29238275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 43 - 182
Target Start/End: Original strand, 32876523 - 32876662
Alignment:
Q  43 ctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacattttttattatttg 142  Q
    ||||||| |||||||||| |||||||||||||| || |||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||    
T  32876523 ctccgggccaaattttttgcaatttcttgtgtagatccctatgaatttcttatataaacccctataaattggacaatttctttacattttttattatttg 32876622  T
Q  143 cttgcaatttcttatgtacgccctataaatgtgttgcaaa 182  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  32876623 cttgcaatttcttatgtacgctctataaatgtgttgcaaa 32876662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 28 - 170
Target Start/End: Complemental strand, 34259668 - 34259526
Alignment:
Q  28 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 127  Q
    ||||||||| |||||||||||| ||| |||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||| |  |||||||||||    
T  34259668 gggcactcgcccgggctccgggccaatttttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttac 34259569  T
Q  128 attttttattatttgcttgcaatttcttatgtacgccctataa 170  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  34259568 attttttattatttgcttgcaatttcttatgtacgccctataa 34259526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 28 - 163
Target Start/End: Original strand, 29981091 - 29981226
Alignment:
Q  28 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 127  Q
    ||||||||| |||||||||||| ||| | |||| ||||||||||||||||| ||||||||||||||||||||||  || |||||| || ||||||||||     
T  29981091 gggcactcgcccgggctccgggccaattcttttgcaatttcttgtgtaaatccctatgaatttcttatataaacttctataaattggacaatttctttat 29981190  T
Q  128 attttttattatttgcttgcaatttcttatgtacgc 163  Q
    ||||||||||||||||||||||||||||||||||||    
T  29981191 attttttattatttgcttgcaatttcttatgtacgc 29981226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 38 - 181
Target Start/End: Original strand, 33057645 - 33057789
Alignment:
Q  38 ccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttaca-ttttttat 136  Q
    |||||||||||  ||| |||||| ||||||||| ||||||| |||||||||||||||||||| ||||| ||||||  | |||||||||| | ||||||||    
T  33057645 ccgggctccggcccaattttttttcaatttcttatgtaaatccctatgaatttcttatataatcccctataaattgaacaatttctttagatttttttat 33057744  T
Q  137 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 181  Q
    ||||||||||||||||||||||||   ||||||||||||||||||    
T  33057745 tatttgcttgcaatttcttatgtaaatcctataaatgtgttgcaa 33057789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 55 - 181
Target Start/End: Original strand, 19334565 - 19334693
Alignment:
Q  55 ttttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttaca--ttttttattatttgcttgcaattt 152  Q
    |||||| ||||||||| ||||||| |||||||||||||||||||||||||| |||||| || |||||||||| |  ||||||||||||||||||||||||    
T  19334565 ttttttgcaatttcttatgtaaatacctatgaatttcttatataaacccctataaattggacaatttctttagattttttttattatttgcttgcaattt 19334664  T
Q  153 cttatgtacgccctataaatgtgttgcaa 181  Q
    ||||| ||  |||||||||| ||||||||    
T  19334665 cttatataaaccctataaatttgttgcaa 19334693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 38 - 181
Target Start/End: Original strand, 17303102 - 17303248
Alignment:
Q  38 ccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttaca--tttttta 135  Q
    ||||||||||   ||| |||||| ||||||||| |||||||||||||||||||||||||||||||| | |||||| |  |||||||||| |  |||||||    
T  17303102 ccgggctccgacccaatttttttgcaatttcttatgtaaattcctatgaatttcttatataaacccttgtaaattgggcaatttctttagatttttttta 17303201  T
Q  136 ttatttgcttgcaatttcttatgtacgcc-ctataaatgtgttgcaa 181  Q
    |||||||||||||||||||||||||  || |||||||||||||||||    
T  17303202 ttatttgcttgcaatttcttatgtaaaccactataaatgtgttgcaa 17303248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 38 - 181
Target Start/End: Complemental strand, 10334318 - 10334173
Alignment:
Q  38 ccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacat-tttttat 136  Q
    |||||||| ||  ||| |||||| ||||||||| ||||||||||| |||||||||||||||||| | | |||||| |  |||||||||| || ||||||     
T  10334318 ccgggctctggcccaatttttttgcaatttcttatgtaaattcctctgaatttcttatataaactcttataaattgggcaatttctttagatatttttaa 10334219  T
Q  137 tatttgcttgcaatttcttatgt-acgccctataaatgtgttgcaa 181  Q
    ||||||||||||||||||||||| |  |||||||||||||||||||    
T  10334218 tatttgcttgcaatttcttatgtaaacccctataaatgtgttgcaa 10334173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 55 - 181
Target Start/End: Original strand, 26284383 - 26284510
Alignment:
Q  55 ttttttacaatttcttgtgtaaattcc-tatgaatttcttatataaacccctctaaatttgataatttctttacattttttattatttgcttgcaatttc 153  Q
    |||||| ||||||||| |||||| ||| | ||||||||||||| ||||   | |||||| || |||||||||| |||||||||||||| |||||||||||    
T  26284383 ttttttgcaatttcttatgtaaaatccctctgaatttcttata-aaactagtataaattggacaatttctttagattttttattattttcttgcaatttc 26284481  T
Q  154 ttatgt-acgccctataaatgtgttgcaa 181  Q
    || ||| |  |||||||||||||||||||    
T  26284482 ttttgtaaacccctataaatgtgttgcaa 26284510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 55 - 134
Target Start/End: Complemental strand, 15017896 - 15017817
Alignment:
Q  55 ttttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacatttttt 134  Q
    |||||| ||||||||| ||||||||||| |||||||||||||||||| | | |||||| || |||||||||| |||||||    
T  15017896 ttttttgcaatttcttatgtaaattcctctgaatttcttatataaacgcgtataaattggacaatttctttagatttttt 15017817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 155
Target Start/End: Complemental strand, 9770782 - 9770682
Alignment:
Q  55 ttttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacattttttattatttgcttgcaatttct 154  Q
    |||||| ||||||||| |||||||     ||||||||||||||||||| || | |||| || |||||||||| | |||| ||||||||||||||||||||    
T  9770782 ttttttgcaatttcttatgtaaatcatcctgaatttcttatataaaccactatgaattggacaatttctttagacttttgattatttgcttgcaatttct 9770683  T
Q  155 t 155  Q
    |    
T  9770682 t 9770682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 43342533 - 43342485
Alignment:
Q  55 ttttttacaatttcttgtgtaaattcctatgaatttcttatataaaccc 103  Q
    |||||| ||||||||| ||||||||||| ||||||||||||||||||||    
T  43342533 ttttttgcaatttcttatgtaaattcctctgaatttcttatataaaccc 43342485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 84
Target Start/End: Complemental strand, 41853260 - 41853205
Alignment:
Q  29 ggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctat 84  Q
    |||||||| |||||||||||  |||||||||| ||||||||| | |||||||||||    
T  41853260 ggcactcgcccgggctccggcccaaattttttgcaatttcttatttaaattcctat 41853205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 123; Significance: 3e-63; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 28 - 182
Target Start/End: Complemental strand, 49284507 - 49284353
Alignment:
Q  28 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 127  Q
    |||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||| |  |||||||||||    
T  49284507 gggcactcgtccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttac 49284408  T
Q  128 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 182  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  49284407 attttttattatttgtttgcaatttcttatgtacgccctataaatgtgttgcaaa 49284353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 28 - 182
Target Start/End: Complemental strand, 1535921 - 1535767
Alignment:
Q  28 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 127  Q
    ||||||||| |||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||| |  |||||||||||    
T  1535921 gggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttac 1535822  T
Q  128 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 182  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  1535821 attttttattatttgcttgcaatttcttatgtatgccctataaatgtgttgcaaa 1535767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 38 - 182
Target Start/End: Complemental strand, 25954890 - 25954746
Alignment:
Q  38 ccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacattttttatt 137  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||| |  |||||||||||||||||||||    
T  25954890 ccgggctccgggccaaattttttgcaatttcttgtgtaaattcctatgaatttcttatataaactcctataaattgggcaatttctttacattttttatt 25954791  T
Q  138 atttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  25954790 atttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 25954746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 26 - 182
Target Start/End: Complemental strand, 35019087 - 35018932
Alignment:
Q  26 ctgggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttcttt 125  Q
    ||||||||||| |||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||| | ||||||||||    
T  35019087 ctgggcactcgcccgggctctgggccaaattttttacaatttcttgtgtaaat-cctatgaatttcttatataaacccttataaattaggtaatttcttt 35018989  T
Q  126 acattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 182  Q
    |||||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  35018988 acattttttattatttgcttgcaatttcttatgtacaccttataaatgtgttgcaaa 35018932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 38 - 183
Target Start/End: Complemental strand, 34241133 - 34240988
Alignment:
Q  38 ccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacattttttatt 137  Q
    |||||||||||| |||||||||| |||||||||||||| || |||||||||||||||||||||||||| |||||| |  |||||||||||||||||||||    
T  34241133 ccgggctccgggccaaattttttgcaatttcttgtgtagatccctatgaatttcttatataaacccctataaattgggcaatttctttacattttttatt 34241034  T
Q  138 atttgcttgcaatttcttatgtacgccctataaatgtgttgcaaaa 183  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  34241033 atttgcttgcaatttcttatgtacgccctataaatgtgttgtaaaa 34240988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 29 - 182
Target Start/End: Original strand, 37801243 - 37801396
Alignment:
Q  29 ggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttaca 128  Q
    |||| ||||||||||||||||  ||||||||| |||||||||||||||||| |||||||||| ||||||||| |||| |||||| |  || |||||||||    
T  37801243 ggcattcgtccgggctccgggctaaattttttgcaatttcttgtgtaaatttctatgaattttttatataaatccctataaattgggcaaattctttaca 37801342  T
Q  129 ttttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37801343 ttttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 37801396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 26 - 182
Target Start/End: Original strand, 36012162 - 36012317
Alignment:
Q  26 ctgggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttcttt 125  Q
    ||||||||||||| ||||| |||| |||||||||| |||||| |||||||||| |||||||||||||||||||||||||| |||||| |  |||||||||    
T  36012162 ctgggcactcgtc-gggcttcgggccaaattttttgcaattttttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttt 36012260  T
Q  126 acattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 182  Q
    ||||||||||||||||||||||||||| ||||||| | | |||||||||||||||||    
T  36012261 acattttttattatttgcttgcaattttttatgtatgtcatataaatgtgttgcaaa 36012317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 63 - 182
Target Start/End: Complemental strand, 52632633 - 52632514
Alignment:
Q  63 aatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacattttttattatttgcttgcaatttcttatgtacg 162  Q
    |||||||||||||||| ||||||||||||||||||||| |||| |||||| |  ||||||||||||||||||| ||||||||||||||||||||||||||    
T  52632633 aatttcttgtgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttacattttttaatatttgcttgcaatttcttatgtacg 52632534  T
Q  163 ccctataaatgtgttgcaaa 182  Q
    ||||||||||||||||||||    
T  52632533 ccctataaatgtgttgcaaa 52632514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 28 - 181
Target Start/End: Original strand, 17888528 - 17888683
Alignment:
Q  28 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 127  Q
    ||||||||| |||||||||||  |||||||||| ||||||||| |||||||||||||||||||||||||||| ||||| |||||| |  ||||||||||     
T  17888528 gggcactcgcccgggctccggcccaaatttttttcaatttcttatgtaaattcctatgaatttcttatataaccccctataaattgggcaatttctttag 17888627  T
Q  128 a-ttttttattatttgcttgcaatttcttatgt-acgccctataaatgtgttgcaa 181  Q
    | ||||||||||||||||||||||||||||||| |  |||||||||||||||||||    
T  17888628 atttttttattatttgcttgcaatttcttatgtaaacccctataaatgtgttgcaa 17888683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 63 - 178
Target Start/End: Original strand, 46583554 - 46583669
Alignment:
Q  63 aatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacattttttattatttgcttgcaatttcttatgtacg 162  Q
    ||||| |||||||||| |||||||||||||||||||||||||| |||||| |  ||||||||||||||||||||||||||||||||||||||||||||||    
T  46583554 aattttttgtgtaaatccctatgaatttcttatataaacccctataaattaggcaatttctttacattttttattatttgcttgcaatttcttatgtacg 46583653  T
Q  163 ccctataaatgtgttg 178  Q
    || |||||||||||||    
T  46583654 ccatataaatgtgttg 46583669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 44 - 155
Target Start/End: Original strand, 16338207 - 16338318
Alignment:
Q  44 tccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacattttttattatttgc 143  Q
    |||||| ||| |||||| |||||| |||||||||||||||||||||| ||||||||| |||| |||||| || |||||||||||||||||||||||||||    
T  16338207 tccgggccaatttttttgcaattttttgtgtaaattcctatgaattttttatataaatccctataaattggacaatttctttacattttttattatttgc 16338306  T
Q  144 ttgcaatttctt 155  Q
    ||||||||||||    
T  16338307 ttgcaatttctt 16338318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 28 - 181
Target Start/End: Complemental strand, 31377539 - 31377385
Alignment:
Q  28 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 127  Q
    ||||||||| |||||||||||  |||||||||| ||||||||| ||||||| |||||||||||||||||||| || || |||||| |  ||||||||||     
T  31377539 gggcactcgcccgggctccggcccaaatttttt-caatttcttatgtaaatccctatgaatttcttatataaccctctataaattgggcaatttctttag 31377441  T
Q  128 atttttt-attatttgcttgcaatttcttatgtacgcc-ctataaatgtgttgcaa 181  Q
    ||||||| | ||||||||||||||||||||||||  || |||||||||||||||||    
T  31377440 attttttaactatttgcttgcaatttcttatgtaaaccgctataaatgtgttgcaa 31377385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 117 - 181
Target Start/End: Original strand, 16338311 - 16338375
Alignment:
Q  117 aatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 181  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16338311 aatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 16338375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 42 - 183
Target Start/End: Complemental strand, 46474130 - 46473987
Alignment:
Q  42 gctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacattttt-tattatt 140  Q
    |||||||  |||||||||| ||||||||| ||||||||||| ||||||| |||||||||||| | ||||||  | |||||||||| |||||| |||||||    
T  46474130 gctccggcccaaattttttgcaatttcttatgtaaattcctgtgaattttttatataaacccatataaattgtacaatttctttagatttttgtattatt 46474031  T
Q  141 tgcttgcaatttcttatgt-acgccctataaatgtgttgcaaaa 183  Q
    |||||| |||||||||||| |  || ||||||||||||||||||    
T  46474030 tgcttgtaatttcttatgtaaatccttataaatgtgttgcaaaa 46473987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 38 - 182
Target Start/End: Complemental strand, 50328936 - 50328790
Alignment:
Q  38 ccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttaca-ttttttat 136  Q
    |||||||| || |||| |||||| ||||||||| ||||||||||| | ||||||||||||||||| || |||||| || |||||||||| | ||||||||    
T  50328936 ccgggctctggctcaatttttttgcaatttcttttgtaaattcctcttaatttcttatataaacctctataaattggacaatttctttaaatttttttat 50328837  T
Q  137 tatttgcttgcaatttcttatgtacgccc-tataaatgtgttgcaaa 182  Q
    ||||  |||||||||| |||||||  ||| |||||||||||||||||    
T  50328836 tattcacttgcaattttttatgtaaacccttataaatgtgttgcaaa 50328790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 28 - 160
Target Start/End: Complemental strand, 20818717 - 20818584
Alignment:
Q  28 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 127  Q
    ||||||||| |||||||| |   |||||||||| ||||||||| ||||||| |||||||||||||||||||||| ||| |||||| |  ||||| ||||     
T  20818717 gggcactcgcccgggctctgacccaaattttttgcaatttcttttgtaaatccctatgaatttcttatataaactcctataaattggtcaatttttttag 20818618  T
Q  128 atttttt-attatttgcttgcaatttcttatgta 160  Q
    ||||||| |||||||| |||||||||||||||||    
T  20818617 attttttgattatttgtttgcaatttcttatgta 20818584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 55 - 176
Target Start/End: Original strand, 9742538 - 9742661
Alignment:
Q  55 ttttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacatttttt-attatttgcttgcaatttc 153  Q
    |||||||||||||||| ||||||||||| |||||||||||||| ||||||| |||||| |  |||||||||| ||||||| ||||||| | |||||||||    
T  9742538 ttttttacaatttcttatgtaaattcctctgaatttcttatattaacccctataaattgggcaatttctttagattttttgattattttcatgcaatttc 9742637  T
Q  154 ttatgtacgc-cctataaatgtgt 176  Q
    |||||||  | |||||||||||||    
T  9742638 ttatgtaaacacctataaatgtgt 9742661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 85 - 181
Target Start/End: Original strand, 322584 - 322682
Alignment:
Q  85 gaatttcttatataaacccctctaaatttgataatttctttacatttttt-attatttgcttgcaatttcttatgtacgc-cctataaatgtgttgcaa 181  Q
    ||||||||||||||||||||| |||||| || |||||||||| ||||||| ||||||||||||||||||||||||||  | ||| ||||||||||||||    
T  322584 gaatttcttatataaacccctataaattggacaatttctttaaattttttgattatttgcttgcaatttcttatgtaaacacctgtaaatgtgttgcaa 322682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 51 - 151
Target Start/End: Original strand, 10094394 - 10094495
Alignment:
Q  51 caaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacatttttt-attatttgcttgcaa 149  Q
    ||||||||||  |||||||| |||||||| || |||||||||||||||||||||| |||||| | |||||| |||| ||||||| |||||||||||||||    
T  10094394 caaattttttgtaatttcttatgtaaatttctctgaatttcttatataaacccctataaattgggtaatttatttagattttttgattatttgcttgcaa 10094493  T
Q  150 tt 151  Q
    ||    
T  10094494 tt 10094495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 28 - 105
Target Start/End: Original strand, 36851365 - 36851442
Alignment:
Q  28 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccct 105  Q
    ||||||||| | |||||||||| |||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||    
T  36851365 gggcactcgcctgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttattatataaacccct 36851442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 50 - 181
Target Start/End: Complemental strand, 54090308 - 54090176
Alignment:
Q  50 tcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacattttttattatttgcttgcaa 149  Q
    ||||||||||| ||||| ||| ||||||| ||| ||||||| |||||||||| | | |||||| |  ||||| |||| ||||||||||||||||||||||    
T  54090308 tcaaattttttgcaattccttttgtaaatccctctgaatttattatataaactcttataaattgggcaatttttttagattttttattatttgcttgcaa 54090209  T
Q  150 -tttcttatgtacgccctataaatgtgttgcaa 181  Q
     ||| |||||||  ||||||| |||||||||||    
T  54090208 tttttttatgtaaaccctatagatgtgttgcaa 54090176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 38 - 181
Target Start/End: Complemental strand, 11054595 - 11054448
Alignment:
Q  38 ccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttcttta-catttttt-- 134  Q
    ||||||||||| || |||||||| ||||||||| ||||||| ||||||||||||||||||||||| || |||||| |  ||| ||||||  |||||||      
T  11054595 ccgggctccgg-tccaattttttgcaatttcttatgtaaatccctatgaatttcttatataaacctctataaattgggcaatctctttagtatttttttt 11054497  T
Q  135 -attatttgcttgcaatttcttatgtacgcc-ctataaatgtgttgcaa 181  Q
      |||||||||||||||||||||||||  ||  ||||||||||||||||    
T  11054496 atttatttgcttgcaatttcttatgtaaacctttataaatgtgttgcaa 11054448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 52 - 134
Target Start/End: Complemental strand, 47084138 - 47084056
Alignment:
Q  52 aaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacatttttt 134  Q
    ||||||||| ||||||||| |||||||| || |||||||||||||||||||||| |||||| | ||||||||||| |||||||    
T  47084138 aaattttttgcaatttcttatgtaaatttctctgaatttcttatataaacccctataaattgggtaatttctttagatttttt 47084056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 28 - 182
Target Start/End: Original strand, 12792209 - 12792365
Alignment:
Q  28 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 127  Q
    |||||| ||||||||||  ||  ||| ||||||  |||||||| |||||||| || |||||||||||||||||||||| |||||| |  |||| |||||     
T  12792209 gggcacgcgtccgggctttggcccaatttttttgtaatttcttatgtaaatttctctgaatttcttatataaacccctataaattgggcaattactttag 12792308  T
Q  128 attttt-tattatttgcttgcaatttcttatgtacgc-cctataaatgtgttgcaaa 182  Q
    ||||||  |||||||||||| |||||||||| ||  |  ||||||||||||||||||    
T  12792309 atttttagattatttgcttgaaatttcttatataaacatctataaatgtgttgcaaa 12792365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 55 - 160
Target Start/End: Original strand, 19124743 - 19124849
Alignment:
Q  55 ttttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgat-aatttctttaca-ttttttattatttgcttgcaattt 152  Q
    |||||| ||||||||| ||||||||||| ||||||||||||||||||  || |||| ||||| |||||||||| | ||||||||||||| ||| ||||||    
T  19124743 ttttttgcaatttcttatgtaaattcctctgaatttcttatataaacatctgtaaa-ttgatcaatttctttaaatttttttattatttacttacaattt 19124841  T
Q  153 cttatgta 160  Q
    ||||||||    
T  19124842 cttatgta 19124849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 52 - 181
Target Start/End: Complemental strand, 33982130 - 33981997
Alignment:
Q  52 aaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacatt-ttttatta--tttgcttgca 148  Q
    |||||||||| |||||||| ||||||| ||| | |||||||||||||||| | | |||||| ||||||||||||| ||| | ||| ||  ||||||||||    
T  33982130 aaattttttaaaatttcttttgtaaatccctctaaatttcttatataaactcttataaattagataatttctttagattgtattaatatttttgcttgca 33982031  T
Q  149 atttcttatgtacgccc-tataaatgtgttgcaa 181  Q
    |||| |||||||  ||| | ||||||||||||||    
T  33982030 attttttatgtaaacccatgtaaatgtgttgcaa 33981997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 74 - 181
Target Start/End: Original strand, 35322728 - 35322837
Alignment:
Q  74 taaattcctatgaatttcttatataaacccctctaaatttgataatttctttacatttttt-attatttgcttgcaatttcttatgt-acgccctataaa 171  Q
    |||||| || ||||| ||||||||||||| || ||||||  | |||||||||| ||||||| ||||||||||||||||||||||| | |  |||||||||    
T  35322728 taaatttctctgaatctcttatataaacctctataaattgaacaatttctttagattttttgattatttgcttgcaatttcttatataaacccctataaa 35322827  T
Q  172 tgtgttgcaa 181  Q
     |||||||||    
T  35322828 agtgttgcaa 35322837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 60
Target Start/End: Original strand, 46583529 - 46583561
Alignment:
Q  28 gggcactcgtccgggctccgggtcaaatttttt 60  Q
    ||||||||| |||||||||||||||||||||||    
T  46583529 gggcactcgcccgggctccgggtcaaatttttt 46583561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 28 - 181
Target Start/End: Original strand, 16618548 - 16618701
Alignment:
Q  28 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 127  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||| || ||||| ||||     
T  16618548 gggcactcgtccgggctccgggccaaattttttacaatttcttgtgtaaatccctatgaatttcttatataaactcctataaattggacaatttttttat 16618647  T
Q  128 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16618648 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 16618701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 28 - 181
Target Start/End: Complemental strand, 38397748 - 38397595
Alignment:
Q  28 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 127  Q
    ||||||||| |||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||| |  |||||||||||    
T  38397748 gggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttac 38397649  T
Q  128 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 181  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  38397648 attttttattatttgcttgcaatttcttatgtacgtcctataaatgtgttgcaa 38397595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 28 - 183
Target Start/End: Original strand, 6257388 - 6257543
Alignment:
Q  28 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 127  Q
    ||||||||| |||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||| |||||||| |||||| |  |||||||||||    
T  6257388 gggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatacaaacccctataaattgggcaatttctttac 6257487  T
Q  128 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaaa 183  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  6257488 attttttattatttgcttgcaatttcttatatacgccctataaatgtgttgcaaaa 6257543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 28 - 182
Target Start/End: Complemental strand, 23218635 - 23218481
Alignment:
Q  28 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 127  Q
    ||||||||| ||||| |||||| |||| ||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||| |  |||||||||||    
T  23218635 gggcactcgcccgggttccgggccaaagtttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttac 23218536  T
Q  128 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 182  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  23218535 attttttattatttgcttgcaatttcttatgtactccctataaatgtgttgcaaa 23218481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 28 - 182
Target Start/End: Original strand, 37169011 - 37169165
Alignment:
Q  28 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 127  Q
    ||||||| | |||||||||||| |||||||||| |||||| |||||||||| |||||||||||||||||||||||||| |||||| |  |||||||||||    
T  37169011 gggcacttgcccgggctccgggccaaattttttgcaattttttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttac 37169110  T
Q  128 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  37169111 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgtggcaaa 37169165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 28 - 178
Target Start/End: Complemental strand, 15631764 - 15631613
Alignment:
Q  28 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccc-tctaaatttgataatttcttta 126  Q
    ||||||||| ||||||||| || |||||||||||||||||||||| ||||| ||||||||||||||||||||||||| | |||||| || ||||||||||    
T  15631764 gggcactcgcccgggctccaggccaaattttttacaatttcttgtataaatccctatgaatttcttatataaaccccctataaattggacaatttcttta 15631665  T
Q  127 cattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttg 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  15631664 cattttttattatttgcttgcaatttcttatgtacgccctataaatgcgttg 15631613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 28 - 182
Target Start/End: Original strand, 39862465 - 39862619
Alignment:
Q  28 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 127  Q
    ||||||||| ||| |||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |  ||||||||||     
T  39862465 gggcactcgcccgagctccgggccaatttttttgcaatttcttgtgtaaattcctatgaatttcttatataaacccctataaattgggcaatttctttag 39862564  T
Q  128 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 182  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  39862565 attttttattatttgcttgcaatttcttatatacgccctaaaaatgtgttgcaaa 39862619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 30 - 181
Target Start/End: Original strand, 8456943 - 8457096
Alignment:
Q  30 gcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttaca- 128  Q
    ||||||| |||||||||||  |||||||||| ||||||||| ||||||| |||||||||||||||||||| ||||| |||||| |  |||||||||| |     
T  8456943 gcactcgcccgggctccggcccaaatttttttcaatttcttatgtaaatccctatgaatttcttatataaccccctataaattgggcaatttctttagat 8457042  T
Q  129 ttttttattatttgcttgcaatttcttatgt-acgccctataaatgtgttgcaa 181  Q
    ||||||||||||||||||||||||||||||| |  |||||||||| ||||||||    
T  8457043 ttttttattatttgcttgcaatttcttatgtaaacccctataaatatgttgcaa 8457096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 29 - 182
Target Start/End: Original strand, 36769053 - 36769207
Alignment:
Q  29 ggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttaca 128  Q
    |||||| |||||| ||||||  |||||||||| ||||||||| ||||||||||| ||||||||||||||||||| || | |||| |  |||||||||| |    
T  36769053 ggcacttgtccggactccggcccaaattttttgcaatttcttatgtaaattcctctgaatttcttatataaacctctatgaattaggcaatttctttaga 36769152  T
Q  129 ttttttattatttgcttgcaatttcttatgt-acgccctataaatgtgttgcaaa 182  Q
    ||||| ||||||||||||||||||| ||||| |  ||||||||||||||||||||    
T  36769153 tttttgattatttgcttgcaatttcatatgtaaacccctataaatgtgttgcaaa 36769207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 31 - 181
Target Start/End: Original strand, 25560309 - 25560460
Alignment:
Q  31 cactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacatt 130  Q
    |||||||||||||||||| |||| |||||| ||||||||| ||||||| | ||| ||||||||||||||||  || |||||| || |||||||||| |||    
T  25560309 cactcgtccgggctccggctcaattttttt-caatttcttatgtaaatccttataaatttcttatataaacatctataaattggacaatttctttagatt 25560407  T
Q  131 -ttttattatttgcttgcaatttcttatgtacgccc-tataaatgtgttgcaa 181  Q
     ||||||||||||||||||||||||||||||  ||| ||||||||||||||||    
T  25560408 attttattatttgcttgcaatttcttatgtaaacccatataaatgtgttgcaa 25560460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 48 - 178
Target Start/End: Original strand, 614390 - 614522
Alignment:
Q  48 ggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttaca-ttttttattatttgcttg 146  Q
    |||||| |||||| ||||||||| ||||||||||| ||||||| ||||||||| |||| ||||||||  |||||||||| | ||||||||||||||||||    
T  614390 ggtcaatttttttgcaatttcttatgtaaattcctctgaattttttatataaatccctataaatttggcaatttctttagatttttttattatttgcttg 614489  T
Q  147 caatttcttatgtacgc-cctataaatgtgttg 178  Q
    ||||||||||||||  | |||||||||||||||    
T  614490 caatttcttatgtaaacacctataaatgtgttg 614522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 55 - 181
Target Start/End: Complemental strand, 10081268 - 10081140
Alignment:
Q  55 ttttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttaca-ttttttattatttgcttgcaatttc 153  Q
    |||||| ||||||||| ||||||| |||||||||||||||||||||||||| |||||| |  |||||||||| | ||||||||||||||||| |||||||    
T  10081268 tttttttcaatttcttatgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttagatttttttattatttgcttacaatttc 10081169  T
Q  154 ttatgtacgc-cctataaatgtgttgcaa 181  Q
    |||||||  | ||||||||||||||||||    
T  10081168 ttatgtaaactcctataaatgtgttgcaa 10081140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 38 - 157
Target Start/End: Original strand, 33271258 - 33271377
Alignment:
Q  38 ccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacattttttatt 137  Q
    |||| ||||||  ||| |||||||||||||||| ||||||||||  ||||||||||||||||||| || |||||| || |||||||||| ||||||||||    
T  33271258 ccggactccggcccaatttttttacaatttcttatgtaaattccgttgaatttcttatataaacctctataaattggacaatttctttatattttttatt 33271357  T
Q  138 atttgcttgcaatttcttat 157  Q
    ||||| ||| ||||||||||    
T  33271358 atttgtttgtaatttcttat 33271377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 53 - 181
Target Start/End: Complemental strand, 42119747 - 42119617
Alignment:
Q  53 aattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttaca-ttttttattatttgcttgcaatt 151  Q
    ||||||||  |||||||| ||||||||||| ||||||||||||||||||| || |||||| || |||||||||| | |||||||||||||| ||| ||||    
T  42119747 aattttttgtaatttcttatgtaaattcctctgaatttcttatataaacctctataaattggacaatttctttagatttttttattatttgtttgtaatt 42119648  T
Q  152 tcttatgt-acgccctataaatgtgttgcaa 181  Q
    |||||||| |  |||||||||||||||||||    
T  42119647 tcttatgtaaacccctataaatgtgttgcaa 42119617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 51 - 160
Target Start/End: Complemental strand, 6174873 - 6174762
Alignment:
Q  51 caaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctcta--aatttgataatttctttacattttttattatttgcttgca 148  Q
    ||||||||||  ||||||||  |||||||| | ||||||||||||||||||||| |||  |||| || |||||||||| |||||||||||||||||||||    
T  6174873 caaattttttgtaatttcttacgtaaattcttctgaatttcttatataaacccccctataaattggacaatttctttatattttttattatttgcttgca 6174774  T
Q  149 atttcttatgta 160  Q
    ||||| ||||||    
T  6174773 atttcctatgta 6174762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 31 - 158
Target Start/End: Original strand, 29491395 - 29491521
Alignment:
Q  31 cactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacatt 130  Q
    |||||||||||||| | |  ||||| |||| ||||||||| |||||||| ||||||||||||||||| ||||||| |||||| || || ||||||| |||    
T  29491395 cactcgtccgggcttcagcccaaatcttttgcaatttcttatgtaaatttctatgaatttcttatat-aacccctataaattggacaa-ttctttaaatt 29491492  T
Q  131 tttt-attatttgcttgcaatttcttatg 158  Q
    |||| ||||||||||||||||||||||||    
T  29491493 ttttgattatttgcttgcaatttcttatg 29491521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 38 - 152
Target Start/End: Complemental strand, 10115300 - 10115185
Alignment:
Q  38 ccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacatttttt-at 136  Q
    |||||||||||  ||| |||||| |||||| || ||||||||||| || ||||||||||||||||||  |||||| || |||||||||| ||||||| ||    
T  10115300 ccgggctccggcccaatttttttgcaattttttatgtaaattcctctggatttcttatataaaccccaataaattagacaatttctttagattttttaat 10115201  T
Q  137 tatttgcttgcaattt 152  Q
    ||||||||||||||||    
T  10115200 tatttgcttgcaattt 10115185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 52 - 182
Target Start/End: Complemental strand, 27916266 - 27916133
Alignment:
Q  52 aaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttaca-ttttttattatttgcttgcaat 150  Q
    ||||||||| ||||||||| ||||||||||| |||||||||||||||||| ||| ||||||    |||||| ||| | |||||||||||||| |||||||    
T  27916266 aaattttttgcaatttcttatgtaaattcctctgaatttcttatataaactcctataaattgagcaatttcattagatttttttattatttgtttgcaat 27916167  T
Q  151 ttcttatgt--acgccctataaatgtgttgcaaa 182  Q
    ||||||| |  ||  |||||||||||||||||||    
T  27916166 ttcttatataaacctcctataaatgtgttgcaaa 27916133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 55 - 160
Target Start/End: Original strand, 9737986 - 9738094
Alignment:
Q  55 ttttttacaatttcttgtgtaaa--ttcctatgaatttcttatataaacccctctaaatttgataatttctttacatttttt-attatttgcttgcaatt 151  Q
    |||||| ||||||||| ||||||  | ||||||||||||||||||||| |||| |||||| || |||||||||| |||||||  ||||||||||||||||    
T  9737986 tttttttcaatttcttatgtaaaaatccctatgaatttcttatataaatccctataaattggacaatttctttagattttttgtttatttgcttgcaatt 9738085  T
Q  152 tcttatgta 160  Q
    |||||||||    
T  9738086 tcttatgta 9738094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 51 - 160
Target Start/End: Original strand, 29790220 - 29790328
Alignment:
Q  51 caaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacattttttattatttgcttgcaat 150  Q
    |||| ||||||||||||||| ||||||||| |||||||||||||||||||||  | |||||| |  ||||||||||  ||||| |||||||||||  |||    
T  29790220 caaaatttttacaatttcttatgtaaattcttatgaatttcttatataaacctttataaattgggcaatttcttta-gtttttgattatttgcttttaat 29790318  T
Q  151 ttcttatgta 160  Q
    ||||||||||    
T  29790319 ttcttatgta 29790328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 39 - 155
Target Start/End: Original strand, 10052489 - 10052606
Alignment:
Q  39 cgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttcttt-acattttttatt 137  Q
    ||||||||||  ||| |||||||||||||||| ||||||| ||| |||| | |||||||||||  || |||||| | |||||||||| | |||||  |||    
T  10052489 cgggctccggcccaatttttttacaatttcttatgtaaatccctctgaactacttatataaacgtctataaattaggtaatttctttaaaattttagatt 10052588  T
Q  138 atttgcttgcaatttctt 155  Q
    ||||||||||||||||||    
T  10052589 atttgcttgcaatttctt 10052606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 63 - 181
Target Start/End: Complemental strand, 11856410 - 11856290
Alignment:
Q  63 aatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacatttttt-attatttgcttgcaatttcttatgtac 161  Q
    |||||||| |||||||  || ||||||||||||||||| | || |||||| |  |||||||||| ||||||| ||||||| ||||||||||||||||||     
T  11856410 aatttcttatgtaaatcgctctgaatttcttatataaatcactataaattgggcaatttctttagattttttgattatttacttgcaatttcttatgtaa 11856311  T
Q  162 gc-cctataaatgtgttgcaa 181  Q
     | ||||||||| ||||||||    
T  11856310 actcctataaatatgttgcaa 11856290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 160
Target Start/End: Original strand, 3341121 - 3341230
Alignment:
Q  51 caaattttttacaatttcttgtgtaaattcctatgaatttctt-atataaacccctctaaatttgataatttctttacattttttattatttgcttgcaa 149  Q
    |||||||||| ||||||||| ||||||||| | ||||||| || |||||| ||||| |||||| |  ||||||||||  ||||| ||||||||||| |||    
T  3341121 caaattttttgcaatttcttatgtaaattc-tctgaatttttttatataatcccctataaattgggaaatttctttagctttttgattatttgctttcaa 3341219  T
Q  150 tttcttatgta 160  Q
    ||| |||||||    
T  3341220 ttttttatgta 3341230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 110
Target Start/End: Original strand, 33188330 - 33188383
Alignment:
Q  57 ttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaa 110  Q
    |||| ||||||||| ||||||||| | | |||||||||||||||||||| ||||    
T  33188330 ttttgcaatttcttatgtaaattcatctaaatttcttatataaacccctataaa 33188383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 121; Significance: 4e-62; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 26 - 182
Target Start/End: Original strand, 24694627 - 24694783
Alignment:
Q  26 ctgggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttcttt 125  Q
    ||||||||||| |||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||| ||| |||||| |  |||||||||    
T  24694627 ctgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaactcctataaattgggcaatttcttt 24694726  T
Q  126 acattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24694727 acattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 24694783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 28 - 181
Target Start/End: Original strand, 9231832 - 9231985
Alignment:
Q  28 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 127  Q
    ||||||||| |||||||||||| ||| |||||| |||||||||||||||||  ||||||||||||||||||||||||| |||||| |  |||||||||||    
T  9231832 gggcactcgcccgggctccgggccaatttttttgcaatttcttgtgtaaatctctatgaatttcttatataaacccctataaattgggcaatttctttac 9231931  T
Q  128 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 181  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  9231932 attttttattatttgcttgcaatttcttatgtatgccctataaatgtgttgcaa 9231985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 30 - 183
Target Start/End: Complemental strand, 13627688 - 13627535
Alignment:
Q  30 gcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacat 129  Q
    |||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||    |||||||||||||    
T  13627688 gcactcgtccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgagcaatttctttacat 13627589  T
Q  130 tttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaaa 183  Q
    ||||||||||||||||| | ||||||||||||| ||||||||| ||||||||||    
T  13627588 tttttattatttgcttgtactttcttatgtacgtcctataaatatgttgcaaaa 13627535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 46 - 182
Target Start/End: Original strand, 14309794 - 14309930
Alignment:
Q  46 cgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacattttttattatttgctt 145  Q
    |||| |||||||||| ||||||||||||||||| ||||||||||||||||||||| |||| |||||| |  |||||||||||||||||||||||||||||    
T  14309794 cgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatttgctt 14309893  T
Q  146 gcaatttcttatgtacgccctataaatgtgttgcaaa 182  Q
    |||||||||||||||||||||||||||||||||||||    
T  14309894 gcaatttcttatgtacgccctataaatgtgttgcaaa 14309930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 30 - 152
Target Start/End: Original strand, 1727913 - 1728035
Alignment:
Q  30 gcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacat 129  Q
    ||||||| || ||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||    |||||||||||||    
T  1727913 gcactcgcccaggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgagcaatttctttacat 1728012  T
Q  130 tttttattatttgcttgcaattt 152  Q
    |||||||||||| ||||||||||    
T  1728013 tttttattatttccttgcaattt 1728035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 65 - 182
Target Start/End: Complemental strand, 27863812 - 27863694
Alignment:
Q  65 tttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacattttttattatttgcttgcaatttcttatgtacgc- 163  Q
    |||||| |||||||| || |||||||||||||||||||| | |||||| || |||||||||| ||||||||||||||| |||||||||||||||||  |     
T  27863812 tttcttatgtaaatttctctgaatttcttatataaacccttataaattggacaatttctttagattttttattatttgtttgcaatttcttatgtaaaca 27863713  T
Q  164 cctataaatgtgttgcaaa 182  Q
     ||||||||||||||||||    
T  27863712 tctataaatgtgttgcaaa 27863694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 39 - 181
Target Start/End: Original strand, 28750639 - 28750783
Alignment:
Q  39 cgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacatttttt-att 137  Q
    ||||||| ||| ||| |||||| ||||||||| ||||||||| | |||||||||||||||||||||| |||||| |  ||||||||||  |||||| |||    
T  28750639 cgggctctgggccaatttttttgcaatttcttatgtaaattcttctgaatttcttatataaacccctataaattgggcaatttctttaatttttttgatt 28750738  T
Q  138 atttgcttgcaatttcttatgtacgc-cctataaatgtgttgcaa 181  Q
    ||||||||| |||||||||||||  | | ||||||||||||||||    
T  28750739 atttgcttgtaatttcttatgtaaactcttataaatgtgttgcaa 28750783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 41 - 176
Target Start/End: Original strand, 13103109 - 13103246
Alignment:
Q  41 ggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacatttttt-attat 139  Q
    ||||| || ||||||||||| |||||| || ||||||||||| |||||||||||||||||||  | |||||| |  |||||||||| ||||||| |||||    
T  13103109 ggctctggctcaaattttttgcaattttttatgtaaattcctctgaatttcttatataaacctttataaattgggcaatttctttagattttttgattat 13103208  T
Q  140 ttgcttgcaatttcttatgtacgc-cctataaatgtgt 176  Q
    ||||||||||||||| |||||  | |||||||||||||    
T  13103209 ttgcttgcaatttctaatgtaaacacctataaatgtgt 13103246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 63 - 160
Target Start/End: Complemental strand, 34103800 - 34103703
Alignment:
Q  63 aatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacattttttattatttgcttgcaatttcttatgta 160  Q
    ||||| || ||||||||||| |||||||||||||||||||| | |||||| |  |||||||||| ||||||||||||||| |||||||||||||||||    
T  34103800 aatttattatgtaaattcctctgaatttcttatataaacccgtataaattgggaaatttctttagattttttattatttgtttgcaatttcttatgta 34103703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 129 - 182
Target Start/End: Complemental strand, 11084659 - 11084606
Alignment:
Q  129 ttttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11084659 ttttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 11084606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 84 - 181
Target Start/End: Complemental strand, 11279634 - 11279536
Alignment:
Q  84 tgaatttcttatataaacccctctaaatttgataatttctttacattttttattatttgcttgcaatttcttatgt-acgccctataaatgtgttgcaa 181  Q
    ||||||| |||||||||  | | |||||||| ||||||||||| |||||||||||||||||||||||||||||||| |  | |||||||||||||||||    
T  11279634 tgaattttttatataaattcttataaatttggtaatttctttagattttttattatttgcttgcaatttcttatgtaaatctctataaatgtgttgcaa 11279536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 41 - 112
Target Start/End: Original strand, 24497565 - 24497636
Alignment:
Q  41 ggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatt 112  Q
    ||||||||  |||||||||| |||||| |||||||||||||| |||||||||||||||||||||| ||||||    
T  24497565 ggctccggcccaaattttttgcaattttttgtgtaaattcctctgaatttcttatataaacccctataaatt 24497636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 38 - 104
Target Start/End: Complemental strand, 11084730 - 11084664
Alignment:
Q  38 ccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccc 104  Q
    ||||| |||| | ||| |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  11084730 ccgggttccgagccaatttttttgcaatttcttgtgtaaattcctatgaatttcttatataaacccc 11084664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 84 - 160
Target Start/End: Complemental strand, 11212765 - 11212689
Alignment:
Q  84 tgaatttcttatataaacccctctaaatttgataatttctttacattttttattatttgcttgcaatttcttatgta 160  Q
    ||||||| || |||||| |||| |||||| |  |||||||||| |||||| |||||||||||| |||||||||||||    
T  11212765 tgaattttttctataaatccctataaattgggcaatttctttagatttttaattatttgcttgtaatttcttatgta 11212689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 178
Target Start/End: Original strand, 24500767 - 24500830
Alignment:
Q  117 aatttctttacatttt-ttattatttgcttgcaatttcttatgtacgccc-tataaatgtgttg 178  Q
    |||||||||| ||||| ||||||||||||||||||||| ||||||  ||| |||||||||||||    
T  24500767 aatttctttagatttttttattatttgcttgcaatttcatatgtaaacccttataaatgtgttg 24500830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 121; Significance: 4e-62; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 26 - 182
Target Start/End: Complemental strand, 5391609 - 5391453
Alignment:
Q  26 ctgggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttcttt 125  Q
    ||||||||||| |||||||||| | ||| ||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||| || |||||||||    
T  5391609 ctgggcactcgcccgggctccgcgccaattttttgacaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattggacaatttcttt 5391510  T
Q  126 acattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5391509 acattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 5391453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 15 - 182
Target Start/End: Complemental strand, 32353010 - 32352843
Alignment:
Q  15 caggggcggttctgggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttg 114  Q
    |||||||||||| ||||||||| |||||||||||| ||| |||||| ||||||||||| ||||| |||||||||||||||||||||||||| |||||| |    
T  32353010 caggggcggttccgggcactcgcccgggctccgggccaatttttttgcaatttcttgtataaatccctatgaatttcttatataaacccctataaattag 32352911  T
Q  115 ataatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 182  Q
      ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  32352910 gcaatttctttacattttttattatttgcttacaatttcttatgtacgccctataaatgtgttgcaaa 32352843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 28 - 181
Target Start/End: Complemental strand, 13856249 - 13856096
Alignment:
Q  28 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 127  Q
    ||||||| | |||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||| |||| |||||| || |||||||||||    
T  13856249 gggcacttgcccgggctccgggccaaatttttttcaatttcttgtgtaaatccctatgaatttcttatataaatccctataaattggacaatttctttac 13856150  T
Q  128 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13856149 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 13856096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 28 - 181
Target Start/End: Complemental strand, 21853347 - 21853194
Alignment:
Q  28 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 127  Q
    ||||||||| |||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||| |||| |||||| |  |||||||||||    
T  21853347 gggcactcggccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaaaccctataaattgggcaatttctttac 21853248  T
Q  128 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21853247 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 21853194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 28 - 182
Target Start/End: Original strand, 40845895 - 40846049
Alignment:
Q  28 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 127  Q
    ||||| ||| ||||| ||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||| |||||| |  |||||||||||    
T  40845895 gggcattcgcccgggttccgggtcaaattttttgcaattttttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttac 40845994  T
Q  128 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40845995 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 40846049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 28 - 182
Target Start/End: Original strand, 8950482 - 8950636
Alignment:
Q  28 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 127  Q
    ||||||||| |||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||| |  |||||||||||    
T  8950482 gggcactcgcccgggctctgggccaaattttttgcaatttcttgtgtaaattcctatgaatttcttatataaatccctataaattgggcaatttctttac 8950581  T
Q  128 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 182  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  8950582 attttttattatttgcttgaaatttcttatgtacgccctataaatatgttgcaaa 8950636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 39 - 182
Target Start/End: Original strand, 44994957 - 44995101
Alignment:
Q  39 cgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctc-taaatttgataatttctttacattttttatt 137  Q
    ||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||  |||||| |  |||||||||||||||||||||    
T  44994957 cgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaaccccttataaattgggcaatttctttacattttttatt 44995056  T
Q  138 atttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  44995057 atttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 44995101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 63 - 184
Target Start/End: Original strand, 23467507 - 23467628
Alignment:
Q  63 aatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacattttttattatttgcttgcaatttcttatgtacg 162  Q
    ||||| |||||||||| |||||||||||||||||||||||||| |||||| |  ||||||||||||||||||||||||||||||||||||||||||||||    
T  23467507 aattttttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgtacg 23467606  T
Q  163 ccctataaatgtgttgcaaaaa 184  Q
    ||||||||||||||||||||||    
T  23467607 ccctataaatgtgttgcaaaaa 23467628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 27 - 181
Target Start/End: Original strand, 43347313 - 43347468
Alignment:
Q  27 tgggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttcttta 126  Q
    |||||| | ||||||||||||   |||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||  ||||| |  ||||||||||    
T  43347313 tgggcagttgtccgggctccgacccaaattttttgcaatttcttatgtaaattcctctgaatttcttatataaacccctacaaattgggcaatttcttta 43347412  T
Q  127 catttttt-attatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 181  Q
     ||||||| ||||||||||||||||||||||||||  |||||||| | ||||||||    
T  43347413 gattttttgattatttgcttgcaatttcttatgtaaaccctataattatgttgcaa 43347468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 28 - 181
Target Start/End: Complemental strand, 20382668 - 20382514
Alignment:
Q  28 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 127  Q
    ||||||| | |||||||||||  ||||||||||  |||||||| ||||||| |||||||||||||||||||||||||| |||||| |  ||||||||||     
T  20382668 gggcacttgcccgggctccggcccaaattttttt-aatttcttatgtaaatccctatgaatttcttatataaacccctataaattgggaaatttctttag 20382570  T
Q  128 a-ttttttattatttgcttgcaatttcttatgtacgc-cctataaatgtgttgcaa 181  Q
    | ||||||||||||||||||||||||||||||||  | |||||||||| |||||||    
T  20382569 atttttttattatttgcttgcaatttcttatgtaaactcctataaatgcgttgcaa 20382514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 51 - 172
Target Start/End: Original strand, 22845363 - 22845484
Alignment:
Q  51 caaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacattttttattatttgcttgcaat 150  Q
    |||||||||| ||||||||| |||||||||   | |||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||    
T  22845363 caaattttttgcaatttcttatgtaaattcacctaaatttcttatataaacccctataaatttgacaatttctttagattttttattatttgcttgcaat 22845462  T
Q  151 ttcttatgtacgccctataaat 172  Q
    || |||| ||  ||||||||||    
T  22845463 tttttatataaaccctataaat 22845484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 34 - 181
Target Start/End: Complemental strand, 3178847 - 3178699
Alignment:
Q  34 tcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacattttt 133  Q
    ||||| |||||||||  |||||||||| ||||||||||||||||| ||||||||||||||||||||| | || |||||| |  ||||||||||  |||||    
T  3178847 tcgtctgggctccggcccaaatttttttcaatttcttgtgtaaatccctatgaatttcttatataaatctctataaattgggcaatttctttagtttttt 3178748  T
Q  134 tattatttgcttgcaatttcttatgtacgc-cctataaatgtgttgcaa 181  Q
    | |||||||||||||||||| ||||||  | ||||||||| ||||||||    
T  3178747 ttttatttgcttgcaatttcgtatgtaaactcctataaatatgttgcaa 3178699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 37 - 181
Target Start/End: Original strand, 19649359 - 19649506
Alignment:
Q  37 tccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacatttttt-- 134  Q
    ||||||||||||  ||| ||||||  |||||||| |||||||  ||||||||||||||||||||||| | |||||| || |||||||||| |||||||      
T  19649359 tccgggctccggcacaacttttttgtaatttcttatgtaaatcgctatgaatttcttatataaacccttataaattggacaatttctttagattttttgg 19649458  T
Q  135 attatttgcttgcaatttcttatgt-acgccctataaatgtgttgcaa 181  Q
    ||||||||||||||||||||||||| |  |||||||||||||||||||    
T  19649459 attatttgcttgcaatttcttatgtaattccctataaatgtgttgcaa 19649506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 55 - 177
Target Start/End: Complemental strand, 54547027 - 54546904
Alignment:
Q  55 ttttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacattttttattatttgcttgcaatttct 154  Q
    |||||| |||||||||  |||||||||| |||||||||||||||||||||| |||||| || |||||||||| |||||| ||||||||||| ||||||||    
T  54547027 ttttttgcaatttcttacgtaaattcctttgaatttcttatataaacccctataaattggacaatttctttagatttttgattatttgcttacaatttct 54546928  T
Q  155 tatgt-acgccctataaatgtgtt 177  Q
    ||||| |  |||||||||||||||    
T  54546927 tatgtaaatccctataaatgtgtt 54546904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 38 - 182
Target Start/End: Original strand, 10839368 - 10839514
Alignment:
Q  38 ccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacatttttt-at 136  Q
    ||||||||||   |||||||||| ||||||||| |||||||| || ||||||||||||||||||| || |||||| |  |||||||||| ||||||| ||    
T  10839368 ccgggctccgacccaaattttttgcaatttcttatgtaaatttctctgaatttcttatataaacctctataaattgggcaatttctttagattttttgat 10839467  T
Q  137 tatttgcttgcaatttcttatgtacgc-cctataaatgtgttgcaaa 182  Q
    ||||||||||||||||||||||||  | |||||| ||||||||||||    
T  10839468 tatttgcttgcaatttcttatgtaaacacctatacatgtgttgcaaa 10839514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 51 - 181
Target Start/End: Complemental strand, 1781889 - 1781757
Alignment:
Q  51 caaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacatttttt-attatttgcttgcaa 149  Q
    |||||||||| ||||||||| ||||||| ||| |||||||||||||||||||||  |||||| |  |||||||||| ||||||| |||||||||||||||    
T  1781889 caaattttttgcaatttcttatgtaaatccctctgaatttcttatataaaccccaataaattgggcaatttctttagattttttgattatttgcttgcaa 1781790  T
Q  150 tttcttatgt-acgccctataaatgtgttgcaa 181  Q
    |||| ||||| |  |||||||||||||||||||    
T  1781789 tttcgtatgtaaacccctataaatgtgttgcaa 1781757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 55 - 182
Target Start/End: Complemental strand, 33103866 - 33103738
Alignment:
Q  55 ttttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacattttttattatttgcttgcaatttct 154  Q
    |||||| ||||||||| ||||||||||  | ||||||||||||||  |||| |||||| |||||||| |||| ||||||||||||||||||| |||||||    
T  33103866 ttttttgcaatttcttatgtaaattcccttaaatttcttatataagtccctataaattggataatttatttaaattttttattatttgcttgtaatttct 33103767  T
Q  155 tatgt-acgccctataaatgtgttgcaaa 182  Q
    ||||| |  || |||||||||||||||||    
T  33103766 tatgtaaatccttataaatgtgttgcaaa 33103738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 55 - 180
Target Start/End: Complemental strand, 8926889 - 8926762
Alignment:
Q  55 ttttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacatttttt-attatttgcttgcaatttc 153  Q
    |||||| ||||||| | ||||||||||| ||||||||| |||||||||||| ||||||||  ||||||| || ||||||| |||||||||||||||||||    
T  8926889 ttttttgcaatttcatatgtaaattcctctgaatttctgatataaacccctataaatttggcaatttctgtagattttttgattatttgcttgcaatttc 8926790  T
Q  154 ttatg-tacgccctataaatgtgttgca 180  Q
    ||||| ||  || |||||||||||||||    
T  8926789 ttatgttaacccttataaatgtgttgca 8926762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 28 - 181
Target Start/End: Complemental strand, 36539782 - 36539627
Alignment:
Q  28 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 127  Q
    ||||| ||| |||||||||||   ||||||| | ||||||||| ||||||| ||||| |||||||||||||| ||||| |||||| |  ||||||||||     
T  36539782 gggcagtcgcccgggctccggcctaaattttatgcaatttcttatgtaaatccctataaatttcttatataatcccctataaattgggcaatttctttaa 36539683  T
Q  128 atttttt-attatttgcttgcaatttcttatgt-acgccctataaatgtgttgcaa 181  Q
    ||||||| |||||||| |||||||||| ||||| |  |||||||||||||||||||    
T  36539682 attttttgattatttgtttgcaatttcctatgtaaacccctataaatgtgttgcaa 36539627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 51 - 158
Target Start/End: Original strand, 46685785 - 46685891
Alignment:
Q  51 caaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacattttttattatttgcttgcaat 150  Q
    |||||||||| || |||||| ||||||| ||  | |||||||||||||||| ||| ||||||||| |||||||||| ||||||||||||||| |||||||    
T  46685785 caaattttttgca-tttcttatgtaaatccccctaaatttcttatataaactcctataaatttgacaatttctttatattttttattatttgtttgcaat 46685883  T
Q  151 ttcttatg 158  Q
    ||||||||    
T  46685884 ttcttatg 46685891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 63 - 182
Target Start/End: Complemental strand, 48206968 - 48206848
Alignment:
Q  63 aatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacatttttt-attatttgcttgcaatttcttatgtac 161  Q
    ||||| || ||||||||||| |||||| ||||||||||||||| ||||||||| ||||| |||| ||||||| ||||||| ||||||||||||||||||     
T  48206968 aattttttatgtaaattcctctgaatt-cttatataaacccctataaatttgacaatttttttagattttttgattatttacttgcaatttcttatgtaa 48206870  T
Q  162 gc-cctataaatgtgttgcaaa 182  Q
     | | |||||||||||||||||    
T  48206869 acacttataaatgtgttgcaaa 48206848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 52 - 182
Target Start/End: Original strand, 6280361 - 6280492
Alignment:
Q  52 aaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacattttttattatttgcttgcaatt 151  Q
    ||||||| | ||||||||| |||||||| |  ||||||||||||||||||| || ||||||||| ||||| |||| |||||| || |||||||||| |||    
T  6280361 aaattttgtgcaatttcttatgtaaatttccctgaatttcttatataaacctctataaatttgacaatttatttagatttttgataatttgcttgccatt 6280460  T
Q  152 tcttatgtacgcc-ctataaatgtgttgcaaa 182  Q
    | |||||||  ||  |||||||||||||||||    
T  6280461 ttttatgtaaacctttataaatgtgttgcaaa 6280492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 55 - 156
Target Start/End: Complemental strand, 51336332 - 51336231
Alignment:
Q  55 ttttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacattttttattatttgcttgcaatttct 154  Q
    |||||| |||||| || |||||||||   ||||||| ||||||||| |  | ||||||||| |||||||||| |||||||||||||| ||||||||||||    
T  51336332 ttttttgcaattttttatgtaaattctcctgaattttttatataaatctttataaatttgacaatttctttaaattttttattatttacttgcaatttct 51336233  T
Q  155 ta 156  Q
    ||    
T  51336232 ta 51336231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 171
Target Start/End: Complemental strand, 47889826 - 47889731
Alignment:
Q  78 ttcctatgaatttcttatataaacccctctaaatttgataatttctttaca-ttttttattatttgcttg-caatttcttatgtacgccctataaa 171  Q
    |||||||||||||||||||||||  ||| |||||| |  |||||||||| | ||||||||||||| |||| |||||||| |||||  |||||||||    
T  47889826 ttcctatgaatttcttatataaattcctataaattgggcaatttctttaaatttttttattatttacttgacaatttctaatgtaaaccctataaa 47889731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 100
Target Start/End: Complemental strand, 27642798 - 27642738
Alignment:
Q  40 gggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaa 100  Q
    ||||||| | ||||||||||| ||||||||| ||||||| | | |||||||||||||||||    
T  27642798 gggctcctgctcaaattttttgcaatttcttatgtaaatccttttgaatttcttatataaa 27642738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 134
Target Start/End: Complemental strand, 50663257 - 50663178
Alignment:
Q  55 ttttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacatttttt 134  Q
    |||||| ||||||||| |||| |||||| | |||||||||||||||||| | ||||||  | |||||||||  |||||||    
T  50663257 ttttttgcaatttcttatgtagattcctctaaatttcttatataaacccttataaattgaaaaatttctttgtatttttt 50663178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 181
Target Start/End: Original strand, 36826021 - 36826087
Alignment:
Q  117 aatttctttacattttttatt-atttgcttgcaatttcttatgt-acgccctataaatgtgttgcaa 181  Q
    |||||||||| |||||||| | ||||||||||| |||||||||| |  |||||||||||||||||||    
T  36826021 aatttctttaaattttttaatgatttgcttgcagtttcttatgtaaacccctataaatgtgttgcaa 36826087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 28 - 182
Target Start/End: Complemental strand, 3346936 - 3346782
Alignment:
Q  28 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 127  Q
    ||||||||| ||| ||| |||| |||||||||| |||||| |||||||||| |||||||||||||||||||||||||| |||||| || |||||||||||    
T  3346936 gggcactcgcccgagcttcgggccaaattttttgcaatttgttgtgtaaatccctatgaatttcttatataaacccctataaattggacaatttctttac 3346837  T
Q  128 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3346836 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 3346782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 28 - 178
Target Start/End: Complemental strand, 5975138 - 5974988
Alignment:
Q  28 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 127  Q
    ||||||||| |||||||||||| |||||||||| ||||||||||||||||| |||| ||||||||||||||||||||| |||||| |  |||||||||||    
T  5975138 gggcactcgcccgggctccgggccaaatttttttcaatttcttgtgtaaatccctaagaatttcttatataaacccctataaattaggcaatttctttac 5975039  T
Q  128 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttg 178  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5975038 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttg 5974988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 28 - 182
Target Start/End: Original strand, 10155994 - 10156148
Alignment:
Q  28 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 127  Q
    ||||||||| |||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||  || |||||| || ||||||||||     
T  10155994 gggcactcgcccgggctccgggccaatttttttgcaatttcttgtgtaaattcctatgaatttcttatataaacttctataaattggacaatttctttat 10156093  T
Q  128 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10156094 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 10156148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 28 - 182
Target Start/End: Complemental strand, 49902618 - 49902464
Alignment:
Q  28 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 127  Q
    |||||||||  ||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||  |  |||||||||||    
T  49902618 gggcactcgctcgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaatagggcaatttctttac 49902519  T
Q  128 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49902518 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 49902464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 28 - 182
Target Start/End: Original strand, 42517272 - 42517430
Alignment:
Q  28 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaac----ccctctaaatttgataatttct 123  Q
    ||||||||| |||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||    |||| |||||| |  |||||||    
T  42517272 gggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacaaacccctataaattgggcaatttct 42517371  T
Q  124 ttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42517372 ttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 42517430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 28 - 182
Target Start/End: Original strand, 7742757 - 7742911
Alignment:
Q  28 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 127  Q
    ||||||||| |||||||||| |  || |||||| ||||||||||||||||| | |||||||||||||||||||||||| |||||| |  |||||||||||    
T  7742757 gggcactcgcccgggctccgagcaaatttttttgcaatttcttgtgtaaatccttatgaatttcttatataaacccctataaattgggcaatttctttac 7742856  T
Q  128 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7742857 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 7742911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 28 - 182
Target Start/End: Original strand, 48392384 - 48392538
Alignment:
Q  28 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 127  Q
    ||||||||| |||||||||| | ||| |||||| ||||||||||||||||| ||||||||||||||||||||| |||| |||||| |  |||||| ||||    
T  48392384 gggcactcgcccgggctccgagccaatttttttgcaatttcttgtgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcattac 48392483  T
Q  128 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48392484 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 48392538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 28 - 182
Target Start/End: Complemental strand, 47022852 - 47022698
Alignment:
Q  28 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 127  Q
    ||||||||| |||||||||||| |||||||||| |||||||||||||||||  ||||||||||||||||||||| ||| |||||| |  ||||||||||     
T  47022852 gggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatctctatgaatttcttatataaactcctataaattaggcaatttctttat 47022753  T
Q  128 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 182  Q
    |||||||||||||| |||| ||||||||||||||||||||||||| |||||||||    
T  47022752 attttttattatttacttgtaatttcttatgtacgccctataaatatgttgcaaa 47022698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 63 - 181
Target Start/End: Complemental strand, 23908400 - 23908282
Alignment:
Q  63 aatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacattttttattatttgcttgcaatttcttatgtacg 162  Q
    ||||| |||||||||||||||||||||||||||||||| |||| |||||| || ||||||||||  ||||||||||||||||||||||||||||||||||    
T  23908400 aattttttgtgtaaattcctatgaatttcttatataaatccctataaattggacaatttctttatgttttttattatttgcttgcaatttcttatgtacg 23908301  T
Q  163 ccctataaatgtgttgcaa 181  Q
    |||||||||||||||||||    
T  23908300 ccctataaatgtgttgcaa 23908282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 63 - 182
Target Start/End: Original strand, 29149561 - 29149680
Alignment:
Q  63 aatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacattttttattatttgcttgcaatttcttatgtacg 162  Q
    ||||| |||||||||| |||||||||||||||||||||||||| |||||| |  ||||||||||| ||||||||||||||||||||||||||||||||||    
T  29149561 aattttttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttacgttttttattatttgcttgcaatttcttatgtacg 29149660  T
Q  163 ccctataaatgtgttgcaaa 182  Q
    ||||||| ||||||||||||    
T  29149661 ccctatacatgtgttgcaaa 29149680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 28 - 178
Target Start/End: Complemental strand, 38860001 - 38859849
Alignment:
Q  28 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 127  Q
    ||||||||| |||||||||||  |||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||| |  ||||| ||||     
T  38860001 gggcactcgcccgggctccggcccaaatttttttcaatttcttatgtaaattcctatgaatttcttatataaacccctataaattgggcaatttttttag 38859902  T
Q  128 a-ttttttattatttgcttgcaatttcttatgt-acgccctataaatgtgttg 178  Q
    | ||||||||||||||||||||||||||||||| |  ||||||||||||||||    
T  38859901 atttttttattatttgcttgcaatttcttatgtaaacccctataaatgtgttg 38859849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 38 - 181
Target Start/End: Original strand, 10907636 - 10907781
Alignment:
Q  38 ccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacatttttt-at 136  Q
    |||||||||||  |||||||||| ||||||||| ||||||||||| |||||||||||||||||||||| |||||  || |||||||||| ||||||| ||    
T  10907636 ccgggctccggcccaaattttttgcaatttcttatgtaaattcctctgaatttcttatataaacccctataaatcagacaatttctttagattttttgat 10907735  T
Q  137 tatttgcttgcaatttcttatgtacgc-cctataaatgtgttgcaa 181  Q
    ||||||||||||||||||||||||  | ||||||||||||||||||    
T  10907736 tatttgcttgcaatttcttatgtagacacctataaatgtgttgcaa 10907781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 55 - 182
Target Start/End: Complemental strand, 26835461 - 26835332
Alignment:
Q  55 ttttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacatttttt-attatttgcttgcaatttc 153  Q
    |||||| |||||| || ||||||||| |||||||||||||||||||| ||| ||||||  | ||||| |||| ||||||| |||||||||||||||||||    
T  26835461 ttttttgcaatttattatgtaaattcatatgaatttcttatataaactcctataaattgaacaatttttttagattttttgattatttgcttgcaatttc 26835362  T
Q  154 ttatgtacgccc-tataaatgtgttgcaaa 182  Q
    | |||||  ||| |||||||||||||||||    
T  26835361 tcatgtaaacccatataaatgtgttgcaaa 26835332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 51 - 181
Target Start/End: Complemental strand, 42456699 - 42456566
Alignment:
Q  51 caaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttcttt-acattttttattatttgcttgcaa 149  Q
    |||||||||| | ||||||| |||||||||||||||||||||||||||||||||| |||||| |  ||||||||| | |   |||||||| | |||||||    
T  42456699 caaattttttgctatttcttatgtaaattcctatgaatttcttatataaacccctataaattgggcaatttctttaaaaaaatttattatctacttgcaa 42456600  T
Q  150 tttcttatgt--acgccctataaatgtgttgcaa 181  Q
    ||||||||||  |  |||||||||||||||||||    
T  42456599 tttcttatgtaaatcccctataaatgtgttgcaa 42456566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 51 - 160
Target Start/End: Complemental strand, 30745471 - 30745361
Alignment:
Q  51 caaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacatttttt-attatttgcttgcaa 149  Q
    ||||| |||| |||||| || |||||||| || |||||||||| |||||| |||| |||||| || |||||||||| ||||||| ||||||| |||||||    
T  30745471 caaatattttgcaattttttatgtaaatttctctgaatttcttttataaatccctataaattggacaatttctttaaattttttgattatttacttgcaa 30745372  T
Q  150 tttcttatgta 160  Q
    |||||||||||    
T  30745371 tttcttatgta 30745361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 51 - 160
Target Start/End: Complemental strand, 30766922 - 30766812
Alignment:
Q  51 caaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacatttttt-attatttgcttgcaa 149  Q
    ||||| |||| |||||| || |||||||| || |||||||||| |||||| |||| |||||| || |||||||||| ||||||| ||||||| |||||||    
T  30766922 caaatattttgcaattttttatgtaaatttctctgaatttcttttataaatccctataaattggacaatttctttaaattttttgattatttacttgcaa 30766823  T
Q  150 tttcttatgta 160  Q
    |||||||||||    
T  30766822 tttcttatgta 30766812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 85 - 153
Target Start/End: Complemental strand, 5558402 - 5558334
Alignment:
Q  85 gaatttcttatataaacccctctaaatttgataatttctttacattttttattatttgcttgcaatttc 153  Q
    ||||||||||||||||||||| |||||| || |||||||||| |||||| |||||||||||||||||||    
T  5558402 gaatttcttatataaacccctataaattggacaatttctttagatttttgattatttgcttgcaatttc 5558334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 66 - 182
Target Start/End: Original strand, 44107404 - 44107522
Alignment:
Q  66 ttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacatttttt-attatttgcttgcaatttcttatgt-acgc 163  Q
    ||||| ||||||||||| ||| ||| |||||||||||||| ||||||   ||||||||| | ||||||| ||||||| ||||||||||||||||| |  |    
T  44107404 ttcttatgtaaattcctctgatttttttatataaacccctataaattaattaatttcttcagattttttgattatttacttgcaatttcttatgtaaaac 44107503  T
Q  164 cctataaatgtgttgcaaa 182  Q
    | |||||||||||||||||    
T  44107504 cttataaatgtgttgcaaa 44107522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 38 - 156
Target Start/End: Original strand, 26511622 - 26511739
Alignment:
Q  38 ccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacattttttatt 137  Q
    |||||||||||   || |||||| ||||||||| ||||||  ||  |||||||||||||||||  ||| ||||||  |||||||||||| |||||| |||    
T  26511622 ccgggctccggcctaatttttttgcaatttcttatgtaaaccccc-tgaatttcttatataaattcctgtaaattgaataatttctttaaatttttgatt 26511720  T
Q  138 atttgcttgcaatttctta 156  Q
    |||| ||| ||||||||||    
T  26511721 atttacttacaatttctta 26511739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 63 - 160
Target Start/End: Complemental strand, 13132011 - 13131914
Alignment:
Q  63 aatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacattttttattatttgcttgcaatttcttatgta 160  Q
    |||||||| ||||||||||| | ||||| ||||||||| | || |||||| || ||||||||||  |||||  |||| | ||||||||||||||||||    
T  13132011 aatttcttatgtaaattcctctaaattttttatataaatcactataaattggacaatttctttagctttttacttatctccttgcaatttcttatgta 13131914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 160
Target Start/End: Original strand, 30252787 - 30252856
Alignment:
Q  92 ttatataaacccctctaaatttgataatttctttacatttttt-attatttgcttgcaatttcttatgta 160  Q
    ||||||||| |||| |||||| || || ||||||| ||||||| ||||||||||||||||||||||||||    
T  30252787 ttatataaatccctataaattagacaacttctttagattttttgattatttgcttgcaatttcttatgta 30252856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 114 - 159
Target Start/End: Original strand, 8430505 - 8430551
Alignment:
Q  114 gataatttctttacatttt-ttattatttgcttgcaatttcttatgt 159  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||    
T  8430505 gataatttctttaaatttttttattatttgcttgcaatttcttatgt 8430551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 121
Target Start/End: Complemental strand, 37189762 - 37189697
Alignment:
Q  56 tttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataattt 121  Q
    ||||| ||||||||| |||||||  |||||||||||||||||||| | || |||||| || |||||    
T  37189762 tttttgcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 37189697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 160
Target Start/End: Complemental strand, 45968794 - 45968685
Alignment:
Q  51 caaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacattttttattatttgcttgcaat 150  Q
    |||||||||| |||| | || ||||| |||   ||||||| |||||||| | | | |||||| || ||||| | || |||||| ||||||| ||||||||    
T  45968794 caaattttttgcaatattttatgtaagttctcctgaattttttatataatctcttataaattggacaatttttatagatttttgattatttacttgcaat 45968695  T
Q  151 ttcttatgta 160  Q
    ||||||||||    
T  45968694 ttcttatgta 45968685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 44 - 155
Target Start/End: Complemental strand, 54653 - 54542
Alignment:
Q  44 tccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacattttttattatttgc 143  Q
    |||||| ||| |||||| |||||| |||||||||||||||||||||| ||||||||| |||| |||||| || |||||||||||||||||||||||||||    
T  54653 tccgggccaatttttttgcaattttttgtgtaaattcctatgaattttttatataaatccctataaattggacaatttctttacattttttattatttgc 54554  T
Q  144 ttgcaatttctt 155  Q
    ||||||||||||    
T  54553 ttgcaatttctt 54542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 117 - 181
Target Start/End: Complemental strand, 54549 - 54485
Alignment:
Q  117 aatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 181  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54549 aatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 54485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 55 - 160
Target Start/End: Original strand, 34457 - 34563
Alignment:
Q  55 ttttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacatttttt-attatttgcttgcaatttc 153  Q
    |||||| ||||||||| ||||||| ||| ||||||  ||||||||| | || |||||| || | |||||||| ||||||| ||||||||||| |||||||    
T  34457 ttttttgcaatttcttatgtaaatccctctgaattctttatataaatctctataaattggacagtttctttagattttttgattatttgcttacaatttc 34556  T
Q  154 ttatgta 160  Q
    |||||||    
T  34557 ttatgta 34563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 55 - 134
Target Start/End: Original strand, 20836 - 20915
Alignment:
Q  55 ttttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacatttttt 134  Q
    |||||| ||||||||| ||||||||||| ||||||||||||||||| | || |||||| || ||||| |||| |||||||    
T  20836 ttttttgcaatttcttatgtaaattcctctgaatttcttatataaagctctataaattggacaatttttttagatttttt 20915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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