View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9737_low_5 (Length: 518)
Name: NF9737_low_5
Description: NF9737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9737_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 18 - 500
Target Start/End: Original strand, 54472236 - 54472731
Alignment:
| Q |
18 |
acaagaaggaagaagagatcacaacctcatcacattcattactaccctactccagcacacggtatatatttttatatatctcctatttcnnnnnnnaata |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
54472236 |
acaagaaggaagaagagatcacaacctcatcacattcattactaccctactccagcacacggtatatatttttatatatctcctatttctttttttaata |
54472335 |
T |
|
| Q |
118 |
ggaatttgcaaataagcatgttatgaagtttagaatagttaatggaggaag------------ttaattaattaatgattcatagcctattcttannnnn |
205 |
Q |
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| T |
54472336 |
ggaatttgcaaataagcatgttatgaagtttagaatagttaatgggggaagctaattaattaattaattaattaatgattcatagcctattcttattttt |
54472435 |
T |
|
| Q |
206 |
nngatcagaaatggatcctctaaagcttttgcatggtgccatagtcgacgcggtagaggatccaaatttgaatcttatgtagctacaatatggtgttgca |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54472436 |
ttgatcagaaatggatcctctaaagcttttgcatggtgccatagtcgacgcggtagaggatccaaatttgaatcttatgtagctacaatatggtgttgca |
54472535 |
T |
|
| Q |
306 |
aatgtagaaaccgttagatatnnnnnnnnnn-gttatctttgaatttatcaatccctggtcataaaggatctaatttgttcaaatcatttgttaaaaggc |
404 |
Q |
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||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54472536 |
aatgtagaaactgtaagatataaaaaaaaaatgttatctttgaatttatcaatccctggtcataaaggatctaatttgttcaaatcatttgttaaaaggc |
54472635 |
T |
|
| Q |
405 |
tagttgtatatgttgagtatgtcttataatgctaataagtgggagagtcaattaagcgaagcgagagtgacatgcctttttgaaccaacacagtta |
500 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54472636 |
tagttgtatatgttgagtatgtgttataatgctaataagtgggagagtcaattaagcgaagcgagagtgacatgcctttttgaaccaacacagtta |
54472731 |
T |
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