View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9738_low_2 (Length: 717)
Name: NF9738_low_2
Description: NF9738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9738_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 152 - 624
Target Start/End: Original strand, 2017625 - 2018104
Alignment:
| Q |
152 |
cacaataagcgttcttaacaaaatgcatgcatgcaccatattaatctcgtcgaggcagatcatcatcatcaaccattgatttcgcggaatgtgaatggnn |
251 |
Q |
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| T |
2017625 |
cacaataagcgttcttaacaaaatgcatgcatgcaccatattaatcgcgtcgcggcagatcatcatcatcaaccattgatttcgcggaatgtgaatgaaa |
2017724 |
T |
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| Q |
252 |
nnnnnnntgtgttggaactgagaatgtttttgttatattttgagatacaaaatgttaatatttgatgaacaaataatttcgtaatttagggatgaaatgt |
351 |
Q |
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| T |
2017725 |
aaaaaaaagtgttggaactgagaatgtttttgttatattttgagatacaaaatgttaatatttgaggaagaaataatttcgtaatttagggatgaaatgt |
2017824 |
T |
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| Q |
352 |
gagttttgtgacaaagtgttgtcattcaatgttgtctaaggcgga-------atatagccgatggttaaaaatcatctatacaaacacgccattgcagtc |
444 |
Q |
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| T |
2017825 |
gagttttgtgacaaagtgttgtcaatcaatgttgtctatggcggatggcagaatatagccgatggttaaaaatcctctatacaaacacgccattgcagcc |
2017924 |
T |
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| Q |
445 |
tatggcactgcgatgatgggcattccttcacaaatgcc-gccatggtggtgccaagaccaccatttagtaacactgttgtcaaaaagcgggttatagtgg |
543 |
Q |
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| T |
2017925 |
tatgacactgcgatgatgggcattccttcccaaatgcccgccatggtggtgccacgaccaccatttagtaacactgttgtcaaaaagcgg-ttatagtgg |
2018023 |
T |
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| Q |
544 |
cgctatggcagtgcagcgtaaagggatttatgattgataacattgattttagatgatttatacatattcgtattatataat |
624 |
Q |
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| T |
2018024 |
cgctatgacagtgcagcgtaaagggatttgtgattgataacattgattttagatgatttatacatatttgtgttatataat |
2018104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 34 - 157
Target Start/End: Original strand, 2017191 - 2017324
Alignment:
| Q |
34 |
agcacagaactcaactttcctaaaaacgtcgccggag----------ttgatcatcggccgccaagaactctccatccaggttattctctatcatttttt |
123 |
Q |
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| T |
2017191 |
agcacagaactcaacttccctgaaaacgtcgccggagcacgacgtagttgatcatcggacgccaagaactctccatccaggttattgtctatcatttttt |
2017290 |
T |
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| Q |
124 |
cggattcaattccaccgcaaattgcggccacaat |
157 |
Q |
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| T |
2017291 |
cggattcaattccaccgcaaattgcgggcacaat |
2017324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 640 - 711
Target Start/End: Original strand, 2035535 - 2035607
Alignment:
| Q |
640 |
tatatatgtccctttcatgtttcttt-cagaattggctttgattgaattgttctttttctggtgcttcagata |
711 |
Q |
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| T |
2035535 |
tatatatgtccctttcatgtttcttttcagaattggctttgattggattgttctttttctggtgcttcagata |
2035607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 481 - 549
Target Start/End: Original strand, 2020460 - 2020527
Alignment:
| Q |
481 |
ccgccatggtggtgccaagaccaccatttagtaacactgttgtcaaaaagcgggttatagtggcgctat |
549 |
Q |
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| T |
2020460 |
ccgccatggtggtgccatgaccaccatttagtaacactgctgtcaaaaagc-ggttatagtggcactat |
2020527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 638 - 711
Target Start/End: Original strand, 2020705 - 2020780
Alignment:
| Q |
638 |
catatatatgtccctttcatgtttc-tttcagaattggc-tttgattgaattgttctttttctggtgcttcagata |
711 |
Q |
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| T |
2020705 |
catatatatgtccctttcatgtttcttttcagaattggcttttgattggattgttctatttttggtgtttcagata |
2020780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 391 - 479
Target Start/End: Original strand, 2020346 - 2020434
Alignment:
| Q |
391 |
ggcggaatatagccgatggttaaaaatcatctatacaaacacgccattgcagtctatggcactgcgatgatgggcattccttcacaaat |
479 |
Q |
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| T |
2020346 |
ggcggagtatagctgatggttaaaaatccgctatataaacaagccattgcagcctatggcaccgtgacgacaggcattccttcacaaat |
2020434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 670 - 717
Target Start/End: Original strand, 2018177 - 2018224
Alignment:
| Q |
670 |
attggctttgattgaattgttctttttctggtgcttcagatattttgg |
717 |
Q |
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| T |
2018177 |
attggctttgattggaatgttctttttctggtgcttcagatactttgg |
2018224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 270 - 316
Target Start/End: Original strand, 2020115 - 2020161
Alignment:
| Q |
270 |
tgagaatgtttttgttatattttgagatacaaaatgttaatatttga |
316 |
Q |
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| T |
2020115 |
tgagaatgtttttgttatattttggggtaaaaaatgttaatatttga |
2020161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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