View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9738_high_6 (Length: 302)
Name: NF9738_high_6
Description: NF9738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9738_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 17 - 166
Target Start/End: Original strand, 39107451 - 39107600
Alignment:
| Q |
17 |
catgtattggcttccatatgtgacaccctttttccatccattccattaaacaaagaagtctctcaagatgaaaacctctcatccttctattcaacttctg |
116 |
Q |
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| T |
39107451 |
catgtattggcttccatatgtgacaccctttttccatccattccattaaacaaagaagtctctcaagatgaaaacctctcatccttctattcaacttctg |
39107550 |
T |
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| Q |
117 |
gttctcagttcccatttcctgatgaggttctttttccaccaaatttatcc |
166 |
Q |
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| T |
39107551 |
gttctcagttcccatttcctgatgaggttctttttccaccaaatttatcc |
39107600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 194 - 292
Target Start/End: Original strand, 39107639 - 39107733
Alignment:
| Q |
194 |
atctatctatcatacaagtgataatattcaatacaaattttacacttacctgtagaatccaccgttagtttctaacgggtattcaacacgtgtcctatg |
292 |
Q |
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| T |
39107639 |
atctatctatcatataagtgataatattcaatacaaattttacacttacctgtagaatccacc----gtttctaacgggtattcaacacgtgtcctatg |
39107733 |
T |
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