View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9738_low_1 (Length: 836)

Name: NF9738_low_1
Description: NF9738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9738_low_1
NF9738_low_1
[»] chr5 (15 HSPs)
chr5 (20-365)||(24136981-24137335)
chr5 (273-551)||(24136746-24137012)
chr5 (324-452)||(24136986-24137114)
chr5 (622-713)||(24136584-24136675)
chr5 (356-487)||(24136889-24137021)
chr5 (89-181)||(9512024-9512116)
chr5 (325-393)||(9511777-9511845)
chr5 (304-369)||(11335370-11335437)
chr5 (304-390)||(9511811-9511899)
chr5 (184-272)||(11335335-11335423)
chr5 (116-177)||(11335330-11335391)
chr5 (116-171)||(9511926-9511981)
chr5 (397-461)||(11335371-11335437)
chr5 (655-712)||(11335661-11335716)
chr5 (396-487)||(24137044-24137136)
[»] chr8 (6 HSPs)
chr8 (266-551)||(20241903-20242183)
chr8 (295-551)||(20250913-20251164)
chr8 (295-487)||(20242054-20242247)
chr8 (273-395)||(20250983-20251105)
chr8 (116-181)||(20242326-20242391)
chr8 (116-181)||(20250769-20250834)
[»] chr7 (18 HSPs)
chr7 (266-551)||(44338226-44338506)
chr7 (295-487)||(44338377-44338570)
chr7 (266-487)||(15623046-15623269)
chr7 (396-551)||(46963798-46963953)
chr7 (239-428)||(15623104-15623303)
chr7 (317-487)||(15623006-15623176)
chr7 (20-181)||(46963441-46963600)
chr7 (84-181)||(21813955-21814053)
chr7 (239-338)||(15623197-15623306)
chr7 (325-388)||(21813824-21813887)
chr7 (320-395)||(46963815-46963889)
chr7 (320-396)||(11828573-11828649)
chr7 (112-168)||(46963681-46963737)
chr7 (116-181)||(44338649-44338714)
chr7 (325-369)||(11828609-11828653)
chr7 (328-368)||(24487088-24487128)
chr7 (305-393)||(21813850-21813940)
chr7 (127-169)||(24486942-24486984)
[»] chr6 (19 HSPs)
chr6 (239-551)||(21861990-21862311)
chr6 (276-520)||(13167359-13167604)
chr6 (273-487)||(21862142-21862363)
chr6 (266-383)||(28063583-28063699)
chr6 (21-229)||(9291018-9291228)
chr6 (294-452)||(28063518-28063677)
chr6 (357-487)||(21862239-21862371)
chr6 (112-181)||(22860908-22860976)
chr6 (622-712)||(21861793-21861884)
chr6 (116-181)||(22860941-22861007)
chr6 (85-137)||(28063456-28063508)
chr6 (149-234)||(22860917-22861008)
chr6 (622-710)||(10741328-10741417)
chr6 (112-181)||(22860797-22860869)
chr6 (322-362)||(10741529-10741569)
chr6 (325-392)||(13097903-13097970)
chr6 (622-708)||(13167182-13167269)
chr6 (116-181)||(22860762-22860829)
chr6 (332-369)||(13097895-13097932)
[»] chr1 (9 HSPs)
chr1 (20-388)||(15629728-15630107)
chr1 (305-480)||(15629931-15630107)
chr1 (330-396)||(19825091-19825157)
chr1 (396-463)||(15629930-15629997)
chr1 (325-369)||(19825117-19825161)
chr1 (116-233)||(3775072-3775188)
chr1 (116-179)||(12177164-12177227)
chr1 (322-396)||(2072366-2072440)
chr1 (322-396)||(2075896-2075970)
[»] chr4 (17 HSPs)
chr4 (320-551)||(16870588-16870820)
chr4 (20-149)||(16871262-16871385)
chr4 (112-395)||(16870652-16870955)
chr4 (356-426)||(54147835-54147905)
chr4 (622-712)||(16870242-16870332)
chr4 (273-357)||(54147811-54147896)
chr4 (305-389)||(54147717-54147802)
chr4 (356-480)||(54147718-54147843)
chr4 (305-361)||(54147869-54147926)
chr4 (85-137)||(54147912-54147964)
chr4 (326-393)||(42265426-42265492)
chr4 (120-181)||(24225681-24225742)
chr4 (396-452)||(54147870-54147927)
chr4 (116-181)||(16871105-16871172)
chr4 (112-181)||(16871033-16871105)
chr4 (325-369)||(24225502-24225546)
chr4 (97-181)||(24225647-24225735)
[»] chr2 (20 HSPs)
chr2 (220-461)||(1173283-1173535)
chr2 (404-551)||(8986150-8986298)
chr2 (305-487)||(1173283-1173467)
chr2 (20-181)||(8986502-8986661)
chr2 (99-212)||(32290742-32290863)
chr2 (40-175)||(1173133-1173268)
chr2 (116-181)||(38583967-38584033)
chr2 (441-551)||(38584195-38584301)
chr2 (321-395)||(8986214-8986287)
chr2 (112-205)||(38583998-38584102)
chr2 (112-168)||(8986368-8986424)
chr2 (116-212)||(38583934-38584035)
chr2 (325-369)||(38584202-38584246)
chr2 (333-395)||(1173560-1173622)
chr2 (116-181)||(32290709-32290775)
chr2 (305-396)||(38584083-38584176)
chr2 (326-396)||(38584168-38584242)
chr2 (325-369)||(38584136-38584180)
chr2 (438-492)||(1173573-1173627)
chr2 (325-395)||(1173583-1173653)
[»] chr3 (10 HSPs)
chr3 (320-492)||(46691968-46692141)
chr3 (266-396)||(46692006-46692137)
chr3 (305-418)||(42530711-42530824)
chr3 (20-161)||(46691818-46691955)
chr3 (396-488)||(42530733-42530825)
chr3 (20-142)||(50295902-50296018)
chr3 (40-181)||(42530947-42531090)
chr3 (626-712)||(50295292-50295379)
chr3 (112-312)||(42530725-42530947)
chr3 (333-369)||(50295550-50295586)
[»] scaffold0499 (1 HSPs)
scaffold0499 (332-369)||(7304-7341)
[»] scaffold0025 (1 HSPs)
scaffold0025 (341-371)||(154938-154968)


Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-145; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-145
Query Start/End: Original strand, 20 - 365
Target Start/End: Complemental strand, 24137335 - 24136981
Alignment:
Q  20 catccaaacaatagaaccattagagagaagcagtcatacataagatccagaaccaatagagtagtaaccaaagaatcatcaaaagcgggagaaatgcaat 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||    
T  24137335 catccaaacaatagaaccattagagagaagcagtcatacataagatccagaaccaatagagtagtatccaaagaatcatcaaaagtgggagaagtgcaat 24137236  T
Q  120 cagaagaatcaaaagggggagaaatacaatcaatcagaagaaccaaaagggggagaagtgcattagaagaaccaaaagggggagaagcgcaatcaattaa 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||     
T  24137235 cagaagaatcaaaagggggagaaatacaatcaatcagaagaaccaaaagggggagaagtgcattagaagaaccaaaagggggagaagtgcaatctattag 24137136  T
Q  220 aagaaccaaaagggggtagagaaaccaaattgtgagcactcaattcaccaaac--------gtgagaactagactcaccaaacaaccaaattaaagaatc 311  Q
    |||||||||||||||| ||| |||||||||||||||||||||| |||||||||        ||||||||||||||||||||||||||||||| |||||||    
T  24137135 aagaaccaaaaggggggagaaaaaccaaattgtgagcactcaactcaccaaacaaccaaatgtgagaactagactcaccaaacaaccaaattgaagaatc 24137036  T
Q  312 agaagggg-gaagaaaccaaattgtgagcactcgactcaccaaacaaccaaattg 365  Q
    | | |||| ||||||||||||||||||| ||| ||||||||||||||||||||||    
T  24137035 aaagggggagaagaaaccaaattgtgagaactagactcaccaaacaaccaaattg 24136981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 195; E-Value: 1e-105
Query Start/End: Original strand, 273 - 551
Target Start/End: Complemental strand, 24137012 - 24136746
Alignment:
Q  273 gtgagaactagactcaccaaacaaccaaattaaagaatcagaaggggg-aagaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaa 371  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  24137012 gtgagaactagactcaccaaacaaccaaattgaagaatcagaaggggggaagaaacaaaattgtgagcactcgactcaccaaacaaccaaattgtgagaa 24136913  T
Q  372 gtcggctcaccaaacaaccaaattgaagaatcaaaaggggagaagaaaccaaattgtaagcacacgctcaccaaacaaccataatgtgagaactcgattc 471  Q
    |||||||||||||||||||||||||||||||||||||         || |||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  24136912 gtcggctcaccaaacaaccaaattgaagaatcaaaag---------aagcaaattgtaagcacacgctcaccaaacaaccataatgtgagaactcgactc 24136822  T
Q  472 acccaacaagcaaattatgagtgctttacataccaaacaaacaaacaaacaaaccaattgtaagcgctattttgactcac 551  Q
    |||||||||||||||||||||||||||||||||    ||||||||| |||||||||||||| ||| ||||||||||||||    
T  24136821 acccaacaagcaaattatgagtgctttacatac----caaacaaacgaacaaaccaattgtgagcactattttgactcac 24136746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 324 - 452
Target Start/End: Complemental strand, 24137114 - 24136986
Alignment:
Q  324 aaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaattgaagaatcaaaaggggagaagaaaccaa 423  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||| | | |||||||||||||||||||||||||||||| ||||||||||||||||    
T  24137114 aaaccaaattgtgagcactcaactcaccaaacaaccaaat-gtgagaactagactcaccaaacaaccaaattgaagaatcaaagggggagaagaaaccaa 24137016  T
Q  424 attgtaagcac-acgctcaccaaacaacca 452  Q
    ||||| || || |  |||||||||||||||    
T  24137015 attgtgagaactagactcaccaaacaacca 24136986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 622 - 713
Target Start/End: Complemental strand, 24136675 - 24136584
Alignment:
Q  622 gaaccaagacaagctgaaccaaagtaagcaaaacagacatagacaaacaaccaattaaccatacacaaacacaatgaaacacacgaagactc 713  Q
    |||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  24136675 gaaccaagacaagctgaaccaaagcaaccaagacagacatagacaaacaaccaattaaccaaacacaaacacaatgaaacacacgaagactc 24136584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 356 - 487
Target Start/End: Complemental strand, 24137021 - 24136889
Alignment:
Q  356 aaccaaattgtgagaagtcggctcaccaaacaaccaaattgaagaatcaaaaggggagaagaaaccaaattgtaagcacacg-ctcaccaaacaaccata 454  Q
    |||||||||||||||| | | |||||||||||||||||||||||||||| |||||| |||||||| ||||||| ||||| || ||||||||||||||| |    
T  24137021 aaccaaattgtgagaactagactcaccaaacaaccaaattgaagaatcagaaggggggaagaaacaaaattgtgagcactcgactcaccaaacaaccaaa 24136922  T
Q  455 atgtgagaactcgattcacccaacaagcaaatt 487  Q
     |||||||| |||  ||||| ||||| ||||||    
T  24136921 ttgtgagaagtcggctcaccaaacaaccaaatt 24136889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 89 - 181
Target Start/End: Complemental strand, 9512116 - 9512024
Alignment:
Q  89 aaagaatcatcaaaagcgggagaaatgcaatcagaagaatcaaaagggggagaaatacaatcaatcagaagaaccaaaagggggagaagtgca 181  Q
    |||||||||||||||| ||||||| |||||||| |||||||||||||||||||||| |||||||| |||||||||||||   |||||||||||    
T  9512116 aaagaatcatcaaaagtgggagaagtgcaatcaaaagaatcaaaagggggagaaatgcaatcaatgagaagaaccaaaacaaggagaagtgca 9512024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 325 - 393
Target Start/End: Complemental strand, 9511845 - 9511777
Alignment:
Q  325 aaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaa 393  Q
    ||||||||||||||||||||||||||||||||||| || |||||| | ||| |||||||||||| ||||    
T  9511845 aaccaaattgtgagcactcgactcaccaaacaaccgaagtgtgagcactcgactcaccaaacaaacaaa 9511777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 304 - 369
Target Start/End: Original strand, 11335370 - 11335437
Alignment:
Q  304 aaagaatcagaaggggga--agaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgag 369  Q
    ||||||||| ||||||||  ||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  11335370 aaagaatcaaaagggggagaagaaaccaaattgtgagcattcgactcaccaaacaaccaaagtgtgag 11335437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 304 - 390
Target Start/End: Complemental strand, 9511899 - 9511811
Alignment:
Q  304 aaagaatcagaaggggga--agaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaacc 390  Q
    ||||||||| ||||||||  ||||| ||||||||||| | |  ||||||||||||||||||||||||| | ||| ||||||||||||||    
T  9511899 aaagaatcaaaagggggataagaaatcaaattgtgagtatttaactcaccaaacaaccaaattgtgagcactcgactcaccaaacaacc 9511811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 184 - 272
Target Start/End: Original strand, 11335335 - 11335423
Alignment:
Q  184 agaagaaccaaaagggggagaagcgcaatcaattaaaagaaccaaaagggggtagagaaaccaaattgtgagcactcaattcaccaaac 272  Q
    ||||||| ||| ||||||||||| | ||||||| ||||||| ||||||||||   ||||||||||||||||||| || | |||||||||    
T  11335335 agaagaatcaatagggggagaagtgtaatcaatcaaaagaatcaaaagggggagaagaaaccaaattgtgagcattcgactcaccaaac 11335423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 116 - 177
Target Start/End: Original strand, 11335330 - 11335391
Alignment:
Q  116 caatcagaagaatcaaaagggggagaaatacaatcaatcagaagaaccaaaagggggagaag 177  Q
    |||||||||||||||| |||||||||| |  ||||||||| ||||| |||||||||||||||    
T  11335330 caatcagaagaatcaatagggggagaagtgtaatcaatcaaaagaatcaaaagggggagaag 11335391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 171
Target Start/End: Complemental strand, 9511981 - 9511926
Alignment:
Q  116 caatcagaagaatcaaaagggggagaaatacaatcaatcagaagaaccaaaagggg 171  Q
    |||| ||||||||||| | |||||||| | |||||||||||||||| |||||||||    
T  9511981 caatgagaagaatcaatatggggagaagtgcaatcaatcagaagaatcaaaagggg 9511926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 397 - 461
Target Start/End: Original strand, 11335371 - 11335437
Alignment:
Q  397 aagaatcaaaagggg-agaagaaaccaaattgtaagcacacg-ctcaccaaacaaccataatgtgag 461  Q
    ||||||||||||||| ||||||||||||||||| ||||  || ||||||||||||||| | ||||||    
T  11335371 aagaatcaaaagggggagaagaaaccaaattgtgagcattcgactcaccaaacaaccaaagtgtgag 11335437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 655 - 712
Target Start/End: Original strand, 11335661 - 11335716
Alignment:
Q  655 cagacatagacaaacaaccaattaaccatacacaaacacaatgaaacacacgaagact 712  Q
    |||||| |||| |||||||||||||||| ||||||| |||  ||||||||||||||||    
T  11335661 cagacagagacgaacaaccaattaaccaaacacaaataca--gaaacacacgaagact 11335716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 396 - 487
Target Start/End: Complemental strand, 24137136 - 24137044
Alignment:
Q  396 gaagaatcaaaaggggaga-agaaaccaaattgtaagcacacg-ctcaccaaacaaccataatgtgagaactcgattcacccaacaagcaaatt 487  Q
    |||||| ||||||||| || | |||||||||||| ||||| |  ||||||||||||||| |||||||||||| || ||||| ||||| ||||||    
T  24137136 gaagaaccaaaaggggggagaaaaaccaaattgtgagcactcaactcaccaaacaacca-aatgtgagaactagactcaccaaacaaccaaatt 24137044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 167; Significance: 5e-89; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 167; E-Value: 5e-89
Query Start/End: Original strand, 266 - 551
Target Start/End: Complemental strand, 20242183 - 20241903
Alignment:
Q  266 accaaacgtgagaactagactcaccaaacaaccaaattaaagaatcagaagggg-gaagaaaccaaattgtgagcactcgactcaccaaacaaccaaatt 364  Q
    |||||| |||||||||  |||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||| || ||||||||||||||||| |    
T  20242183 accaaatgtgagaactctactcaccaaacaaccaaattgaagaatcaaaaggggagaagaaaccaaattgtgagcacacg-ctcaccaaacaaccaaagt 20242085  T
Q  365 gtgagaagtcggctcaccaaacaaccaaattgaagaatcaaaaggggagaagaaaccaaattgtaagcacacgctcaccaaacaaccataatgtgagaac 464  Q
    ||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  20242084 gtgagaactcgactcaccaaaccaccaaattgaagaatcaaaaggggagaagaaaccaaattgtgagcacacgctcaccaaacaaccaaaatgtgagaac 20241985  T
Q  465 tcgattcacccaacaagcaaattatgagtgctttacataccaaacaaacaaacaaacaaaccaattgtaagcgctattttgactcac 551  Q
    |||| ||||| |||||||||||||||||||||      ||| | ||||||||| ||||||| |||||| ||| ||||||||||||||    
T  20241984 tcgactcaccaaacaagcaaattatgagtgct-----gacccaccaaacaaacgaacaaactaattgtgagcactattttgactcac 20241903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 150; E-Value: 7e-79
Query Start/End: Original strand, 295 - 551
Target Start/End: Original strand, 20250913 - 20251164
Alignment:
Q  295 aaccaaattaaagaatcagaagggg-gaagaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaa 393  Q
    ||||||||| |||||||| |||||| |||||||||||||||||||||| || ||||||||||||||||| |||||||| ||| |||||||||| ||||||    
T  20250913 aaccaaattgaagaatcaaaaggggagaagaaaccaaattgtgagcacacg-ctcaccaaacaaccaaagtgtgagaactcgactcaccaaaccaccaaa 20251011  T
Q  394 ttgaagaatcaaaaggggagaagaaaccaaattgtaagcacacgctcaccaaacaaccataatgtgagaactcgattcacccaacaagcaaattatgagt 493  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||    
T  20251012 ttgaagaatcaaaaggggagaagaaaccaaattgtgagcacacgctcaccaaacaaccaaaatgtgagaactcgactcaccaaacaagcaaattatgagt 20251111  T
Q  494 gctttacataccaaacaaacaaacaaacaaaccaattgtaagcgctattttgactcac 551  Q
    |||      ||| | ||||||||| ||||||| |||||| ||| ||||||||||||||    
T  20251112 gct-----gacccaccaaacaaacgaacaaactaattgtgagcactattttgactcac 20251164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 295 - 487
Target Start/End: Complemental strand, 20242247 - 20242054
Alignment:
Q  295 aaccaaattaaagaatcagaaggggga--agaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaa 392  Q
    ||||||||| |||||||| ||||||||  |||||||||||||||||||| | |||||||| ||||||||| |||||||| ||  ||||||||||||||||    
T  20242247 aaccaaattgaagaatcaaaagggggagaagaaaccaaattgtgagcacactactcaccagacaaccaaa-tgtgagaactctactcaccaaacaaccaa 20242149  T
Q  393 attgaagaatcaaaaggggagaagaaaccaaattgtaagcacacgctcaccaaacaaccataatgtgagaactcgattcacccaacaagcaaatt 487  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||| ||||| ||| | ||||||    
T  20242148 attgaagaatcaaaaggggagaagaaaccaaattgtgagcacacgctcaccaaacaaccaaagtgtgagaactcgactcaccaaaccaccaaatt 20242054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 273 - 395
Target Start/End: Original strand, 20250983 - 20251105
Alignment:
Q  273 gtgagaactagactcaccaaacaaccaaattaaagaatcagaagggg-gaagaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaa 371  Q
    ||||||||| |||||||||||| |||||||| |||||||| |||||| |||||||||||||||||||||| || ||||||||||||||||| ||||||||    
T  20250983 gtgagaactcgactcaccaaaccaccaaattgaagaatcaaaaggggagaagaaaccaaattgtgagcacacg-ctcaccaaacaaccaaaatgtgagaa 20251081  T
Q  372 gtcggctcaccaaacaaccaaatt 395  Q
     ||| |||||||||||| ||||||    
T  20251082 ctcgactcaccaaacaagcaaatt 20251105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 181
Target Start/End: Complemental strand, 20242391 - 20242326
Alignment:
Q  116 caatcagaagaatcaaaagggggagaaatacaatcaatcagaagaaccaaaagggggagaagtgca 181  Q
    |||||||||||||| | | ||||| || | |||||||||| ||||| |||||||||||||||||||    
T  20242391 caatcagaagaatccataaggggataagtgcaatcaatcaaaagaatcaaaagggggagaagtgca 20242326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 181
Target Start/End: Original strand, 20250769 - 20250834
Alignment:
Q  116 caatcagaagaatcaaaagggggagaaatacaatcaatcagaagaaccaaaagggggagaagtgca 181  Q
    |||||||||||||| | | ||||| || | |||||||||| ||||| |||||||||||||||||||    
T  20250769 caatcagaagaatccataaggggataagtgcaatcaatcaaaagaatcaaaagggggagaagtgca 20250834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 167; Significance: 5e-89; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 167; E-Value: 5e-89
Query Start/End: Original strand, 266 - 551
Target Start/End: Complemental strand, 44338506 - 44338226
Alignment:
Q  266 accaaacgtgagaactagactcaccaaacaaccaaattaaagaatcagaagggg-gaagaaaccaaattgtgagcactcgactcaccaaacaaccaaatt 364  Q
    |||||| |||||||||  |||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||| || ||||||||||||||||| |    
T  44338506 accaaatgtgagaactctactcaccaaacaaccaaattgaagaatcaaaaggggagaagaaaccaaattgtgagcacacg-ctcaccaaacaaccaaagt 44338408  T
Q  365 gtgagaagtcggctcaccaaacaaccaaattgaagaatcaaaaggggagaagaaaccaaattgtaagcacacgctcaccaaacaaccataatgtgagaac 464  Q
    ||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  44338407 gtgagaactcgactcaccaaaccaccaaattgaagaatcaaaaggggagaagaaaccaaattgtgagcacacgctcaccaaacaaccaaaatgtgagaac 44338308  T
Q  465 tcgattcacccaacaagcaaattatgagtgctttacataccaaacaaacaaacaaacaaaccaattgtaagcgctattttgactcac 551  Q
    |||| ||||| |||||||||||||||||||||      ||| | ||||||||| ||||||| |||||| ||| ||||||||||||||    
T  44338307 tcgactcaccaaacaagcaaattatgagtgct-----gacccaccaaacaaacgaacaaactaattgtgagcactattttgactcac 44338226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 295 - 487
Target Start/End: Complemental strand, 44338570 - 44338377
Alignment:
Q  295 aaccaaattaaagaatcagaaggggga--agaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaa 392  Q
    ||||||||| |||||||| ||||||||  |||||||||||||||||||| | |||||||| ||||||||| |||||||| ||  ||||||||||||||||    
T  44338570 aaccaaattgaagaatcaaaagggggagaagaaaccaaattgtgagcacactactcaccagacaaccaaa-tgtgagaactctactcaccaaacaaccaa 44338472  T
Q  393 attgaagaatcaaaaggggagaagaaaccaaattgtaagcacacgctcaccaaacaaccataatgtgagaactcgattcacccaacaagcaaatt 487  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||| ||||| ||| | ||||||    
T  44338471 attgaagaatcaaaaggggagaagaaaccaaattgtgagcacacgctcaccaaacaaccaaagtgtgagaactcgactcaccaaaccaccaaatt 44338377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 266 - 487
Target Start/End: Original strand, 15623046 - 15623269
Alignment:
Q  266 accaaacgtgagaactagactcaccaaacaaccaaattaaagaatcagaagggg--gaagaaaccaaattgtgagcactcgactcaccaaacaaccaaat 363  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||||| |||||  |||||||| ||||||||||||||| ||||||||||||||||||     
T  15623046 accaaatgtgagaactagactcaccaaacaaccaaattgaagaatcagtagggggagaagaaacaaaattgtgagcactcaactcaccaaacaaccaaa- 15623144  T
Q  364 tgtgagaagtcggctcaccaaacaaccaaattgaagaatc-aaaaggggagaagaaaccaaattgtaagcacac-gctcaccaaacaaccataatgtgag 461  Q
    |||||||| | | |||||||||||||||||||||||||||   | ||||||||||||| ||||||| ||||| |  |||||||||||| || ||||||||    
T  15623145 tgtgagaactagactcaccaaacaaccaaattgaagaatcggtagggggagaagaaacaaaattgtgagcactcaactcaccaaacaatca-aatgtgag 15623243  T
Q  462 aactcgattcacccaacaagcaaatt 487  Q
    |||| || ||||| ||||| ||||||    
T  15623244 aactagactcaccaaacaaccaaatt 15623269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 396 - 551
Target Start/End: Original strand, 46963798 - 46963953
Alignment:
Q  396 gaagaatcaaaaggggagaagaaaccaaattgtaagcacacgctcaccaaacaaccataatgtgagaactcgattcacccaacaagcaaattatgagtgc 495  Q
    ||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||| | |||||||| |||| ||||| |||||||||||||||||| |    
T  46963798 gaagaataaaaaggggagaagaaaccaaattgtgagcacatgctcaccaaacaaccaaagtgtgagaaatcgactcaccaaacaagcaaattatgagttc 46963897  T
Q  496 tttacataccaaacaaacaaacaaacaaaccaattgtaagcgctattttgactcac 551  Q
    || ||  ||||||||||||||  |||||||||||||| ||| ||||||||||||||    
T  46963898 ttgacccaccaaacaaacaaatgaacaaaccaattgtgagcactattttgactcac 46963953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 239 - 428
Target Start/End: Original strand, 15623104 - 15623303
Alignment:
Q  239 agaaaccaaattgtgagcactcaattcaccaaac--------gtgagaactagactcaccaaacaaccaaattaaagaatcagaaggggga--agaaacc 328  Q
    |||||| ||||||||||||||||| |||||||||        ||||||||||||||||||||||||||||||| ||||||| | |||||||  ||||||     
T  15623104 agaaacaaaattgtgagcactcaactcaccaaacaaccaaatgtgagaactagactcaccaaacaaccaaattgaagaatcggtagggggagaagaaaca 15623203  T
Q  329 aaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaattgaagaatca-aaaggggagaagaaaccaaattg 427  Q
    ||||||||||||||| ||||||||||||| ||||| ||||||| | | ||||||||||||||||||||||||| ||  | ||||||||||||||||||||    
T  15623204 aaattgtgagcactcaactcaccaaacaatcaaat-gtgagaactagactcaccaaacaaccaaattgaagaaccagtacggggagaagaaaccaaattg 15623302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 317 - 487
Target Start/End: Original strand, 15623006 - 15623176
Alignment:
Q  317 ggggaagaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaattgaagaatca-aaaggggagaa 415  Q
    |||||||||||| ||| |||||||| |||||||||||||||||||| |||||||| | | ||||||||||||||||||||||||||||  | ||||||||    
T  15623006 ggggaagaaaccgaatcgtgagcacacgactcaccaaacaaccaaa-tgtgagaactagactcaccaaacaaccaaattgaagaatcagtagggggagaa 15623104  T
Q  416 gaaaccaaattgtaagcacac-gctcaccaaacaaccataatgtgagaactcgattcacccaacaagcaaatt 487  Q
    ||||| ||||||| ||||| |  ||||||||||||||| |||||||||||| || ||||| ||||| ||||||    
T  15623105 gaaacaaaattgtgagcactcaactcaccaaacaacca-aatgtgagaactagactcaccaaacaaccaaatt 15623176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 20 - 181
Target Start/End: Original strand, 46963441 - 46963600
Alignment:
Q  20 catccaaacaatagaaccattagagagaagcagtcatacataagatccagaaccaatagagtagtaaccaaagaatcatcaaaagcgggagaaatgcaat 119  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||      |||||||||| || |||||||||||||||||||| ||||||| ||||||    
T  46963441 catccaaacaatagaaccagtagagagaagcagccatacataaga------accaatagaggag-aaccaaagaatcatcaaaagtgggagaagtgcaat 46963533  T
Q  120 cagaagaatcaaaa---gggggagaaatacaat-caatcagaagaaccaaaa-gggggagaagtgca 181  Q
    ||||||||||||||   ||||||||| | |||| ||||| |||||| ||||| ||||||||||||||    
T  46963534 cagaagaatcaaaaaaggggggagaagtgcaatgcaatcggaagaatcaaaaggggggagaagtgca 46963600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 84 - 181
Target Start/End: Complemental strand, 21814053 - 21813955
Alignment:
Q  84 taaccaaagaatcatcaaaagcgggagaaatgcaatcagaagaatcaaaagggggagaaatacaatcaatcagaagaa-ccaaaagggggagaagtgca 181  Q
    ||||||||||||||||||||| ||||||| |||||| |||| |||||||||||||||||||||||| ||||||||||| | ||||||| ||||||||||    
T  21814053 taaccaaagaatcatcaaaagtgggagaagtgcaattagaacaatcaaaagggggagaaatacaatgaatcagaagaatcaaaaagggagagaagtgca 21813955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 239 - 338
Target Start/End: Original strand, 15623197 - 15623306
Alignment:
Q  239 agaaaccaaattgtgagcactcaattcaccaaac--------gtgagaactagactcaccaaacaaccaaattaaagaatcagaa--gggggaagaaacc 328  Q
    |||||| ||||||||||||||||| |||||||||        ||||||||||||||||||||||||||||||| ||||| ||| |  ||| |||||||||    
T  15623197 agaaacaaaattgtgagcactcaactcaccaaacaatcaaatgtgagaactagactcaccaaacaaccaaattgaagaaccagtacggggagaagaaacc 15623296  T
Q  329 aaattgtgag 338  Q
    ||||||||||    
T  15623297 aaattgtgag 15623306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 325 - 388
Target Start/End: Complemental strand, 21813887 - 21813824
Alignment:
Q  325 aaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaa 388  Q
    |||||||||||||||||||||||||||||||||||||| |||||| | | | ||||||||||||    
T  21813887 aaccaaattgtgagcactcgactcaccaaacaaccaaagtgtgagcacttgactcaccaaacaa 21813824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 320 - 395
Target Start/End: Original strand, 46963815 - 46963889
Alignment:
Q  320 gaagaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaatt 395  Q
    ||||||||||||||||||||||  | ||||||||||||||||| |||||||| ||| |||||||||||| ||||||    
T  46963815 gaagaaaccaaattgtgagcacatg-ctcaccaaacaaccaaagtgtgagaaatcgactcaccaaacaagcaaatt 46963889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 320 - 396
Target Start/End: Original strand, 11828573 - 11828649
Alignment:
Q  320 gaagaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaattg 396  Q
    ||||||||||||||||||| |||  |||||||||||||||||| |||||| |  || ||||||| ||||||||||||    
T  11828573 gaagaaaccaaattgtgagtacttaactcaccaaacaaccaaaatgtgagcacccgactcaccagacaaccaaattg 11828649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 46963681 - 46963737
Alignment:
Q  112 aatgcaatcagaagaatcaaaagggggagaaatacaatcaatcagaagaaccaaaag 168  Q
    |||||||||||||||| ||| |||||||||||| |||||||||||||||| ||||||    
T  46963681 aatgcaatcagaagaaccaatagggggagaaatgcaatcaatcagaagaatcaaaag 46963737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 181
Target Start/End: Complemental strand, 44338714 - 44338649
Alignment:
Q  116 caatcagaagaatcaaaagggggagaaatacaatcaatcagaagaaccaaaagggggagaagtgca 181  Q
    |||||||||||||| | | ||||| || | |||||||||| ||||| |||||||||||||||||||    
T  44338714 caatcagaagaatccataaggggataagtgcaatcaatcaaaagaatcaaaagggggagaagtgca 44338649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 325 - 369
Target Start/End: Original strand, 11828609 - 11828653
Alignment:
Q  325 aaccaaattgtgagcactcgactcaccaaacaaccaaattgtgag 369  Q
    ||||||| ||||||||| |||||||||| ||||||||||||||||    
T  11828609 aaccaaaatgtgagcacccgactcaccagacaaccaaattgtgag 11828653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 328 - 368
Target Start/End: Original strand, 24487088 - 24487128
Alignment:
Q  328 caaattgtgagcactcgactcaccaaacaaccaaattgtga 368  Q
    ||||||||||| ||| |||||||||||||||||||||||||    
T  24487088 caaattgtgagaacttgactcaccaaacaaccaaattgtga 24487128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 305 - 393
Target Start/End: Complemental strand, 21813940 - 21813850
Alignment:
Q  305 aagaatcagaaggggga--agaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaa 393  Q
    |||||||| ||||||||  | ||||||||||||| | |||    ||||||| ||||||||||||||| | ||| |||||||||||||||||    
T  21813940 aagaatcaaaagggggagaaaaaaccaaattgtgggtacttatttcaccaagcaaccaaattgtgagcactcgactcaccaaacaaccaaa 21813850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 169
Target Start/End: Original strand, 24486942 - 24486984
Alignment:
Q  127 atcaaaagggggagaaatacaatcaatcagaagaaccaaaagg 169  Q
    ||||||||||| |||| |||||||||||||||||| |||||||    
T  24486942 atcaaaaggggtagaagtacaatcaatcagaagaatcaaaagg 24486984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 148; Significance: 1e-77; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 239 - 551
Target Start/End: Complemental strand, 21862311 - 21861990
Alignment:
Q  239 agaaaccaaattgtgagcactcaattcaccaaac--------gtgagaactagactcaccaaacaaccaaattaaagaatcagaaggggg------aaga 324  Q
    |||||||||||||||||||||| | |||||||||        |||||| |||||||||||||||||||||||| ||||||||||||||||      | ||    
T  21862311 agaaaccaaattgtgagcactcgactcaccaaacaaccaaatgtgagagctagactcaccaaacaaccaaattgaagaatcagaagggggggggagagga 21862212  T
Q  325 aaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaattgaa-gaatcaaaaggggagaagaaaccaa 423  Q
    ||||||||  ||||||||||||||||||||||||||||| ||||||| | | |||||||||||||||||||||| |||||||||||||||||||||||||    
T  21862211 aaccaaatattgagcactcgactcaccaaacaaccaaat-gtgagaactagactcaccaaacaaccaaattgaacgaatcaaaaggggagaagaaaccaa 21862113  T
Q  424 attgtaagcacacgctcaccaaacaaccataatgtgagaactcgattcacccaacaagcaaattatgagtgctttacataccaaacaaacaaacaaacaa 523  Q
    ||||| |||||||||||| |||||||||| |||||||||| |||| ||||| |||||||||||| |||| |||||     || | |||||||||||||||    
T  21862112 attgtgagcacacgctcaacaaacaaccaaaatgtgagaattcgactcaccaaacaagcaaattgtgagcgcttt-----cccaccaaacaaacaaacaa 21862018  T
Q  524 accaattgtaagcgctattttgactcac 551  Q
    ||||||||| ||  ||||||||||||||    
T  21862017 accaattgtgagaactattttgactcac 21861990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 276 - 520
Target Start/End: Complemental strand, 13167604 - 13167359
Alignment:
Q  276 agaactagactcaccaaacaaccaaattaaagaatcagaaggggga--agaaaccaaattgtgagcactcgactcacca-aacaaccaaattgtgagaag 372  Q
    |||||||||||||||||||||||||||| |||||||||||||||||  |||||||||| |||||||||||||||||||  |||||  |||| |||||||     
T  13167604 agaactagactcaccaaacaaccaaattgaagaatcagaagggggagaagaaaccaaactgtgagcactcgactcaccggaacaatgaaat-gtgagaat 13167506  T
Q  373 tcggctcaccaaacaaccaaattgaagaatcaaaaggggagaagaaaccaaattgtaagcacacgctcaccaaacaaccataatgtgagaactcgattca 472  Q
    |   ||||||| ||||||||||||||||| ||||||||||||||| |||||||||| |||| ||||||| ||||||| || | |||||||| |||| |||    
T  13167505 tttactcaccacacaaccaaattgaagaaccaaaaggggagaagacaccaaattgtgagcatacgctcagcaaacaa-caaagtgtgagaattcgactca 13167407  T
Q  473 cccaacaagcaaattatgagtgctttacataccaaacaaacaaacaaa 520  Q
    || ||||||||||||  |||  ||| ||  ||||||||||||||||||    
T  13167406 ccaaacaagcaaattgcgagcacttgacccaccaaacaaacaaacaaa 13167359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 273 - 487
Target Start/End: Complemental strand, 21862363 - 21862142
Alignment:
Q  273 gtgagaactagactcaccaaacaaccaaattaaagaatcagaaggggg---aagaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgag 369  Q
    ||||||| ||||||||||||||||||||||| |||||||| || ||||   |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  21862363 gtgagaattagactcaccaaacaaccaaattgaagaatcaaaatgggggagaagaaaccaaattgtgagcactcgactcaccaaacaaccaaa-tgtgag 21862265  T
Q  370 aagtcggctcaccaaacaaccaaattgaagaatcaaaa-----ggggagaagaaaccaaattgtaagcacacg-ctcaccaaacaaccataatgtgagaa 463  Q
    |  | | |||||||||||||||||||||||||||| ||     ||||||| ||||||||||  | ||||| || ||||||||||||||| ||||||||||    
T  21862264 agctagactcaccaaacaaccaaattgaagaatcagaagggggggggagaggaaaccaaatattgagcactcgactcaccaaacaacca-aatgtgagaa 21862166  T
Q  464 ctcgattcacccaacaagcaaatt 487  Q
    || || ||||| ||||| ||||||    
T  21862165 ctagactcaccaaacaaccaaatt 21862142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 266 - 383
Target Start/End: Original strand, 28063583 - 28063699
Alignment:
Q  266 accaaacgtgagaactagactcaccaaacaaccaaattaaagaatcagaagggggaagaaaccaaattgtgagcactcgactcaccaaacaaccaaattg 365  Q
    |||||| ||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||  |||||||||||||||| |||||    
T  28063583 accaaatgtgagaactagactcaccaaacaaccaaattgaagaatcaaaagggagaagaaaccaaattgtgagcacctgactcaccaaacaacc-aattg 28063681  T
Q  366 tgagaagtcggctcacca 383  Q
    |||| | |||||||||||    
T  28063682 tgagcactcggctcacca 28063699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 21 - 229
Target Start/End: Original strand, 9291018 - 9291228
Alignment:
Q  21 atccaaacaatagaaccattagagagaagcagtcatacataagatccagaaccaatagagtagtaaccaaagaatcatcaaaagcgggagaaatgcaatc 120  Q
    ||||||| |||||||||| || |||||||||  ||||||||| |      |||||||||| ||||||||||||||||||||||| ||||||| |||||||    
T  9291018 atccaaataatagaaccagtatagagaagcaaccatacataaca------accaatagagaagtaaccaaagaatcatcaaaagtgggagaagtgcaatc 9291111  T
Q  121 agaagaatc-aaaagggggagaaatacaat-caatcagaagaaccaaaagggggagaagtgc-----attagaagaaccaaaa-gggggagaagcgcaat 212  Q
    ||||||||| ||||||||||||| | |||| |||||| ||||| |||| | |||||||||||     || ||||||||||||| |||||||||| |||||    
T  9291112 agaagaatcaaaaagggggagaagtgcaatgcaatcaaaagaatcaaaggagggagaagtgcaatcaatcagaagaaccaaaaggggggagaagtgcaat 9291211  T
Q  213 caattaaaagaaccaaa 229  Q
    |||| | ||||| ||||    
T  9291212 caatcagaagaatcaaa 9291228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 294 - 452
Target Start/End: Original strand, 28063518 - 28063677
Alignment:
Q  294 caaccaaattaaagaatcagaaggggg--aagaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaacca 391  Q
    ||||||| | ||||||||| |||||||  |||||| ||||||| ||| | || ||| ||||||||||||||| ||||||| | | |||||||||||||||    
T  28063518 caaccaactgaaagaatcaaaagggggtgaagaaatcaaattgggagaattcaacttaccaaacaaccaaat-gtgagaactagactcaccaaacaacca 28063616  T
Q  392 aattgaagaatcaaaaggggagaagaaaccaaattgtaagcacacg-ctcaccaaacaacca 452  Q
    |||||||||||||||| |||||||||||||||||||| |||||  | |||||||||||||||    
T  28063617 aattgaagaatcaaaa-gggagaagaaaccaaattgtgagcacctgactcaccaaacaacca 28063677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 357 - 487
Target Start/End: Complemental strand, 21862371 - 21862239
Alignment:
Q  357 accaaattgtgagaagtcggctcaccaaacaaccaaattgaagaatcaaaa--ggggagaagaaaccaaattgtaagcacacg-ctcaccaaacaaccat 453  Q
    |||||| |||||||| | | |||||||||||||||||||||||||||||||  ||||||||||||||||||||| ||||| || |||||||||||||||     
T  21862371 accaaagtgtgagaattagactcaccaaacaaccaaattgaagaatcaaaatgggggagaagaaaccaaattgtgagcactcgactcaccaaacaacca- 21862273  T
Q  454 aatgtgagaactcgattcacccaacaagcaaatt 487  Q
    ||||||||| || || ||||| ||||| ||||||    
T  21862272 aatgtgagagctagactcaccaaacaaccaaatt 21862239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 112 - 181
Target Start/End: Complemental strand, 22860976 - 22860908
Alignment:
Q  112 aatgcaatcagaagaatcaaaagggggagaaatacaatcaatcagaagaaccaaaagggggagaagtgca 181  Q
    |||||||||||||||| |||||||||||||||| ||||||||| |||||||||||| |||||||||||||    
T  22860976 aatgcaatcagaagaaccaaaagggggagaaatgcaatcaatcggaagaaccaaaa-ggggagaagtgca 22860908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 622 - 712
Target Start/End: Complemental strand, 21861884 - 21861793
Alignment:
Q  622 gaaccaagacaagctgaaccaaagtaagcaaa-acagacatagacaaacaaccaattaaccatacacaaacacaatgaaacacacgaagact 712  Q
    ||||||||||||||||| |||||| || || | ||| |||||||| |||||||||||||||| |||||||||||| || |||||||||||||    
T  21861884 gaaccaagacaagctgagccaaagcaaccagagacatacatagacgaacaaccaattaaccaaacacaaacacaaagagacacacgaagact 21861793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 116 - 181
Target Start/End: Complemental strand, 22861007 - 22860941
Alignment:
Q  116 caatcagaagaatcaaaagggggagaaatacaat-caatcagaagaaccaaaagggggagaagtgca 181  Q
    |||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||| ||||    
T  22861007 caatcagaagaaccaaaagggggagaaatgcaatgcaatcagaagaaccaaaagggggagaaatgca 22860941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 28063456 - 28063508
Alignment:
Q  85 aaccaaagaatcatcaaaagcgggagaaatgcaatcagaagaatcaaaagggg 137  Q
    |||||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  28063456 aaccaaagaatcatcaaaagtgggagaaatgcaatcagaaggatcaaaagggg 28063508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 149 - 234
Target Start/End: Complemental strand, 22861008 - 22860917
Alignment:
Q  149 tcaatcagaagaaccaaaagggggagaagtgcatt------agaagaaccaaaagggggagaagcgcaatcaattaaaagaaccaaaagggg 234  Q
    |||||||||||||||||||||||||||| |||| |      ||||||||||||||||||||||  |||||||||   |||||||||||||||    
T  22861008 tcaatcagaagaaccaaaagggggagaaatgcaatgcaatcagaagaaccaaaagggggagaaatgcaatcaatcggaagaaccaaaagggg 22860917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 622 - 710
Target Start/End: Complemental strand, 10741417 - 10741328
Alignment:
Q  622 gaaccaagacaagctgaaccaaagtaagcaaa-acagacatagacaaacaaccaattaaccatacacaaacacaatgaaacacacgaaga 710  Q
    |||| |||||||||||||| |||  || |||| | ||||||| || ||||||||||||| || |||||||||||| ||||||||||||||    
T  10741417 gaacaaagacaagctgaactaaatcaaccaaagatagacataaacgaacaaccaattaatcaaacacaaacacaaagaaacacacgaaga 10741328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 112 - 181
Target Start/End: Complemental strand, 22860869 - 22860797
Alignment:
Q  112 aatgcaatcagaagaatcaaaagggggagaaa--tacaatcaatcagaagaaccaaaag-ggggagaagtgca 181  Q
    |||| ||||||||||||||||| ||||||| |  | ||||||||||||||||||||||| |||||||||||||    
T  22860869 aatggaatcagaagaatcaaaaaggggagagaagtgcaatcaatcagaagaaccaaaaggggggagaagtgca 22860797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 322 - 362
Target Start/End: Complemental strand, 10741569 - 10741529
Alignment:
Q  322 agaaaccaaattgtgagcactcgactcaccaaacaaccaaa 362  Q
    ||||||||||||||||| |||||||||||| ||||||||||    
T  10741569 agaaaccaaattgtgagtactcgactcaccgaacaaccaaa 10741529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 325 - 392
Target Start/End: Complemental strand, 13097970 - 13097903
Alignment:
Q  325 aaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaa 392  Q
    |||||||||||||||||| | |||| ||||||| ||| ||||||| | ||| |||| |||||||||||    
T  13097970 aaccaaattgtgagcacttgtctcaacaaacaaacaatttgtgagcactcgactcatcaaacaaccaa 13097903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 622 - 708
Target Start/End: Complemental strand, 13167269 - 13167182
Alignment:
Q  622 gaaccaagacaagctgaaccaaagtaagcaaa-acagacatagacaaacaaccaattaaccatacacaaacacaatgaaacacacgaa 708  Q
    ||||||||||||||||| |||||| || || | ||| ||||| || |||||||||||||||| | |||||||||  || |||||||||    
T  13167269 gaaccaagacaagctgacccaaagcaaccagagacaaacataaacgaacaaccaattaaccaaatacaaacacagagagacacacgaa 13167182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 181
Target Start/End: Complemental strand, 22860829 - 22860762
Alignment:
Q  116 caatcagaagaatcaaaaggggg-agaaatacaat-caatcagaagaaccaaaagggggagaagtgca 181  Q
    |||||||||||| |||||||||| |||| | |||| |||||||||||| |||||||| ||||||||||    
T  22860829 caatcagaagaaccaaaaggggggagaagtgcaatgcaatcagaagaatcaaaagggagagaagtgca 22860762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 332 - 369
Target Start/End: Complemental strand, 13097932 - 13097895
Alignment:
Q  332 ttgtgagcactcgactcaccaaacaaccaaattgtgag 369  Q
    |||||||||||||||||| ||||||||||| |||||||    
T  13097932 ttgtgagcactcgactcatcaaacaaccaatttgtgag 13097895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 128; Significance: 1e-65; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 20 - 388
Target Start/End: Original strand, 15629728 - 15630107
Alignment:
Q  20 catccaaacaatagaaccattagagagaagcagtcatacataagatccagaaccaatagagtagtaaccaaagaatcatcaaaagcgggagaaatgcaat 119  Q
    |||||||| |||||||||| |||||||| |||  |||||||||||      |||||||||| |||||||||| ||||||||||||  |||||| ||||||    
T  15629728 catccaaaaaatagaaccagtagagagatgcaaccatacataaga------accaatagaggagtaaccaaaaaatcatcaaaagttggagaagtgcaat 15629821  T
Q  120 cagaagaatcaaaa--gggggagaaatacaat-caatcagaagaaccaaaagggggagaagtgcatt-----agaagaaccaaaagggggagaagcgcaa 211  Q
    ||||||||||||||  ||||||||| | |||| |||||| ||||| |||| | |||||||||||| |     | |||||| |||||||||||||| ||||    
T  15629822 cagaagaatcaaaaaagggggagaagtgcaatgcaatcaaaagaatcaaaggagggagaagtgcaatcaatcaaaagaacaaaaagggggagaagtgcaa 15629921  T
Q  212 t-caattaaaagaaccaaaagggggtagagaaaccaaattgtgagcactcaattcaccaaac--------gtgagaactagactcaccaaacaaccaaat 302  Q
    | |||| | ||||| || ||||||  | |||||||||||||||||||||| | |||||||||        ||||||| ||||||||| ||||||||||||    
T  15629922 tgcaatcagaagaatcataaggggaga-agaaaccaaattgtgagcactcgactcaccaaacaaccaaatgtgagaattagactcactaaacaaccaaat 15630020  T
Q  303 taaagaatcagaagggg-gaagaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaa 388  Q
    | |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| | ||| ||||||||||||    
T  15630021 tgaagaatcaaaaggggagaagaaaccaaattgtgagcactcgactcaccaaacaaccaaagtgtgagcactcgactcaccaaacaa 15630107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 305 - 480
Target Start/End: Original strand, 15629931 - 15630107
Alignment:
Q  305 aagaatcagaagggg-gaagaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaattgaagaatc 403  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| | | ||||| |||||||||||||||||||||    
T  15629931 aagaatcataaggggagaagaaaccaaattgtgagcactcgactcaccaaacaaccaaat-gtgagaattagactcactaaacaaccaaattgaagaatc 15630029  T
Q  404 aaaaggggagaagaaaccaaattgtaagcacacg-ctcaccaaacaaccataatgtgagaactcgattcacccaacaa 480  Q
    ||||||||||||||||||||||||| ||||| || ||||||||||||||| | |||||| |||||| ||||| |||||    
T  15630030 aaaaggggagaagaaaccaaattgtgagcactcgactcaccaaacaaccaaagtgtgagcactcgactcaccaaacaa 15630107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 330 - 396
Target Start/End: Original strand, 19825091 - 19825157
Alignment:
Q  330 aattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaattg 396  Q
    |||||||||||||  ||||||||||||||||||||||||| | ||| ||| ||||||||||||||||    
T  19825091 aattgtgagcacttaactcaccaaacaaccaaattgtgagcactcgactcgccaaacaaccaaattg 19825157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 396 - 463
Target Start/End: Original strand, 15629930 - 15629997
Alignment:
Q  396 gaagaatcaaaaggggagaagaaaccaaattgtaagcacacg-ctcaccaaacaaccataatgtgagaa 463  Q
    ||||||||| ||||||||||||||||||||||| ||||| || ||||||||||||||| ||||||||||    
T  15629930 gaagaatcataaggggagaagaaaccaaattgtgagcactcgactcaccaaacaacca-aatgtgagaa 15629997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 325 - 369
Target Start/End: Original strand, 19825117 - 19825161
Alignment:
Q  325 aaccaaattgtgagcactcgactcaccaaacaaccaaattgtgag 369  Q
    |||||||||||||||||||||||| ||||||||||||||||||||    
T  19825117 aaccaaattgtgagcactcgactcgccaaacaaccaaattgtgag 19825161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 233
Target Start/End: Original strand, 3775072 - 3775188
Alignment:
Q  116 caatcagaagaatcaaaagggggagaaatacaatcaatcagaagaaccaaaagggggagaag---tgcattagaagaaccaaaagggggagaagcgcaat 212  Q
    ||||||||||||||||||| | |||||  |||||| |||||||||| ||||| |||||||||   |  || | ||||| ||||||| ||||||  |||||    
T  3775072 caatcagaagaatcaaaagagagagaa--acaatcgatcagaagaatcaaaatggggagaagcaatcaatcaaaagaatcaaaaggaggagaa--gcaat 3775167  T
Q  213 caattaaaagaaccaaaaggg 233  Q
    |||| ||||||| ||||||||    
T  3775168 caatcaaaagaatcaaaaggg 3775188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 179
Target Start/End: Original strand, 12177164 - 12177227
Alignment:
Q  116 caatcagaagaatcaaaagggggagaaatacaatcaatcagaagaaccaaaagggggagaagtg 179  Q
    |||||| |||||||||||||   |||| | ||||||||||||| || |||||||||||||||||    
T  12177164 caatcataagaatcaaaaggaaaagaagtgcaatcaatcagaataatcaaaagggggagaagtg 12177227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 322 - 396
Target Start/End: Original strand, 2072366 - 2072440
Alignment:
Q  322 agaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaattg 396  Q
    ||||||||||||||||| ||   |||||||||||||||||| | |||| | ||| |||| ||||||| |||||||    
T  2072366 agaaaccaaattgtgagtacataactcaccaaacaaccaaagtatgagcactcgactcatcaaacaatcaaattg 2072440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 322 - 396
Target Start/End: Original strand, 2075896 - 2075970
Alignment:
Q  322 agaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaattg 396  Q
    ||||||||||||||||| ||   |||||||||||||||||| | |||| | ||| |||  |||||||||||||||    
T  2075896 agaaaccaaattgtgagtacataactcaccaaacaaccaaagtatgagcactcgactcgtcaaacaaccaaattg 2075970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 123; Significance: 1e-62; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 320 - 551
Target Start/End: Complemental strand, 16870820 - 16870588
Alignment:
Q  320 gaagaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaattgaagaat--caaaaggggagaaga 417  Q
    |||||||||||||| |||||||||||||||| |||||||||||| || |||| | | ||||| || |||||||||||||||||  |||||||||||||||    
T  16870820 gaagaaaccaaattatgagcactcgactcacgaaacaaccaaat-gtaagaacttgactcactaatcaaccaaattgaagaatatcaaaaggggagaaga 16870722  T
Q  418 aaccaaattgtaagcacacgctcaccaaacaaccataatgtgagaactcgattcacccaacaagcaaattatgagtgctttacataccaaacaaacaaac 517  Q
    ||||||||||| |||||| |||||||||||||||| | |||||||| |||| ||||| |||||||||||||||||| ||| ||  ||||||||||||||     
T  16870721 aaccaaattgtgagcacatgctcaccaaacaaccaaagtgtgagaaatcgactcaccaaacaagcaaattatgagttcttgacccaccaaacaaacaaat 16870622  T
Q  518 aaacaaaccaattgtaagcgctattttgactcac 551  Q
     |||||||||||||| ||| ||||||||||||||    
T  16870621 gaacaaaccaattgtgagcactattttgactcac 16870588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 20 - 149
Target Start/End: Complemental strand, 16871385 - 16871262
Alignment:
Q  20 catccaaacaatagaaccattagagagaagcagtcatacataagatccagaaccaatagagtagtaaccaaagaatcatcaaaagcgggagaaatgcaat 119  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||      |||||||||| || |||||||||||||||||||| ||||||| ||||||    
T  16871385 catccaaacaatagaaccagtagagagaagcagccatacataaga------accaatagaggag-aaccaaagaatcatcaaaagtgggagaagtgcaat 16871293  T
Q  120 cagaagaatc-aaaagggggagaaatacaat 149  Q
     ||||||||| |||| |||||||| ||||||    
T  16871292 tagaagaatcaaaaaaggggagaagtacaat 16871262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 112 - 395
Target Start/End: Complemental strand, 16870955 - 16870652
Alignment:
Q  112 aatgcaatcagaagaatcaaaagggggagaaatacaatcaatcagaagaaccaaaag-ggggagaagtgc----------attagaagaaccaaaagggg 200  Q
    |||||||||||||||| ||| ||| |||||||| |||||||||||||||| ||||||  ||||||||| |          ||  |||||||||| | |||    
T  16870955 aatgcaatcagaagaaccaataggtggagaaatgcaatcaatcagaagaatcaaaagatgggagaagtacaatgcaatcaatcggaagaaccaaca-ggg 16870857  T
Q  201 gagaagcgcaatcaattaaaagaaccaaaagggggtagagaaaccaaattgtgagcactcaattc--------accaaacgtgagaactagactcaccaa 292  Q
    |||||| ||||||||| | |||||  |||| ||||   |||||||||||| ||||||||| | ||        |||||| || |||||| ||||||| ||    
T  16870856 gagaagtgcaatcaatgagaagaataaaaaaggggagaagaaaccaaattatgagcactcgactcacgaaacaaccaaatgtaagaacttgactcactaa 16870757  T
Q  293 acaaccaaattaaaga--atcagaagggg-gaagaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaac 389  Q
     |||||||||| ||||  |||| |||||| ||||||||||||||||||||||  | ||||||||||||||||| |||||||| ||| ||||||||||||     
T  16870756 tcaaccaaattgaagaatatcaaaaggggagaagaaaccaaattgtgagcacatg-ctcaccaaacaaccaaagtgtgagaaatcgactcaccaaacaag 16870658  T
Q  390 caaatt 395  Q
    ||||||    
T  16870657 caaatt 16870652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 356 - 426
Target Start/End: Complemental strand, 54147905 - 54147835
Alignment:
Q  356 aaccaaattgtgagaagtcggctcaccaaacaaccaaattgaagaatcaaaaggggagaagaaaccaaatt 426  Q
    |||||||||||||| | ||| |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  54147905 aaccaaattgtgagcactcgactcaccaaacaaccaacttgaagaatcaaaaggggagaagaaaccaaatt 54147835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 622 - 712
Target Start/End: Complemental strand, 16870332 - 16870242
Alignment:
Q  622 gaaccaagacaagctgaaccaaagtaagcaaaacagacatagacaaacaaccaattaaccatacacaaacacaatgaaacacacgaagact 712  Q
    |||||||||||| ||||||||||  || ||| | |||||||||| |||||||||||||||| |||||||||||| ||||| ||||||||||    
T  16870332 gaaccaagacaaactgaaccaaaacaaccaagaaagacatagacgaacaaccaattaaccaaacacaaacacaaagaaacgcacgaagact 16870242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 273 - 357
Target Start/End: Complemental strand, 54147896 - 54147811
Alignment:
Q  273 gtgagaactagactcaccaaacaaccaaattaaagaatcagaagggg-gaagaaaccaaattgtgagcactcgactcaccaaacaa 357  Q
    ||||| ||| |||||||||||||||||| || |||||||| |||||| |||||||||||||| |||||||||||| ||||||||||    
T  54147896 gtgagcactcgactcaccaaacaaccaacttgaagaatcaaaaggggagaagaaaccaaattatgagcactcgacccaccaaacaa 54147811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 305 - 389
Target Start/End: Complemental strand, 54147802 - 54147717
Alignment:
Q  305 aagaatcagaagggggaa-gaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaac 389  Q
    |||||||| ||||||||| |||||||||||||||||||   |||||||||||||||||| |||||||| | | |||||||||||||    
T  54147802 aagaatcaaaagggggaaagaaaccaaattgtgagcaccaaactcaccaaacaaccaaaatgtgagaactagactcaccaaacaac 54147717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 356 - 480
Target Start/End: Complemental strand, 54147843 - 54147718
Alignment:
Q  356 aaccaaattgtgagaagtcggctcaccaaacaaccaaattgaagaatcaaaaggggagaagaaaccaaattgtaagca-cacgctcaccaaacaaccata 454  Q
    ||||||||| |||| | ||| | |||||||||| |||   ||||||||||||||||  ||||||||||||||| |||| ||  ||||||||||||||| |    
T  54147843 aaccaaattatgagcactcgacccaccaaacaatcaatcagaagaatcaaaagggggaaagaaaccaaattgtgagcaccaaactcaccaaacaaccaaa 54147744  T
Q  455 atgtgagaactcgattcacccaacaa 480  Q
    ||||||||||| || ||||| |||||    
T  54147743 atgtgagaactagactcaccaaacaa 54147718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 305 - 361
Target Start/End: Complemental strand, 54147926 - 54147869
Alignment:
Q  305 aagaatcagaagggg-gaagaaaccaaattgtgagcactcgactcaccaaacaaccaa 361  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  54147926 aagaatcaaaaggggagaagaaaccaaattgtgagcactcgactcaccaaacaaccaa 54147869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 85 - 137
Target Start/End: Complemental strand, 54147964 - 54147912
Alignment:
Q  85 aaccaaagaatcatcaaaagcgggagaaatgcaatcagaagaatcaaaagggg 137  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  54147964 aaccaaagaatcatcaaaagtgggagaagtgcaatcagaagaatcaaaagggg 54147912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 326 - 393
Target Start/End: Complemental strand, 42265492 - 42265426
Alignment:
Q  326 accaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaa 393  Q
    ||||||||||||||||| || ||||||||||||||||||||||| | ||| |||||||||||||||||    
T  42265492 accaaattgtgagcacttgaatcaccaaacaaccaaattgtgag-actcgactcaccaaacaaccaaa 42265426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 181
Target Start/End: Complemental strand, 24225742 - 24225681
Alignment:
Q  120 cagaagaatcaaaagggggagaaatacaatcaatcagaagaaccaaaagggggagaagtgca 181  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||||| || | |||||||    
T  24225742 cagaagaatcaaaagggggagaaatgcaatcaatcagaagaatcaaaagaggaaaaagtgca 24225681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 396 - 452
Target Start/End: Complemental strand, 54147927 - 54147870
Alignment:
Q  396 gaagaatcaaaaggggagaagaaaccaaattgtaagcacacg-ctcaccaaacaacca 452  Q
    ||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||    
T  54147927 gaagaatcaaaaggggagaagaaaccaaattgtgagcactcgactcaccaaacaacca 54147870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 116 - 181
Target Start/End: Complemental strand, 16871172 - 16871105
Alignment:
Q  116 caatcagaagaatcaaaa--gggggagaaatacaatcaatcagaagaaccaaaagggggagaagtgca 181  Q
    |||||||| |||||||||  ||||||||| | ||||||||||||||||||||||| ||||||||||||    
T  16871172 caatcagacgaatcaaaaaagggggagaagtgcaatcaatcagaagaaccaaaagtgggagaagtgca 16871105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 181
Target Start/End: Complemental strand, 16871105 - 16871033
Alignment:
Q  112 aatgcaatcagaagaatcaaaag-ggggagaaatacaat-caatcagaagaaccaaaa-gggggagaagtgca 181  Q
    ||||||||||||||||||||||| |||||||| | |||| |||||||||||| ||||| ||||||||||||||    
T  16871105 aatgcaatcagaagaatcaaaaggggggagaagtgcaatgcaatcagaagaatcaaaaggggggagaagtgca 16871033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 325 - 369
Target Start/End: Complemental strand, 24225546 - 24225502
Alignment:
Q  325 aaccaaattgtgagcactcgactcaccaaacaaccaaattgtgag 369  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||    
T  24225546 aaccaaattgtaagcactcgattcaccaaacaaccaaattgtgag 24225502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 97 - 181
Target Start/End: Complemental strand, 24225735 - 24225647
Alignment:
Q  97 atcaaaagcgggagaaatgcaatca----gaagaatcaaaagggggagaaatacaatcaatcagaagaaccaaaagggggagaagtgca 181  Q
    |||||||| ||||||||||||||||    ||||||||||||| || | || | |||| ||||||||||| ||||| |||||||||||||    
T  24225735 atcaaaagggggagaaatgcaatcaatcagaagaatcaaaagaggaaaaagtgcaatgaatcagaagaatcaaaaaggggagaagtgca 24225647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 110; Significance: 5e-55; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 220 - 461
Target Start/End: Original strand, 1173283 - 1173535
Alignment:
Q  220 aagaaccaaaagggggtagagaaaccaaattgtgagcactcaattcaccaaac--------gtgagaactagactcaccaaacaaccaaattaaagaatc 311  Q
    ||||| ||||||||||   |||||||||||||||||||||| | |||| ||||        ||||||||||||||||||||||||||||||| || ||||    
T  1173283 aagaatcaaaagggggagaagaaaccaaattgtgagcactcgactcactaaacaatcaaatgtgagaactagactcaccaaacaaccaaattgaataatc 1173382  T
Q  312 agaagggg--gaagaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaattgaagaatcaaaagg 409  Q
    | ||||||  ||||||||||||||||| ||||| ||||||||||||||||||| |||||||| | | |||||||||||||||||||||||||||||||||    
T  1173383 aaaagggggagaagaaaccaaattgtgtgcactagactcaccaaacaaccaaa-tgtgagaattagactcaccaaacaaccaaattgaagaatcaaaagg 1173481  T
Q  410 g-gagaagaaaccaaattgtaagcac-acgctcaccaaacaaccataatgtgag 461  Q
    | |||||||||||||||||| ||||| |  ||||||||||||||| | ||||||    
T  1173482 gcgagaagaaaccaaattgtgagcactagactcaccaaacaaccaaagtgtgag 1173535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 404 - 551
Target Start/End: Complemental strand, 8986298 - 8986150
Alignment:
Q  404 aaaaggggagaa-gaaaccaaattgtaagcacacgctcaccaaacaaccataatgtgagaactcgattcacccaacaagcaaattatgagtgctttacat 502  Q
    |||||||||||| ||||||||||||| |||||| |||||||||||||||| | |||||||| |||| ||||| |||||||||||||||||| ||| ||      
T  8986298 aaaaggggagaaagaaaccaaattgtgagcacatgctcaccaaacaaccaaagtgtgagaaatcgactcaccaaacaagcaaattatgagttcttgaccc 8986199  T
Q  503 accaaacaaacaaacaaacaaaccaattgtaagcgctattttgactcac 551  Q
    ||||||||||||||  |||||||||||||| ||| ||||||||||||||    
T  8986198 accaaacaaacaaatgaacaaaccaattgtgagcactattttgactcac 8986150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 305 - 487
Target Start/End: Original strand, 1173283 - 1173467
Alignment:
Q  305 aagaatcagaaggggga--agaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaattgaagaat 402  Q
    |||||||| ||||||||  ||||||||||||||||||||||||||||| |||||| |||| |||||||| | | |||||||||||||||||||||| |||    
T  1173283 aagaatcaaaagggggagaagaaaccaaattgtgagcactcgactcactaaacaatcaaa-tgtgagaactagactcaccaaacaaccaaattgaataat 1173381  T
Q  403 caaaa-ggggagaagaaaccaaattgtaagcac-acgctcaccaaacaaccataatgtgagaactcgattcacccaacaagcaaatt 487  Q
    ||||| |||||||||||||||||||||  |||| |  ||||||||||||||| |||||||||| | || ||||| ||||| ||||||    
T  1173382 caaaagggggagaagaaaccaaattgtgtgcactagactcaccaaacaacca-aatgtgagaattagactcaccaaacaaccaaatt 1173467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 20 - 181
Target Start/End: Complemental strand, 8986661 - 8986502
Alignment:
Q  20 catccaaacaatagaaccattagagagaagcagtcatacataagatccagaaccaatagagtagtaaccaaagaatcatcaaaagcgggagaaatgcaat 119  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||      |||||||||| || |||||||||||||||||||| ||||||| ||||||    
T  8986661 catccaaacaatagaaccagtagagagaagcagccatacataaga------accaatagaggag-aaccaaagaatcatcaaaagtgggagaagtgcaat 8986569  T
Q  120 cagaagaatcaaaa---gggggagaaatacaat-caatcagaagaaccaaaa-gggggagaagtgca 181  Q
    ||||||||||||||   ||||||||| | |||| |||||||||||| ||||| ||||||||||||||    
T  8986568 cagaagaatcaaaaaaggggggagaagtgcaatgcaatcagaagaatcaaaaggggggagaagtgca 8986502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 99 - 212
Target Start/End: Complemental strand, 32290863 - 32290742
Alignment:
Q  99 caaaagcgggagaaatgcaatcagaagaatcaaaagggg-gagaaatacaatcaatcagaagaaccaaaa-gggggagaagtgc------attagaagaa 190  Q
    |||||| ||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||| |||| | |||||||||||      || |||||||    
T  32290863 caaaagtgggagaagtgcaatcagaagaatcaaaaggggagagaaatgcaatcaatcagaagaactaaaatgagggagaagtgcaatacaatcagaagaa 32290764  T
Q  191 ccaaaagggggagaagcgcaat 212  Q
    |||||||||||||||| |||||    
T  32290763 ccaaaagggggagaagtgcaat 32290742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 40 - 175
Target Start/End: Original strand, 1173133 - 1173268
Alignment:
Q  40 tagagagaagcagtcatacataagatccagaaccaatagagtagtaaccaaagaatcatcaaaagcgggagaaatgcaatcagaaga-----atcaaaag 134  Q
    |||||||||||||||||||| ||||      |||||||||| || |||||||||||||||||||| || |||| |||||||||||||     ||||||||    
T  1173133 tagagagaagcagtcatacaaaaga------accaatagaggagcaaccaaagaatcatcaaaagtggaagaagtgcaatcagaagaagaatatcaaaag 1173226  T
Q  135 -ggggagaaatacaatcaatcagaagaaccaaaagggggaga 175  Q
     |||||| ||| |||||||||||||||| ||| || ||||||    
T  1173227 tggggagcaatgcaatcaatcagaagaatcaacagagggaga 1173268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 116 - 181
Target Start/End: Original strand, 38583967 - 38584033
Alignment:
Q  116 caatcagaagaatcaaaagggggagaaatacaat-caatcagaagaaccaaaagggggagaagtgca 181  Q
    ||||||||||||||||||||| ||||||| |||| |||||||||||| |||||||||||||||||||    
T  38583967 caatcagaagaatcaaaagggcgagaaatgcaatgcaatcagaagaatcaaaagggggagaagtgca 38584033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 441 - 551
Target Start/End: Original strand, 38584195 - 38584301
Alignment:
Q  441 accaaacaaccataatgtgagaactcgattcacccaacaagcaaattatgagtgctttacataccaaacaaacaaacaaacaaaccaattgtaagcgcta 540  Q
    |||||||||||| |||||||| |||||| ||||| |||||||||||| ||||||| ||||  ||||||||||| |||||||   | |||||| ||| |||    
T  38584195 accaaacaaccaaaatgtgagcactcgactcaccaaacaagcaaattgtgagtgc-ttacccaccaaacaaacgaacaaac---caaattgtgagcacta 38584290  T
Q  541 ttttgactcac 551  Q
    |||||||||||    
T  38584291 ttttgactcac 38584301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 321 - 395
Target Start/End: Complemental strand, 8986287 - 8986214
Alignment:
Q  321 aagaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaatt 395  Q
    |||||||||||||||||||||  | ||||||||||||||||| |||||||| ||| |||||||||||| ||||||    
T  8986287 aagaaaccaaattgtgagcacatg-ctcaccaaacaaccaaagtgtgagaaatcgactcaccaaacaagcaaatt 8986214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 112 - 205
Target Start/End: Original strand, 38583998 - 38584102
Alignment:
Q  112 aatgcaatcagaagaatcaaaagggggagaa-----atacaatcaatcagaagaaccaaaagggggagaagtgc------attagaagaaccaaaagggg 200  Q
    |||||||||||||||||||||||||||||||     || |||||| |||||| || ||||||||||||||||||      |||||||||| |||||||||    
T  38583998 aatgcaatcagaagaatcaaaagggggagaagtgcaatgcaatcactcagaaaaatcaaaagggggagaagtgcgatgcaattagaagaatcaaaagggg 38584097  T
Q  201 gagaa 205  Q
    |||||    
T  38584098 gagaa 38584102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 8986424 - 8986368
Alignment:
Q  112 aatgcaatcagaagaatcaaaagggggagaaatacaatcaatcagaagaaccaaaag 168  Q
    |||||||||||||||| ||| |||||||||||| |||||||||||||||| ||||||    
T  8986424 aatgcaatcagaagaaccaatagggggagaaatgcaatcaatcagaagaatcaaaag 8986368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 116 - 212
Target Start/End: Original strand, 38583934 - 38584035
Alignment:
Q  116 caatcagaagaatcaaaagggggagaaatacaatcaatcagaagaaccaaaagggggagaagtgc------attagaagaaccaaaagggggagaagcgc 209  Q
    ||||||||||||||||| ||||||||| | |||||||||||||||| |||||||| ||||| |||      || ||||||| ||||||||||||||| ||    
T  38583934 caatcagaagaatcaaa-gggggagaagtgcaatcaatcagaagaatcaaaagggcgagaaatgcaatgcaatcagaagaatcaaaagggggagaagtgc 38584032  T
Q  210 aat 212  Q
    |||    
T  38584033 aat 38584035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 325 - 369
Target Start/End: Original strand, 38584202 - 38584246
Alignment:
Q  325 aaccaaattgtgagcactcgactcaccaaacaaccaaattgtgag 369  Q
    ||||||| ||||||||||||||||||||||||| |||||||||||    
T  38584202 aaccaaaatgtgagcactcgactcaccaaacaagcaaattgtgag 38584246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 333 - 395
Target Start/End: Original strand, 1173560 - 1173622
Alignment:
Q  333 tgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaatt 395  Q
    |||||||||| ||||||||||||||||||| | |||| | ||| |||||||||||| ||||||    
T  1173560 tgtgagcactagactcaccaaacaaccaaaatatgagtactcgactcaccaaacaaacaaatt 1173622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 181
Target Start/End: Complemental strand, 32290775 - 32290709
Alignment:
Q  116 caatcagaagaatcaaaagggggagaaatacaat-caatcagaagaaccaaaagggggagaagtgca 181  Q
    |||||||||||| |||||||||||||| | |||| |||||||||| |||||||  ||||||||||||    
T  32290775 caatcagaagaaccaaaagggggagaagtgcaatgcaatcagaaggaccaaaaatgggagaagtgca 32290709  T

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Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 305 - 396
Target Start/End: Original strand, 38584083 - 38584176
Alignment:
Q  305 aagaatcagaaggggga--agaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaattg 396  Q
    |||||||| ||||||||  | ||| ||||||||||||| |  ||||||||||||||||||||||||| | |   |||||||||| |||||||||    
T  38584083 aagaatcaaaagggggagaaaaaatcaaattgtgagcatttaactcaccaaacaaccaaattgtgagcacttaactcaccaaactaccaaattg 38584176  T

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Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 326 - 396
Target Start/End: Original strand, 38584168 - 38584242
Alignment:
Q  326 accaaattgtgagcactcgactcacca----aacaaccaaattgtgagaagtcggctcaccaaacaaccaaattg 396  Q
    ||||||||||||||||| |||||||||    |||||||||| |||||| | ||| |||||||||||| |||||||    
T  38584168 accaaattgtgagcacttgactcaccaaccaaacaaccaaaatgtgagcactcgactcaccaaacaagcaaattg 38584242  T

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Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 325 - 369
Target Start/End: Original strand, 38584136 - 38584180
Alignment:
Q  325 aaccaaattgtgagcactcgactcaccaaacaaccaaattgtgag 369  Q
    ||||||||||||||||||  ||||||||||| |||||||||||||    
T  38584136 aaccaaattgtgagcacttaactcaccaaactaccaaattgtgag 38584180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 438 - 492
Target Start/End: Original strand, 1173573 - 1173627
Alignment:
Q  438 ctcaccaaacaaccataatgtgagaactcgattcacccaacaagcaaattatgag 492  Q
    ||||||||||||||| ||| |||| |||||| ||||| ||||| |||||||||||    
T  1173573 ctcaccaaacaaccaaaatatgagtactcgactcaccaaacaaacaaattatgag 1173627  T

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Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 325 - 395
Target Start/End: Original strand, 1173583 - 1173653
Alignment:
Q  325 aaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaatt 395  Q
    ||||||| | |||| |||||||||||||||||| |||||| |||| | ||| | |||||||||| ||||||    
T  1173583 aaccaaaatatgagtactcgactcaccaaacaaacaaattatgagcactcgacccaccaaacaaacaaatt 1173653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 4e-37; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 320 - 492
Target Start/End: Original strand, 46691968 - 46692141
Alignment:
Q  320 gaagaaaccaaattgtgagcactcgactcacc-aaacaaccaaattgtgagaagtcggctcaccaaacaaccaaattgaagaatcaaaaggg-gagaaga 417  Q
    |||||||||||||||||| ||||||||||||| ||||||||||| |||||||| | | |||||||||| ||||||||||||||||||||||| |||||||    
T  46691968 gaagaaaccaaattgtgaacactcgactcaccaaaacaaccaaa-tgtgagaactagactcaccaaaccaccaaattgaagaatcaaaagggagagaaga 46692066  T
Q  418 aaccaaattgtaagcacacg-ctcaccaaacaaccataatgtgagaactcgattcacccaacaagcaaattatgag 492  Q
    ||||||||||| ||||| || ||||||||||||| | |||||||||| | || ||||| ||||| |||||| ||||    
T  46692067 aaccaaattgtgagcactcgactcaccaaacaacta-aatgtgagaattagactcaccaaacaaccaaattgtgag 46692141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 266 - 396
Target Start/End: Original strand, 46692006 - 46692137
Alignment:
Q  266 accaaacgtgagaactagactcaccaaacaaccaaattaaagaatcagaagg--gggaagaaaccaaattgtgagcactcgactcaccaaacaaccaaat 363  Q
    |||||| |||||||||||||||||||||| |||||||| |||||||| ||||  | ||||||||||||||||||||||||||||||||||||||| |||     
T  46692006 accaaatgtgagaactagactcaccaaaccaccaaattgaagaatcaaaagggagagaagaaaccaaattgtgagcactcgactcaccaaacaactaaa- 46692104  T
Q  364 tgtgagaagtcggctcaccaaacaaccaaattg 396  Q
    |||||||| | | ||||||||||||||||||||    
T  46692105 tgtgagaattagactcaccaaacaaccaaattg 46692137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 305 - 418
Target Start/End: Complemental strand, 42530824 - 42530711
Alignment:
Q  305 aagaatcagaagggg-gaagaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaattgaagaatc 403  Q
    |||||||| |||||| |||||||||||||||||||||| || ||||||||||||||||| |||||||| ||| ||||||||||||||||||| |||||||    
T  42530824 aagaatcaaaaggggagaagaaaccaaattgtgagcacacg-ctcaccaaacaaccaaagtgtgagaactcgactcaccaaacaaccaaattaaagaatc 42530726  T
Q  404 aaaaggggagaagaa 418  Q
    |||| ||||||||||    
T  42530725 aaaaagggagaagaa 42530711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 20 - 161
Target Start/End: Original strand, 46691818 - 46691955
Alignment:
Q  20 catccaaacaatagaaccattagagagaagcagtcatacataagatccagaaccaatagagtagtaaccaaagaatcatcaaaagcgggagaaatgcaat 119  Q
    ||||||||||||||||||| ||||||||||  ||||||||||| |   ||||||||||||| ||||||||||||||||||||||| ||||||| ||||||    
T  46691818 catccaaacaatagaaccaatagagagaag--gtcatacataata---agaaccaatagaggagtaaccaaagaatcatcaaaagtgggagaagtgcaat 46691912  T
Q  120 cagaagaatcaaaagggggagaaatacaat-caatcagaagaa 161  Q
    ||||||||| |||||||| | || | |||| ||||||||||||    
T  46691913 cagaagaattaaaaggggaaaaagtgcaatgcaatcagaagaa 46691955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 396 - 488
Target Start/End: Complemental strand, 42530825 - 42530733
Alignment:
Q  396 gaagaatcaaaaggggagaagaaaccaaattgtaagcacacgctcaccaaacaaccataatgtgagaactcgattcacccaacaagcaaatta 488  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||| ||||| ||||| |||||||    
T  42530825 gaagaatcaaaaggggagaagaaaccaaattgtgagcacacgctcaccaaacaaccaaagtgtgagaactcgactcaccaaacaaccaaatta 42530733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 20 - 142
Target Start/End: Complemental strand, 50296018 - 50295902
Alignment:
Q  20 catccaaacaatagaaccattagagagaagcagtcatacataagatccagaaccaatagagtagtaaccaaagaatcatcaaaagcgggagaaatgcaat 119  Q
    ||||||||||||||||||| || |||||||||| |||||||||||      |||||||||  ||||||||||||||||||||||| ||||||| ||||||    
T  50296018 catccaaacaatagaaccagtatagagaagcagccatacataaga------accaatagaagagtaaccaaagaatcatcaaaagtgggagaagtgcaat 50295925  T
Q  120 cagaagaatcaaaagggggagaa 142  Q
    ||||||||||||||| |||||||    
T  50295924 cagaagaatcaaaagagggagaa 50295902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 40 - 181
Target Start/End: Complemental strand, 42531090 - 42530947
Alignment:
Q  40 tagagagaagcagtcatacataagatccagaaccaatagagtagtaaccaaagaatcatcaaaagcgggagaaatgcaatcagaagaatcaaaag----- 134  Q
    ||||||||||||||||||||||| |      ||||||| || ||||||||||||||||| ||||| ||||||| |||||||||||||||||||||         
T  42531090 tagagagaagcagtcatacataaaa------accaatataggagtaaccaaagaatcattaaaagtgggagaagtgcaatcagaagaatcaaaagggggg 42530997  T
Q  135 --ggggagaaatacaatcaatcagaagaaccaaaag-ggggagaagtgca 181  Q
      |||| ||||| |||||||||||||||||| |||| || ||||||||||    
T  42530996 gtggggggaaatgcaatcaatcagaagaaccgaaagcggagagaagtgca 42530947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 626 - 712
Target Start/End: Complemental strand, 50295379 - 50295292
Alignment:
Q  626 caagacaagctgaaccaaagtaagcaaa-acagacatagacaaacaaccaattaaccatacacaaacacaatgaaacacacgaagact 712  Q
    |||||||||||||||||||| || || | |||||||||||||||||||||||||| || |||||||||||| ||||||||| ||||||    
T  50295379 caagacaagctgaaccaaagcaaccatagacagacatagacaaacaaccaattaatcaaacacaaacacaaagaaacacaccaagact 50295292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 112 - 312
Target Start/End: Complemental strand, 42530947 - 42530725
Alignment:
Q  112 aatgcaatcagaagaatcaaaaggggg-agaaatacaatcaatcagaagaaccaaaagggggagaag---------tgc-----attagaagaaccaaaa 196  Q
    ||||||||| ||| ||||||||||||| |||| | ||||||||||||||||||||||| ||||||||         |||     || ||||||| |||||    
T  42530947 aatgcaatctgaataatcaaaaggggggagaagtgcaatcaatcagaagaaccaaaagagggagaagtaagtgaaatgcaatcaatcagaagaatcaaaa 42530848  T
Q  197 gggggagaagcgcaatcaattaaaagaaccaaaagggggtagagaaaccaaattgtgagcactcaattcaccaaac---------gtgagaactagactc 287  Q
    |||| ||||| ||||||||| | ||||| |||||||||  | |||||||||||||||||||| |   |||||||||         ||||||||| |||||    
T  42530847 ggggaagaagtgcaatcaatcagaagaatcaaaaggggaga-agaaaccaaattgtgagcacac-gctcaccaaacaaccaaagtgtgagaactcgactc 42530750  T
Q  288 accaaacaaccaaattaaagaatca 312  Q
    |||||||||||||||||||||||||    
T  42530749 accaaacaaccaaattaaagaatca 42530725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 333 - 369
Target Start/End: Complemental strand, 50295586 - 50295550
Alignment:
Q  333 tgtgagcactcgactcaccaaacaaccaaattgtgag 369  Q
    |||||||||||||||||| ||||||||||||||||||    
T  50295586 tgtgagcactcgactcacgaaacaaccaaattgtgag 50295550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0499 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 332 - 369
Target Start/End: Original strand, 7304 - 7341
Alignment:
Q  332 ttgtgagcactcgactcaccaaacaaccaaattgtgag 369  Q
    |||||||||||||||||||||||||||||| |||||||    
T  7304 ttgtgagcactcgactcaccaaacaaccaatttgtgag 7341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 341 - 371
Target Start/End: Original strand, 154938 - 154968
Alignment:
Q  341 ctcgactcaccaaacaaccaaattgtgagaa 371  Q
    |||||||||||||||||||||||||||||||    
T  154938 ctcgactcaccaaacaaccaaattgtgagaa 154968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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