View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9737_low_40 (Length: 217)
Name: NF9737_low_40
Description: NF9737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9737_low_40 |
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Alignment Details
Target: chr3 (Bit Score: 164; Significance: 8e-88; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 36075185 - 36075368
Alignment:
| Q |
18 |
cattgcatctaagagaagaatctaaatcttcggtagcatcatctctggtagatgtacttataccaaattttcttttcatatattccaaagcattttttgc |
117 |
Q |
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| T |
36075185 |
cattgcatctaggaggagaatcaaaatcttcggtagcatcatctcttgtagatgtacttataccaaattttcttttcatatattccaaagcattttttgc |
36075284 |
T |
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| Q |
118 |
tgccctattgtgtgcaacttctttcttagagccacacttgccacttccaaccaattcctcacttataagaacttcaactatctc |
201 |
Q |
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| T |
36075285 |
tgccctattgtgtgcaatttctttcttagagccacacttgccacttccaaccaattcctcacttataagaacttcaactatctc |
36075368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 35 - 194
Target Start/End: Original strand, 36146577 - 36146736
Alignment:
| Q |
35 |
gaatctaaatcttcggtagcatcatctctggtagatgtacttataccaaattttcttttcatatattccaaagcattttttgctgccctattgtgtgcaa |
134 |
Q |
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| T |
36146577 |
gaatctaaatcttcggtaacatcttcttttgtagacgtgcttataccaagaattttttccatattttccaaagcattttttgctgccctattgtgtgcaa |
36146676 |
T |
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| Q |
135 |
cttctttcttagagccacacttgccacttccaaccaattcctcacttataagaacttcaa |
194 |
Q |
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| T |
36146677 |
tttctttcttagagccataaacaccacttccaacaaactcctcatttataaggacttcaa |
36146736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 101 - 178
Target Start/End: Original strand, 36156520 - 36156597
Alignment:
| Q |
101 |
tccaaagcattttttgctgccctattgtgtgcaacttctttcttagagccacacttgccacttccaaccaattcctca |
178 |
Q |
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| T |
36156520 |
tccaaagcattttttgcagctctataatgtgcaatgtctttcttagagccataagtgcctcttccaacaaatttctca |
36156597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 36 - 196
Target Start/End: Complemental strand, 26530444 - 26530284
Alignment:
| Q |
36 |
aatctaaatcttcggtagcatcatctctggtagatgtacttataccaaattttcttttcatatattccaaagcattttttgctgccctattgtgtgcaac |
135 |
Q |
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|||||||||||| ||||||| | || ||||||||| |||||||||||| ||| ||||| || |||| |||||||||||||||||||| |||||| |
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| T |
26530444 |
aatctaaatctttggtagcaacttcgttggtagatgcacttataccaaaaaaaatttccatattttgcaaaacattttttgctgccctattgcgtgcaat |
26530345 |
T |
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| Q |
136 |
ttctttcttagagccacacttgccacttccaaccaattcctcacttataagaacttcaact |
196 |
Q |
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|||||||||||| ||| | ||||||||||| || |||||| ||||||| ||||||||| |
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| T |
26530344 |
ttctttcttagaaccataaacaccacttccaacaaactcctcatttataaggacttcaact |
26530284 |
T |
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