View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9737_low_41 (Length: 216)
Name: NF9737_low_41
Description: NF9737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9737_low_41 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 52170805 - 52170592
Alignment:
| Q |
1 |
attgataattaaaggacagttgtcggtctgaacttgttgtactaaatccaattaaataaacacaagacatattttaatgttaaatattgattttttgttt |
100 |
Q |
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| T |
52170805 |
attgataactaaaggacagctgtcggtctggacttgttgtactatatccaattaaataaacacaagacatattttaatgctaaatattgattttttgttt |
52170706 |
T |
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| Q |
101 |
tcgctagatgcatccacttatctgaaacaataccagtagcaaggttgaaaagcaacgttgtttcctgtaacctgcaatcnnnnnnnccccaatatccagt |
200 |
Q |
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| T |
52170705 |
tcgctagatgcatccacttatctgaaacaataccattagcaaggttgaaaagcaacgttgtttcctgcaacctgcaatctttttttcccca--atccaat |
52170608 |
T |
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| Q |
201 |
tatgcaatatcatcac |
216 |
Q |
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|||||||||||||||| |
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| T |
52170607 |
tatgcaatatcatcac |
52170592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 2397629 - 2397416
Alignment:
| Q |
1 |
attgataattaaaggacagttgtcggtctgaacttgttgtactaaatccaattaaataaacacaagacatattttaatgttaaatattgattttttgttt |
100 |
Q |
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|||||||| ||| ||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
2397629 |
attgataaccaaatgacagctgtcggtctggatttgttgtactaaatccaattaaataaacacaagacatattttaatgctaaatattgattttttgttt |
2397530 |
T |
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| Q |
101 |
tcgctagatgcatccacttatctgaaacaataccagtagcaaggttgaaaagcaacgttgtttcctgtaacctgcaatcnnnnnnnccccaatatccagt |
200 |
Q |
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|||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||| |
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| T |
2397529 |
tcgctagatgcacccccttatctgaaacaatatcagtagcaaggttgaaaagcaacgttgtttcctgcaacctgcaatctttttttcccca--atccagt |
2397432 |
T |
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| Q |
201 |
tatgcaatatcatcac |
216 |
Q |
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|||||||||||||||| |
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| T |
2397431 |
tatgcaatatcatcac |
2397416 |
T |
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