View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9737_low_33 (Length: 245)
Name: NF9737_low_33
Description: NF9737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9737_low_33 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 3196340 - 3196113
Alignment:
| Q |
1 |
tttgaaatgggggtaaaatataatacaaacaaggatgtaccttgaataatgttcttttttattgggacattggaaaatgttttggaatcctatcgtgcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
3196340 |
tttgaaatgggggtaaaatataatacaaacaaggatgtaccttgaataatgttcttttttattgggacattggaaaatgttttggaatcctatcatgcaa |
3196241 |
T |
|
| Q |
101 |
gttttgaaaggtttcttatgttggatagaagactttctctactagaagtttttattagaagttagaaccaacattttagcagtgatttgagaatcttgga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
3196240 |
gttttgaaaggtttcttatgttggatagaagactttctctactagaagtttttattagaagttagaaccaacattttagcggtgatttgagaatcttgga |
3196141 |
T |
|
| Q |
201 |
gaaagcatctatgtgctgatctcataaa |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
3196140 |
gaaagcatctatgtgctgatctcataaa |
3196113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 3192106 - 3192050
Alignment:
| Q |
22 |
aatacaaacaaggatgtaccttgaataatgttcttttttattgggacattggaaaat |
78 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
3192106 |
aatacaaataaggatataccttgaataatgttcttttttattgggacattagaaaat |
3192050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 3191934 - 3191887
Alignment:
| Q |
181 |
agtgatttgagaatcttggagaaagcatctatgtgctgatctcataaa |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
3191934 |
agtgatttgagaatcttggagaaagcatctatgtgatgatctcataaa |
3191887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 162
Target Start/End: Complemental strand, 3192012 - 3191935
Alignment:
| Q |
82 |
ttggaatcctatcgtgcaagttttgaaaggtttcttatgttggatagaagactttctctactagaagtttttattagaagt |
162 |
Q |
| |
|
|||||| |||||| ||||||||| | || ||||||| |||||||||||||||| ||||| || ||||||||||||||||| |
|
|
| T |
3192012 |
ttggaaacctatcatgcaagtttggtaa--tttcttacgttggatagaagactt-ctctattaaaagtttttattagaagt |
3191935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University