View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9737_low_6 (Length: 465)
Name: NF9737_low_6
Description: NF9737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9737_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 18 - 461
Target Start/End: Original strand, 42524067 - 42524510
Alignment:
| Q |
18 |
gaacaagatcgatggtcagagttgatgagatgcggtggaggacagtggatgagctgttccgcatgagtgccgcattggcagacacctaaatgctcaagtt |
117 |
Q |
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| T |
42524067 |
gaacaagatcgatggtcagagttgatgagatgcggtggaggacagtggatgagctcttccgcatgggtaccgcattggcagacacctaaatgctcaagtc |
42524166 |
T |
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| Q |
118 |
agtttttgagtgagatgggtgagaagtttaatacgatagaaattgtaactttctcctgttgaagttttaggataattaatgtagggtaaatttcgttgaa |
217 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |
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| T |
42524167 |
agtttttgagtgagatgagtgagaagtttaatacgatagaaattgtaactttctcctgttgaagttttaggataattaatgtagcgtaaatttcgtagag |
42524266 |
T |
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| Q |
218 |
accattgagagatcagcgtgatttacggataagtgcttggtcatacattgattggttgataccgtagagtgtgttggcaatgcaacttaatgtgtggctc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
42524267 |
accattgagagatcagcgtgatttacggataagtgcctggtcagacattgattggttgataccctagagtgtgttggcaatgcaacttaatgtgtggctc |
42524366 |
T |
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| Q |
318 |
tatagtagagtccgcgcgctaaggattgaacatggtacagtccggaataataatcattaatctgtagactatgtatagtctacaaccgtaaaaattatgt |
417 |
Q |
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|||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||| |
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| T |
42524367 |
tatagtagagtccgtgcgctaaggattgaacatggtccagtccggaacaataatcatcaatctgtagactatgtatagtctactaccgtaaaaattatgt |
42524466 |
T |
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| Q |
418 |
tcgaaatttgaacatcaaattcatccattaaccaactccaaact |
461 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
42524467 |
tcgaaatttgaacatcaaattcatccattaaccaagtccaaact |
42524510 |
T |
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