View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9738_high_8 (Length: 256)
Name: NF9738_high_8
Description: NF9738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9738_high_8 |
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| [»] chr8 (8 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 19 - 256
Target Start/End: Original strand, 3067543 - 3067780
Alignment:
| Q |
19 |
acagatcctttgtttcacttagttcatcttctgcatatccatgtatgaggtctggcttgcagctaccaaatggatcgtcaggatccaccagtgagtaact |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3067543 |
acagatcctttgtttcacttagttcatcttctgcatatccatgtatgaggtctggcttgcagctaccaaatggatcgtcaggatccaccagtgagtaact |
3067642 |
T |
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| Q |
119 |
ttttcgacaccgacatgttggcctcttattctctcccaaagtgcagtagctattatatccacaaacaccactacctaatttaggaaaataatgacatata |
218 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3067643 |
ttttcgacaccgacgtgttggcctcttattctctcccaaagtgcagtagctattatatccacaaacaccactacctaatttaggaaaataatgacatata |
3067742 |
T |
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| Q |
219 |
ttttcaggctgagaccacactatagtccaacctccact |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
3067743 |
ttttcaggctgagaccacactatagtccaacctccact |
3067780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 21 - 248
Target Start/End: Original strand, 3071184 - 3071411
Alignment:
| Q |
21 |
agatcctttgtttcacttagttcatcttctgcatatccatgtatgaggtctggcttgcagctaccaaatggatcgtcaggatccaccagtgagtaacttt |
120 |
Q |
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||||||||||||| |||| |||||||||||||| |||| ||||||| |||||||||||||||||| |||||| |||||||| | ||||||||||| || |
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| T |
3071184 |
agatcctttgttttactttgttcatcttctgcacatccttgtatgaaatctggcttgcagctaccatgtggatcatcaggatcaagcagtgagtaacgtt |
3071283 |
T |
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| Q |
121 |
ttcgacaccgacatgttggcctcttattctctcccaaagtgcagtagctattatatccacaaacaccactacctaatttaggaaaataatgacatatatt |
220 |
Q |
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| T |
3071284 |
ttggacaccgacatgttggtctcttatcatctcccaaagtgcagatggtattatatccacaaacaccactacctgaactaacaatatattgacatatatt |
3071383 |
T |
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| Q |
221 |
ttcaggctgagaccacactatagtccaa |
248 |
Q |
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|| ||| |||||||||||| |||||||| |
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| T |
3071384 |
tttaggatgagaccacactgtagtccaa |
3071411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 35 - 248
Target Start/End: Complemental strand, 3055768 - 3055555
Alignment:
| Q |
35 |
acttagttcatcttctgcatatccatgtatgaggtctggcttgcagctaccaaatggatcgtcaggatccaccagtgagtaactttttcgacaccgacat |
134 |
Q |
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||||||||||||||||||| |||| ||||||| |||||||||||||||||||| |||||| |||||||| ||||||||||| | |||| ||||| ||||| |
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| T |
3055768 |
acttagttcatcttctgcacatccttgtatgaagtctggcttgcagctaccaagtggatcatcaggatcaaccagtgagtatcgttttggacactgacat |
3055669 |
T |
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| Q |
135 |
gttggcctcttattctctcccaaagtgcagtagctattatatccacaaacaccactacctaatttaggaaaataatgacatatattttcaggctgagacc |
234 |
Q |
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||||| ||||||| |||||||||||||| ||||||||||||||||||||||||| ||| |||| || ||||| ||||||||| ||||| | ||||| |
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| T |
3055668 |
gttggtctcttatcaactcccaaagtgcagaagctattatatccacaaacaccactcccttcattagcaatataattacatatattatcaggtttagacc |
3055569 |
T |
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| Q |
235 |
acactatagtccaa |
248 |
Q |
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||||||| |||||| |
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| T |
3055568 |
acactatggtccaa |
3055555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 21 - 248
Target Start/End: Complemental strand, 3040773 - 3040546
Alignment:
| Q |
21 |
agatcctttgtttcacttagttcatcttctgcatatccatgtatgaggtctggcttgcagctaccaaatggatcgtcaggatccaccagtgagtaacttt |
120 |
Q |
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||||||||||||| || |||||||||||||||| |||| |||| || |||||||||||||||||| | |||| ||||||||| || ||||||||||| | |
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| T |
3040773 |
agatcctttgttttacatagttcatcttctgcacatccttgtacgaaatctggcttgcagctaccataaggatagtcaggatcaactagtgagtaactat |
3040674 |
T |
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| Q |
121 |
ttcgacaccgacatgttggcctcttattctctcccaaagtgcagtagctattatatccacaaacaccactacctaatttaggaaaataatgacatatatt |
220 |
Q |
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| T |
3040673 |
ctggacaccgaaatgctggtctcgtatcatctcccaaagtgcatatgctattatatccacaaacaccactaccttcagtaacaaaataatgacatatatt |
3040574 |
T |
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| Q |
221 |
ttcaggctgagaccacactatagtccaa |
248 |
Q |
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| ||| |||||||||||| |||||||| |
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| T |
3040573 |
tcgaggatgagaccacactgtagtccaa |
3040546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 35 - 251
Target Start/End: Complemental strand, 3034906 - 3034690
Alignment:
| Q |
35 |
acttagttcatcttctgcatatccatgtatgaggtctggcttgcagctaccaaatggatcgtcaggatccaccagtgagtaactttttcgacaccgacat |
134 |
Q |
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|||| |||||||||||||| |||| ||||||| ||||||||||||||||||||||||||| |||||||| ||||| ||||| | |||| ||||| ||||| |
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| T |
3034906 |
acttggttcatcttctgcacatccttgtatgaagtctggcttgcagctaccaaatggatcttcaggatcaaccagcgagtatcgttttggacactgacat |
3034807 |
T |
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| Q |
135 |
gttggcctcttattctctcccaaagtgcagtagctattatatccacaaacaccactacctaatttaggaaaataatgacatatattttcaggctgagacc |
234 |
Q |
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| || ||||||| || |||||||||| ||||||||||||||||||||||||||||| || || |||| ||||||||| ||||||| ||||| |
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| T |
3034806 |
ttcggtctcttatcaacttccaaagtgcataagctattatatccacaaacaccactacctgcactaacaatataagtacatatattatcaggcttagacc |
3034707 |
T |
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| Q |
235 |
acactatagtccaacct |
251 |
Q |
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||||| | ||||||||| |
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| T |
3034706 |
acactgtggtccaacct |
3034690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 35 - 194
Target Start/End: Complemental strand, 3042948 - 3042789
Alignment:
| Q |
35 |
acttagttcatcttctgcatatccatgtatgaggtctggcttgcagctaccaaatggatcgtcaggatccaccagtgagtaactttttcgacaccgacat |
134 |
Q |
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||||||||||||||||||| |||| || |||| || ||||| ||| |||||| |||||| || | ||| |||||||||||||||||| ||||| ||||| |
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| T |
3042948 |
acttagttcatcttctgcacatccttgcatgaagtttggctcgcaagtaccaagtggatcatcggcatcaaccagtgagtaactttttggacactgacat |
3042849 |
T |
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| Q |
135 |
gttggcctcttattctctcccaaagtgcagtagctattatatccacaaacaccactacct |
194 |
Q |
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||||| | ||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
3042848 |
gttggtcacttatcaactcccaaagtgcagaagctattatatccacaaacaccactacct |
3042789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 69 - 194
Target Start/End: Original strand, 3063557 - 3063682
Alignment:
| Q |
69 |
tctggcttgcagctaccaaatggatcgtcaggatccaccagtgagtaactttttcgacaccgacatgttggcctcttattctctcccaaagtgcagtagc |
168 |
Q |
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|||||||||||||| ||| ||||||| | |||||| | ||||||||| |||| ||||| ||||| |||| ||||||| ||||||||||||||| ||| |
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| T |
3063557 |
tctggcttgcagctgccatatggatcattaggatcaatcagtgagtactgttttggacactgacattttggtctcttatcatctcccaaagtgcagaagc |
3063656 |
T |
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| Q |
169 |
tattatatccacaaacaccactacct |
194 |
Q |
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|||||||||||||||||||||||||| |
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| T |
3063657 |
tattatatccacaaacaccactacct |
3063682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 35 - 175
Target Start/End: Original strand, 25125326 - 25125466
Alignment:
| Q |
35 |
acttagttcatcttctgcatatccatgtatgaggtctggcttgcagctaccaaatggatcgtcaggatccaccagtgagtaactttttcgacaccgacat |
134 |
Q |
| |
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|||||||||||||||| || |||| || |||| |||| ||| ||| |||||| |||||| || ||||| |||||||||||||||||| ||||| ||||| |
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| T |
25125326 |
acttagttcatcttctccacatccttgcatgaagtcttgctcgcaagtaccaagtggatcatcgggatcaaccagtgagtaactttttggacactgacat |
25125425 |
T |
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| Q |
135 |
gttggcctcttattctctcccaaagtgcagtagctattata |
175 |
Q |
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||||| ||||||| |||||||||||||| |||||||||| |
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| T |
25125426 |
gttggtctcttatcaactcccaaagtgcagaagctattata |
25125466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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