View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9737_low_42 (Length: 215)
Name: NF9737_low_42
Description: NF9737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9737_low_42 |
 | |
|
| [»] chr8 (4 HSPs) |
| |
|
| [»] chr2 (4 HSPs) |
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|
| [»] chr1 (2 HSPs) |
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| [»] chr6 (3 HSPs) |
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| [»] scaffold0061 (1 HSPs) |
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| [»] scaffold0017 (1 HSPs) |
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| [»] chr3 (4 HSPs) |
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| [»] scaffold0003 (2 HSPs) |
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| [»] chr5 (3 HSPs) |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 171; Significance: 5e-92; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 30426353 - 30426567
Alignment:
| Q |
1 |
taaaaaccacaagaaataaataaacgttgagacgtctcaagttggttgcaccctaacaaacaacttgcatccgcatctaagagaataccgcgatgcatca |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
30426353 |
taaaaaccacaagaaataaataaatgttgagacgtctcaagttggccgcaccctaacaaacaacccgcatccgcatctaagagaattccgcgatgcatca |
30426452 |
T |
|
| Q |
101 |
agtttgacctggtaggcaaccgatcctttaccaacctccaagcaaaaattgagaacttaagtggagcatgtttatgccaaactagagcatctacaccatc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
30426453 |
ggtttgacctggtaggcaaccgatcctttaccaacctccaagcaaaaattgagaccttaagtggaacatgtttatgccaaactagagcatctgcaccatc |
30426552 |
T |
|
| Q |
201 |
cacctgaggaatgtc |
215 |
Q |
| |
|
||||||| ||||||| |
|
|
| T |
30426553 |
cacctgaagaatgtc |
30426567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 5802342 - 5802127
Alignment:
| Q |
1 |
taaaaaccacaagaaataaataaacgttgagacgtctcaagttggttgcaccctaacaaacaacttgcatccgcatctaagagaataccgcgatgcatca |
100 |
Q |
| |
|
|||||||||||||||||||||||| | ||||| ||||| | |||| ||| |||||||||||||| ||||||| ||||||||| |||||||||||||||| |
|
|
| T |
5802342 |
taaaaaccacaagaaataaataaatgctgagaagtctcgatttggccgcaacctaacaaacaactcgcatccgaatctaagaggataccgcgatgcatca |
5802243 |
T |
|
| Q |
101 |
agttt-gacctggtaggcaaccgatcctttaccaacctccaagcaaaaattgagaacttaagtggagcatgtttatgccaaactagagcatctacaccat |
199 |
Q |
| |
|
|||| ||||| |||||||||| || |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||| | |
|
|
| T |
5802242 |
ggttttgaccttgtaggcaacctattttttaccaacctccaagcaaaaattgagaccttaagtggaacatgtttatgccaaactagagcatctgcacctt |
5802143 |
T |
|
| Q |
200 |
ccacctgaggaatgtc |
215 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
5802142 |
ccacctgaggaatgtc |
5802127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 8 - 211
Target Start/End: Original strand, 35029143 - 35029346
Alignment:
| Q |
8 |
cacaagaaataaataaacgttgagacgtctcaagttggttgcaccctaacaaacaacttgcatccgcatctaagagaataccgcgatgcatcaagtttga |
107 |
Q |
| |
|
|||||||||||||||| ||||||| ||||| | || ||||||||||||||| | ||||||||| || |||| ||||||| || || ||||| |
|
|
| T |
35029143 |
cacaagaaataaataagtgttgagatgtctcgacaaggccgcaccctaacaaacagcccgcatccgcaggcaaaagaacaccgcgacccagcagatttga |
35029242 |
T |
|
| Q |
108 |
cctggtaggcaaccgatcctttaccaacctccaagcaaaaattgagaacttaagtggagcatgtttatgccaaactagagcatctacaccatccacctga |
207 |
Q |
| |
|
||| ||||||||||||| |||||||||||||||||||||||| || | |||||||||| |||||||||||||||| || |||||| |||| ||||||||| |
|
|
| T |
35029243 |
ccttgtaggcaaccgattctttaccaacctccaagcaaaaatagaaaccttaagtggaacatgtttatgccaaaccagggcatctgcaccttccacctga |
35029342 |
T |
|
| Q |
208 |
ggaa |
211 |
Q |
| |
|
|||| |
|
|
| T |
35029343 |
ggaa |
35029346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 52 - 215
Target Start/End: Original strand, 12331821 - 12331984
Alignment:
| Q |
52 |
cctaacaaacaacttgcatccgcatctaagagaataccgcgatgcatcaagtttgacctggtaggcaaccgatcctttaccaacctccaagcaaaaattg |
151 |
Q |
| |
|
||||||||||||| ||| ||| | || |||||||||| || ||||||| ||||| | ||||||| | || |||||||||| |||||||||||||| |
|
|
| T |
12331821 |
cctaacaaacaacccgcacccgaagctgagagaataccacgctgcatcagatttgatcgagtaggcagcttattttttaccaaccaccaagcaaaaattg |
12331920 |
T |
|
| Q |
152 |
agaacttaagtggagcatgtttatgccaaactagagcatctacaccatccacctgaggaatgtc |
215 |
Q |
| |
|
||| |||||||||| ||||||| |||||||| ||||||||| |||| ||||||||||||||||| |
|
|
| T |
12331921 |
agaccttaagtggaacatgtttgtgccaaacaagagcatctgcaccttccacctgaggaatgtc |
12331984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 168; Significance: 3e-90; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 26146135 - 26146343
Alignment:
| Q |
1 |
taaaaaccacaagaaataaataaacgttgagacgtctcaagttggttgcaccctaacaaacaacttgcatccgcatctaagagaataccgcgatgcatca |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
26146135 |
taaaaaccacaagaaataaataaatgttgagacgtctcaagttggccacaccctaacaaacaact------cgcatctaagagaataccgcgatgcatca |
26146228 |
T |
|
| Q |
101 |
agtttgacctggtaggcaaccgatcctttaccaacctccaagcaaaaattgagaacttaagtggagcatgtttatgccaaactagagcatctacaccatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
26146229 |
agtttgacctggtaggcaaccgatcctttaccaacctccaagcaaaaattgagaccttaagtggagcatgtttatgccaaactagagcatctgcaccatc |
26146328 |
T |
|
| Q |
201 |
cacctgaggaatgtc |
215 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
26146329 |
cacctgaggaatgtc |
26146343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 18 - 215
Target Start/End: Original strand, 43310190 - 43310387
Alignment:
| Q |
18 |
aaataaacgttgagacgtctcaagttggttgcaccctaacaaacaacttgcatccgcatctaagagaataccgcgatgcatcaagtttgacctggtaggc |
117 |
Q |
| |
|
||||||| | ||||||||||| | ||| ||| ||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
43310190 |
aaataaatgctgagacgtctcgatatggccgcatcctaacaaacaacccgcatccgaatctaagagaataccgcgatgcatcgggtttgaccttgtaggc |
43310289 |
T |
|
| Q |
118 |
aaccgatcctttaccaacctccaagcaaaaattgagaacttaagtggagcatgtttatgccaaactagagcatctacaccatccacctgaggaatgtc |
215 |
Q |
| |
|
|||| || ||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||||| |||| |||||||||||| |||| |
|
|
| T |
43310290 |
aacctattctttaccaacctccaagtaaaaattgagaccttaagtggaacatgtttatgccaaactagagcatctgcaccttccacctgaggagtgtc |
43310387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 10688477 - 10688689
Alignment:
| Q |
1 |
taaaaaccacaagaaataaataaacgttgagacgtctcaagttggttgcaccctaacaaacaacttgcatccgcatctaagagaataccgcgatgcatca |
100 |
Q |
| |
|
|||||||||||||||||||||||| | ||||| ||||| | |||| ||||||||||||||||| || |||| | ||||||| |||| ||||||||||| |
|
|
| T |
10688477 |
taaaaaccacaagaaataaataaatgctgagaagtctcgatttggccgcaccctaacaaacaacccgcgtccgaagctaagaggatacagcgatgcatca |
10688576 |
T |
|
| Q |
101 |
agtttgacctggtaggcaaccgatcctttaccaacctccaagcaaaaattgagaacttaagtggagcatgtttatgccaaactagagcatctacaccatc |
200 |
Q |
| |
|
||||| | |||||||||| || ||||||||||| ||||||||| ||||||| ||||||| || |||||||||||||||| ||||||||| |||| || |
|
|
| T |
10688577 |
gatttgatcgtgtaggcaacctattctttaccaaccgccaagcaaatattgagaccttaagtagaacatgtttatgccaaacaagagcatctgcaccttc |
10688676 |
T |
|
| Q |
201 |
cacctgaggaatg |
213 |
Q |
| |
|
|||||||||||| |
|
|
| T |
10688677 |
tacctgaggaatg |
10688689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 114 - 207
Target Start/End: Complemental strand, 43724255 - 43724162
Alignment:
| Q |
114 |
aggcaaccgatcctttaccaacctccaagcaaaaattgagaacttaagtggagcatgtttatgccaaactagagcatctacaccatccacctga |
207 |
Q |
| |
|
|||||| |||| ||| | ||||||||||||||||||||||| |||||| ||| |||| || |||||||| | |||| | ||||| ||||||||| |
|
|
| T |
43724255 |
aggcaaacgattcttcatcaacctccaagcaaaaattgagaccttaagcggaacatgattgtgccaaaccaaagcaccaacaccttccacctga |
43724162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 36685758 - 36685971
Alignment:
| Q |
1 |
taaaaaccacaagaaataaataaacgttgagacgtctcaagttggttgcaccctaacaaacaacttgcatccgcatctaagagaataccgcgatgcatca |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
36685758 |
taaaaaccacaagaaataaataaatgttgagacgtctcaagttggccgcaccctaacaaacaactcgcatccgcatctaagagaattccgcgatgcatca |
36685857 |
T |
|
| Q |
101 |
agtttgacctggtaggcaaccgatcctttaccaacctccaagcaaaaattgagaacttaagtggagcatgtttatgccaaactagagcatctacaccatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||| ||||||||||||||| |||||||||| |||||| |
|
|
| T |
36685858 |
ggtttgacctggtaggcaaccgatcctttaccaacatccaagcaaaaattaagaccttaagtggaacatgtttatgccaaattagagcatctgcaccata |
36685957 |
T |
|
| Q |
201 |
cacctgaggaatgtc |
215 |
Q |
| |
|
|| |||||||||||| |
|
|
| T |
36685958 |
ca-ctgaggaatgtc |
36685971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 209
Target Start/End: Original strand, 45270286 - 45270363
Alignment:
| Q |
132 |
caacctccaagcaaaaattgagaacttaagtggagcatgtttatgccaaactagagcatctacaccatccacctgagg |
209 |
Q |
| |
|
|||||||||||||||||| |||| |||||| ||| |||| || |||||||| | |||||| |||||||||||||||| |
|
|
| T |
45270286 |
caacctccaagcaaaaatagagaccttaagcggaacatggttgtgccaaaccaaagcatcagcaccatccacctgagg |
45270363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 127; Significance: 9e-66; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 48117282 - 48117464
Alignment:
| Q |
1 |
taaaaaccacaagaaataaataaacgttgagacgtctcaagttggttgcaccctaacaaacaacttgcatccgcatctaagagaataccgcgatgcatca |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
48117282 |
taaaaaccacaagaaataaataaatgttgagacgtctcaagttggccgcaccctaacaaacaacccgcatccgcatctaagagaataccgcgatgcatca |
48117381 |
T |
|
| Q |
101 |
agtttgacctggtaggcaaccgatcctttaccaacctccaagcaaaaattgagaacttaagtggagcatgtttatgccaaact |
183 |
Q |
| |
|
|| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||| ||| ||||||||||||| |
|
|
| T |
48117382 |
gattggacctggtaggcaaccgatcctttgtcaacctccaagcaaaaattgagaccttaaatggaacatatttatgccaaact |
48117464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 127 - 215
Target Start/End: Complemental strand, 30821837 - 30821749
Alignment:
| Q |
127 |
tttaccaacctccaagcaaaaattgagaacttaagtggagcatgtttatgccaaactagagcatctacaccatccacctgaggaatgtc |
215 |
Q |
| |
|
|||||||||| ||||||||| ||||||| |||||||||| | |||||||||||||| ||||||||| |||| ||||||||||||||||| |
|
|
| T |
30821837 |
tttaccaaccgccaagcaaatattgagaccttaagtggaacctgtttatgccaaacaagagcatctgcaccttccacctgaggaatgtc |
30821749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 122; Significance: 9e-63; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 2 - 215
Target Start/End: Complemental strand, 6995205 - 6994992
Alignment:
| Q |
2 |
aaaaaccacaagaaataaataaacgttgagacgtctcaagttggttgcaccctaacaaacaacttgcatccgcatctaagagaataccgcgatgcatcaa |
101 |
Q |
| |
|
||||| ||||||||||||||||| | ||||| ||||| | | || ||||||||||||||||| |||| ||| ||||||||| |||||||||||||||| |
|
|
| T |
6995205 |
aaaaatcacaagaaataaataaatgctgagaagtctcgattgggccgcaccctaacaaacaacctgcagccgaatctaagaggataccgcgatgcatcag |
6995106 |
T |
|
| Q |
102 |
gtttgacctggtaggcaaccgatcctttaccaacctccaagcaaaaattgagaacttaagtggagcatgtttatgccaaactagagcatctacaccatcc |
201 |
Q |
| |
|
||||||||| |||||||||| ||| |||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||| ||| |
|
|
| T |
6995105 |
gtttgaccttgtaggcaacctatcttttaccaacctctaagcaaaaattgagaccttaagtggaacatgtttatgccaaactagagcatctgcaccttcc |
6995006 |
T |
|
| Q |
202 |
acctgaggaatgtc |
215 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
6995005 |
acttgaggaatgtc |
6994992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 83 - 209
Target Start/End: Original strand, 10362129 - 10362255
Alignment:
| Q |
83 |
gaataccgcgatgcatcaagtttgacctggtaggcaaccgatcctttaccaacctccaagcaaaaattgagaacttaagtggagcatgtttatgccaaac |
182 |
Q |
| |
|
||||||| ||||||| ||||||| ||| ||||||||||| | | || || ||||||||||||||||| | ||||| || |||||||||||||||| |
|
|
| T |
10362129 |
gaataccacgatgcacaaagtttgtccttgtaggcaaccggttccgtaacagtctccaagcaaaaattgaaactttaagcagaacatgtttatgccaaac |
10362228 |
T |
|
| Q |
183 |
tagagcatctacaccatccacctgagg |
209 |
Q |
| |
|
|||||| ||| ||| |||||||||||| |
|
|
| T |
10362229 |
tagagcctctgcacgatccacctgagg |
10362255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 209
Target Start/End: Original strand, 34434309 - 34434386
Alignment:
| Q |
132 |
caacctccaagcaaaaattgagaacttaagtggagcatgtttatgccaaactagagcatctacaccatccacctgagg |
209 |
Q |
| |
|
|||||||||||||||||| |||| ||||| ||| |||| ||||||||||| | |||||| |||||||||||||||| |
|
|
| T |
34434309 |
caacctccaagcaaaaatagagactttaagcggaacatggttatgccaaaccaaagcatcagcaccatccacctgagg |
34434386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 107; Significance: 8e-54; HSPs: 1)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 64865 - 64651
Alignment:
| Q |
1 |
taaaaaccacaagaaataaataaacgttgagacgtctcaagttggttgcaccctaacaaacaacttgcatccgcatctaagagaataccgcgatgcatca |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||| | ||| ||| |||||||||||||| ||||||| ||| ||||||| | ||||| |||||| |
|
|
| T |
64865 |
taaaaaccacaagaaataaataaatgttgagatgtctcgacgtggccgcatcctaacaaacaactcgcatccgaatccaagagaacatcgcgacgcatca |
64766 |
T |
|
| Q |
101 |
agtttgacctggtaggcaaccgatcctttaccaacctccaagcaaaaattgagaacttaagtggagcatgtttatgccaaactagagcatctacaccatc |
200 |
Q |
| |
|
|||||||| |||||||||| || |||||||||||||||| | |||||||||| |||||||||| ||||||||||||||||||| |||||| |||| || |
|
|
| T |
64765 |
gatttgaccttgtaggcaacctattctttaccaacctccaaacgaaaattgagaccttaagtggaacatgtttatgccaaactagggcatctgcaccttc |
64666 |
T |
|
| Q |
201 |
cacctgaggaatgtc |
215 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
64665 |
cacctgaggagtgtc |
64651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 107; Significance: 8e-54; HSPs: 1)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 133767 - 133981
Alignment:
| Q |
1 |
taaaaaccacaagaaataaataaacgttgagacgtctcaagttggttgcaccctaacaaacaacttgcatccgcatctaagagaataccgcgatgcatca |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||| | ||| ||| |||||||||||||| ||||||| ||| ||||||| | ||||| |||||| |
|
|
| T |
133767 |
taaaaaccacaagaaataaataaatgttgagatgtctcgacgtggccgcatcctaacaaacaactcgcatccgaatccaagagaacatcgcgacgcatca |
133866 |
T |
|
| Q |
101 |
agtttgacctggtaggcaaccgatcctttaccaacctccaagcaaaaattgagaacttaagtggagcatgtttatgccaaactagagcatctacaccatc |
200 |
Q |
| |
|
|||||||| |||||||||| || |||||||||||||||| | |||||||||| |||||||||| ||||||||||||||||||| |||||| |||| || |
|
|
| T |
133867 |
gatttgaccttgtaggcaacctattctttaccaacctccaaacgaaaattgagaccttaagtggaacatgtttatgccaaactagggcatctgcaccttc |
133966 |
T |
|
| Q |
201 |
cacctgaggaatgtc |
215 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
133967 |
cacctgaggagtgtc |
133981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 107; Significance: 8e-54; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 19548710 - 19548496
Alignment:
| Q |
1 |
taaaaaccacaagaaataaataaacgttgagacgtctcaagttggttgcaccctaacaaacaacttgcatccgcatctaagagaataccgcgatgcatca |
100 |
Q |
| |
|
|||||||||||||||||||||||| | ||||| ||||| | |||| ||||||||||||||||| | ||||| ||||||||| |||||||||||| | |
|
|
| T |
19548710 |
taaaaaccacaagaaataaataaatgctgagaagtctcgaattggccgcaccctaacaaacaacccgaatccgaatctaagaggataccgcgatgcgaaa |
19548611 |
T |
|
| Q |
101 |
agtttgacctggtaggcaaccgatcctttaccaacctccaagcaaaaattgagaacttaagtggagcatgtttatgccaaactagagcatctacaccatc |
200 |
Q |
| |
|
||||||||| |||||||||| || ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||| || |
|
|
| T |
19548610 |
ggtttgaccttgtaggcaacctatttattaccaacctccaagcaaaaattgagaccttaagtggaacatgtttatgccaaactagagcatctgcaccttc |
19548511 |
T |
|
| Q |
201 |
cacctgaggaatgtc |
215 |
Q |
| |
|
|||| ||| |||||| |
|
|
| T |
19548510 |
cacccgagaaatgtc |
19548496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 8 - 215
Target Start/End: Complemental strand, 52251343 - 52251136
Alignment:
| Q |
8 |
cacaagaaataaataaacgttgagacgtctcaagttggttgcaccctaacaaacaacttgcatccgcatctaagagaataccgcgatgcatcaagtttga |
107 |
Q |
| |
|
|||||||||||||||| | ||||| ||||| | ||| ||||||||||||||| |||||| ||| | || |||| ||||||| ||| || ||||| |
|
|
| T |
52251343 |
cacaagaaataaataagtgctgagatgtctcgacgtggccgcaccctaacaaacagtctgcatctgcaaccaaaagaacaccgcgacgcagcagatttga |
52251244 |
T |
|
| Q |
108 |
cctggtaggcaaccgatcctttaccaacctccaagcaaaaattgagaacttaagtggagcatgtttatgccaaactagagcatctacaccatccacctga |
207 |
Q |
| |
|
||| ||||||||||||| |||||||||||||||||||||||| || | |||||||||| |||||||||||||||| || |||||| |||| ||||||||| |
|
|
| T |
52251243 |
ccttgtaggcaaccgattctttaccaacctccaagcaaaaatggaaaccttaagtggaacatgtttatgccaaaccagggcatctgcaccttccacctga |
52251144 |
T |
|
| Q |
208 |
ggaatgtc |
215 |
Q |
| |
|
|||||||| |
|
|
| T |
52251143 |
ggaatgtc |
52251136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 127 - 215
Target Start/End: Original strand, 17700276 - 17700364
Alignment:
| Q |
127 |
tttaccaacctccaagcaaaaattgagaacttaagtggagcatgtttatgccaaactagagcatctacaccatccacctgaggaatgtc |
215 |
Q |
| |
|
|||||||||| ||||||||| ||||||| |||||||||| | |||||||||||||| ||||||||| |||| ||||||||||||||||| |
|
|
| T |
17700276 |
tttaccaaccgccaagcaaatattgagaccttaagtggaacctgtttatgccaaacaagagcatctgcaccttccacctgaggaatgtc |
17700364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 209
Target Start/End: Original strand, 48929772 - 48929849
Alignment:
| Q |
132 |
caacctccaagcaaaaattgagaacttaagtggagcatgtttatgccaaactagagcatctacaccatccacctgagg |
209 |
Q |
| |
|
|||||||||||||||||| ||| |||||| ||| |||| | |||||||| | |||||| |||||||||||||||| |
|
|
| T |
48929772 |
caacctccaagcaaaaataaagaccttaagcggaacatgaatgtgccaaaccaaagcatcagcaccatccacctgagg |
48929849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 94; Significance: 5e-46; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 25019542 - 25019329
Alignment:
| Q |
1 |
taaaaaccacaagaaataaataaacgttgagacgtctcaagttggttgcaccctaacaaacaacttgcatccgcatctaagagaataccgcgatgcatca |
100 |
Q |
| |
|
|||||||||||||||||||||||| | ||||| ||||| | |||| ||||||||||||||||| || | || | ||||||| |||||||||||||||| |
|
|
| T |
25019542 |
taaaaaccacaagaaataaataaatgctgagaagtctcgatttggccgcaccctaacaaacaacccgcgttcgaagctaagaggataccgcgatgcatca |
25019443 |
T |
|
| Q |
101 |
agtttgacctggtaggcaaccgatcctttaccaacctccaagcaaaaattgagaacttaagtggagcatgtttatgccaaactagagcatctacaccatc |
200 |
Q |
| |
|
||||| | |||||||||| || |||||||||| |||||||| ||||||| |||||||||| |||||||||||||||| ||||||||| |||| || |
|
|
| T |
25019442 |
gatttgatcgtgtaggcaaccaattttttaccaaccgtcaagcaaatattgagaccttaagtggaacatgtttatgccaaacaagagcatctgcaccttc |
25019343 |
T |
|
| Q |
201 |
cacctgaggaatgt |
214 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
25019342 |
cacctgaggaatgt |
25019329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 30573568 - 30573354
Alignment:
| Q |
1 |
taaaaaccacaagaaataaataaacgttgagacgtctcaagttggttgcaccctaacaaacaacttgcatccgcatctaagagaataccgcgatgcatca |
100 |
Q |
| |
|
||||||| ||| |||||||||||| | ||||| ||||| | |||| |||||||| |||||||| ||| |||| | || |||| |||||||| ||||||| |
|
|
| T |
30573568 |
taaaaactacacgaaataaataaatgctgagaagtctcgatttggccgcaccctagcaaacaacctgcgtccgaagctgagaggataccgcgctgcatca |
30573469 |
T |
|
| Q |
101 |
agtttgacctggtaggcaaccgatcctttaccaacctccaagcaaaaattgagaacttaagtggagcatgtttatgccaaactagagcatctacaccatc |
200 |
Q |
| |
|
||||| | | || |||| || |||||||||| |||| |||| ||||||| |||||| ||| |||||||||||||||| ||||||||| |||| || |
|
|
| T |
30573468 |
gatttgatcgtgcagacaacttattttttaccaaccgccaaacaaatattgagaccttaaggggaacatgtttatgccaaacaagagcatctgcaccttc |
30573369 |
T |
|
| Q |
201 |
cacctgaggaatgtc |
215 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
30573368 |
cacctgaggaatgtc |
30573354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 54 - 215
Target Start/End: Complemental strand, 41805930 - 41805769
Alignment:
| Q |
54 |
taacaaacaacttgcatccgcatctaagagaataccgcgatgcatcaagtttgacctggtaggcaaccgatcctttaccaacctccaagcaaaaattgag |
153 |
Q |
| |
|
||||||||||| ||||||| | || |||||||||| || ||||||| ||||| | ||||||||| || |||||||||| ||||||||| |||||| |
|
|
| T |
41805930 |
taacaaacaacccgcatccgaagctgagagaataccacgctgcatcagatttgatcgtgtaggcaacttattttttaccaaccgccaagcaaatattgag |
41805831 |
T |
|
| Q |
154 |
aacttaagtggagcatgtttatgccaaactagagcatctacaccatccacctgaggaatgtc |
215 |
Q |
| |
|
| ||| |||||| ||| |||||||||||| ||||||| | |||| ||||||||||||||||| |
|
|
| T |
41805830 |
accttgagtggaacatatttatgccaaacaagagcatatgcaccttccacctgaggaatgtc |
41805769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 366919 - 367133
Alignment:
| Q |
1 |
taaaaaccacaagaaataaataaacgttgagacgtctcaagttggttgcaccctaacaaacaacttgcatccgcatctaagagaataccgcgatgcatca |
100 |
Q |
| |
|
||||||| |||||||||||||||| | ||||| ||||| | ||| |||||||| ||||||||| ||||| | | || |||||||||| || ||||||| |
|
|
| T |
366919 |
taaaaactacaagaaataaataaatgctgagaagtctcgatttgtctgcaccctgacaaacaacccgcatctgaagctgagagaataccacgttgcatca |
367018 |
T |
|
| Q |
101 |
agtttgacctggtaggcaaccgatcctttaccaacctccaagcaaaaattgagaacttaagtggagcatgtttatgccaaactagagcatctacaccatc |
200 |
Q |
| |
|
||||| | ||||||||| || |||||||| | ||||||||| ||||||| ||||||||| |||||||||||||||| ||||||||| |||| || |
|
|
| T |
367019 |
gatttgatcgtgtaggcaacttattttttaccaatcgccaagcaaatattgagaccttaagtgggacatgtttatgccaaacaagagcatctgcaccttc |
367118 |
T |
|
| Q |
201 |
cacctgaggaatgtc |
215 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
367119 |
cacctgaggaatgtc |
367133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 366812 - 366875
Alignment:
| Q |
1 |
taaaaaccacaagaaataaataaacgttgagacgtctcaagttggttgcaccctaacaaacaac |
64 |
Q |
| |
|
||||||| |||||||||||||||| | ||||| ||||| | ||| |||||||||||||||||| |
|
|
| T |
366812 |
taaaaactacaagaaataaataaatgctgagaagtctcgatttgtctgcaccctaacaaacaac |
366875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 2e-32; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 9724907 - 9724693
Alignment:
| Q |
1 |
taaaaaccacaagaaataaataaacgttgagacgtctcaagttggttgcaccctaacaaacaacttgcatccgcatctaagagaataccgcgatgcatca |
100 |
Q |
| |
|
||||||| |||||| |||||||| ||||||| ||||| | ||| ||| ||||||||||||| ||||||| | || |||||||||| | ||||||| |
|
|
| T |
9724907 |
taaaaactacaagaggtaaataaatgttgagaagtctcgatgtggccgcatcctaacaaacaacccgcatccgaagctgagagaataccacactgcatca |
9724808 |
T |
|
| Q |
101 |
agtttgacctggtaggcaaccgatcctttaccaacctccaagcaaaaattgagaacttaagtggagcatgtttatgccaaactagagcatctacaccatc |
200 |
Q |
| |
|
||||| | ||||||| | || |||||||||| ||||||||||||||||| |||||||||| |||||||||||||||| ||||||||| |||| || |
|
|
| T |
9724807 |
gatttgatcgagtaggcagcttattttttaccaaccgccaagcaaaaattgagaccttaagtggaacatgtttatgccaaacaagagcatctgcaccttc |
9724708 |
T |
|
| Q |
201 |
cacctgaggaatgtc |
215 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
9724707 |
cacccgaggaatgtc |
9724693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 112 - 209
Target Start/End: Original strand, 21077149 - 21077246
Alignment:
| Q |
112 |
gtaggcaaccgatcctttaccaacctccaagcaaaaattgagaacttaagtggagcatgtttatgccaaactagagcatctacaccatccacctgagg |
209 |
Q |
| |
|
||||||||||||| | || ||||||||| ||||||||||||| || |||| | |||||||||||||||||||||| | | |||| ||||||||||| |
|
|
| T |
21077149 |
gtaggcaaccgattttgtaacaacctccatgcaaaaattgagactttgagtgaaacatgtttatgccaaactagagcctttgcaccttccacctgagg |
21077246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 209
Target Start/End: Original strand, 25671997 - 25672074
Alignment:
| Q |
132 |
caacctccaagcaaaaattgagaacttaagtggagcatgtttatgccaaactagagcatctacaccatccacctgagg |
209 |
Q |
| |
|
|||||||||||||||||| |||| |||||| | | |||| || |||||||| | |||||| |||||||||||||||| |
|
|
| T |
25671997 |
caacctccaagcaaaaatagagaccttaagcgtaacatggttgtgccaaaccaaagcatcagcaccatccacctgagg |
25672074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 27834 - 27910
Alignment:
| Q |
139 |
caagcaaaaattgagaacttaagtggagcatgtttatgccaaactagagcatctacaccatccacctgaggaatgtc |
215 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
27834 |
caagcaaaaattgagaccttaagtggagcatgtttatgccaaactagagcatctgcaccatccacctgaggaatgtc |
27910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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