View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9737_low_34 (Length: 242)
Name: NF9737_low_34
Description: NF9737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9737_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 114 - 227
Target Start/End: Original strand, 42596979 - 42597092
Alignment:
| Q |
114 |
ttcatagattcacttcttcctgattcatttcttctaccattacattaatcttctcaattttgaaacacatattcattcctttcttccactgtttatacaa |
213 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| | |||||||||| |
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| T |
42596979 |
ttcatagattcacttcttcctaattcatttcttctaccattacattaatcttctcaaatttgaaacacatattcatttctttcttctgcggtttatacaa |
42597078 |
T |
|
| Q |
214 |
catcacttcttcct |
227 |
Q |
| |
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|||||||||||||| |
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| T |
42597079 |
catcacttcttcct |
42597092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 42596877 - 42596948
Alignment:
| Q |
1 |
cataaaaaataagaattgattgaatcttcactattcactaaaatctcaaattagttagatcccattattaat |
72 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42596877 |
cataaaaaataagaatcgattgaatcttcactattcactaaaatctcaaattagttagatcccattattaat |
42596948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 116 - 227
Target Start/End: Complemental strand, 38789942 - 38789831
Alignment:
| Q |
116 |
catagattcacttcttcctgattcatttcttctaccattacattaatcttctcaattttgaaacacatattcattcctttcttccactgtttatacaaca |
215 |
Q |
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||||||||||||||||| |||||||||||||||||||||| |||||||||||| | ||||| ||| ||||||||| ||||||||||| |||||||||||| |
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| T |
38789942 |
catagattcacttcttcgtgattcatttcttctaccattaaattaatcttctccaatttgagacatatattcatttctttcttccacagtttatacaaca |
38789843 |
T |
|
| Q |
216 |
tcacttcttcct |
227 |
Q |
| |
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|||||||||||| |
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| T |
38789842 |
tcacttcttcct |
38789831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 36939843 - 36939771
Alignment:
| Q |
1 |
cataaaaaataagaattgattgaatc-ttcactattcactaaaatctcaaattagttagatcccattattaat |
72 |
Q |
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|
|||||||||||||||||||||||||| ||||| ||| ||||||||||||||||| ||| |||||||||||||| |
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| T |
36939843 |
cataaaaaataagaattgattgaatccttcacaattaactaaaatctcaaattacttaaatcccattattaat |
36939771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 38790052 - 38789980
Alignment:
| Q |
1 |
cataaaaaataagaattgattgaatcttcactattcactaaaatctcaa-attagttagatcccattattaat |
72 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||| |||| |
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| T |
38790052 |
cataaaaaataagaattgattgattcttcgttattcactaaaatctcaattttagttagatcccattaataat |
38789980 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 117 - 190
Target Start/End: Original strand, 49140606 - 49140679
Alignment:
| Q |
117 |
atagattcacttcttcctgattcatttcttctaccattacattaatcttctcaattttgaaacacatattcatt |
190 |
Q |
| |
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|||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||| ||||||| ||||||| |
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| T |
49140606 |
atagattcacttcttcctagttcatttcttcctccattacattaatcttctcaaatttaaaacacaaattcatt |
49140679 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 13279664 - 13279714
Alignment:
| Q |
4 |
aaaaaataagaattgattgaatc-ttcactattcactaaaatctcaaatta |
53 |
Q |
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|||||| |||||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
13279664 |
aaaaaacaagaattgattgaatccttcaccattcactaaaatctcaaatta |
13279714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 197
Target Start/End: Original strand, 25532482 - 25532553
Alignment:
| Q |
122 |
ttcacttcttcctgattcatttcttctaccattacattaatcttctcaattttgaaacacatattcattcctttct |
197 |
Q |
| |
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||||||||||||| ||||||| ||| |||||||||||||||||||| ||||||||| ||||||| |||||| |
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| T |
25532482 |
ttcacttcttcctagttcatttattcctccattacattaatcttctca----tgaaacacaaattcatttctttct |
25532553 |
T |
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