View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9738_low_13 (Length: 240)
Name: NF9738_low_13
Description: NF9738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9738_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 14271730 - 14271952
Alignment:
| Q |
1 |
tgttcctgcagcctcggatatttcagttgtttgtcctatgaattttagaacggatccggcgaagatgtataaaaggcatagtggaaatgccatggaaaat |
100 |
Q |
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| T |
14271730 |
tgttcctgcggcctcggatatttcagttgtttgtcctatgaattttagaatggatccggcgaagatgtataaaaggcatagtggaaatgccatggaaaat |
14271829 |
T |
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| Q |
101 |
agtatcacccatgatctttgcatgtatattcctaacatgtcgagttttccagctcctactgcttgtccacatagtgtttcgagcgcgcttcccatcccaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14271830 |
agtatcacccatgatctttgcatgtatattcctaacatgtcgagttttcctgctcctactgcttgtccacatagtgtttcgagcgcgcttcccatcccaa |
14271929 |
T |
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| Q |
201 |
gctgtttgaaaatcaaatcaagg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
14271930 |
gctgtttgaaaatcaaatcaagg |
14271952 |
T |
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Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 104 - 198
Target Start/End: Original strand, 29112155 - 29112249
Alignment:
| Q |
104 |
atcacccatgatctttgcatgtatattcctaacatgtcgagttttccagctcctactgcttgtccacatagtgtttcgagcgcgcttcccatccc |
198 |
Q |
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|||| ||||||||||||||||||||||||||||||||| ||||| || ||||| | ||||||||||||||||| || | |||||||||||||| |
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| T |
29112155 |
atcaaccatgatctttgcatgtatattcctaacatgtctagtttccctgctccgaaagcttgtccacatagtgtctccaatgcgcttcccatccc |
29112249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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