View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9738_low_3 (Length: 565)

Name: NF9738_low_3
Description: NF9738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9738_low_3
NF9738_low_3
[»] chr7 (6 HSPs)
chr7 (20-298)||(38144368-38144642)
chr7 (363-399)||(42276092-42276128)
chr7 (363-399)||(27331061-27331097)
chr7 (363-399)||(33212043-33212079)
chr7 (363-399)||(42598242-42598278)
chr7 (363-399)||(44496837-44496873)
[»] chr8 (2 HSPs)
chr8 (363-399)||(34494672-34494708)
chr8 (363-399)||(31806300-31806336)
[»] chr1 (5 HSPs)
chr1 (367-399)||(740994-741026)
chr1 (363-399)||(45042262-45042298)
chr1 (363-399)||(1689392-1689428)
chr1 (367-399)||(15182621-15182653)
chr1 (181-297)||(41316338-41316454)
[»] chr4 (8 HSPs)
chr4 (352-399)||(40755922-40755968)
chr4 (364-397)||(23758353-23758386)
chr4 (363-399)||(9472547-9472583)
chr4 (367-399)||(12241059-12241091)
chr4 (367-399)||(33820374-33820406)
chr4 (363-399)||(43608077-43608113)
chr4 (363-399)||(53357111-53357147)
chr4 (363-399)||(53662462-53662498)
[»] chr3 (6 HSPs)
chr3 (363-401)||(45657804-45657842)
chr3 (352-397)||(30251004-30251048)
chr3 (363-399)||(12094423-12094459)
chr3 (367-399)||(40159876-40159908)
chr3 (363-399)||(48179087-48179123)
chr3 (363-399)||(49761220-49761256)
[»] chr6 (1 HSPs)
chr6 (363-399)||(16352183-16352219)
[»] chr5 (5 HSPs)
chr5 (363-399)||(2456027-2456063)
chr5 (363-399)||(5996668-5996704)
chr5 (363-399)||(6529020-6529056)
chr5 (363-399)||(13547268-13547304)
chr5 (363-399)||(36416096-36416132)
[»] chr2 (5 HSPs)
chr2 (363-399)||(1876321-1876357)
chr2 (367-399)||(16754397-16754429)
chr2 (363-399)||(17159567-17159603)
chr2 (367-399)||(28277805-28277837)
chr2 (363-399)||(34372848-34372884)


Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-131; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 20 - 298
Target Start/End: Original strand, 38144368 - 38144642
Alignment:
Q  20 ttatagcatttggaaagcaacccttagctttaattttttatagcaaagcagatgcttttacaaccaaaccttcttaacaaagacaactcatcatattttt 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||    
T  38144368 ttatagcatttggaaagcaacccttagctttaattttttatagcaaagcagatgcttttacaaccaaaccttcttaacaaagaccactgatcatatattt 38144467  T
Q  120 ataagtaacaacatctacattgtatcctctaatcaaaagatccttaaaaatttgttgtgcatgcatccttaagtcttccccctttggacaaaccatcaat 219  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    |||||||||||||||||||||||| ||||||||||||||    
T  38144468 ataagtaacaacatctacattgtatcctttaatcaaaagatccttaaaaatttgttg----tgcatccttaagtcttccccctttagacaaaccatcaat 38144563  T
Q  220 aagcatactacatgtgtacaaatccacctgaatgccttggttatgaatttcattgactaatgcaattgccttatcaagt 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  38144564 aagcatactacatgtgtacaaatccacctgaatgccttggttatgaatttccttgactaatgcaattgccttatcaagt 38144642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 399
Target Start/End: Complemental strand, 42276128 - 42276092
Alignment:
Q  363 aaaattgttagaaaatagttgtataaatatcatttct 399  Q
    ||||||||||||||||||||||| |||||||||||||    
T  42276128 aaaattgttagaaaatagttgtacaaatatcatttct 42276092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 363 - 399
Target Start/End: Original strand, 27331061 - 27331097
Alignment:
Q  363 aaaattgttagaaaatagttgtataaatatcatttct 399  Q
    |||||||||||||||||||| || |||||||||||||    
T  27331061 aaaattgttagaaaatagttatacaaatatcatttct 27331097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 363 - 399
Target Start/End: Complemental strand, 33212079 - 33212043
Alignment:
Q  363 aaaattgttagaaaatagttgtataaatatcatttct 399  Q
    |||||||||||||||| |||||| |||||||||||||    
T  33212079 aaaattgttagaaaatggttgtacaaatatcatttct 33212043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 363 - 399
Target Start/End: Original strand, 42598242 - 42598278
Alignment:
Q  363 aaaattgttagaaaatagttgtataaatatcatttct 399  Q
    |||||||||| |||||||||||| |||||||||||||    
T  42598242 aaaattgttaaaaaatagttgtacaaatatcatttct 42598278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 363 - 399
Target Start/End: Original strand, 44496837 - 44496873
Alignment:
Q  363 aaaattgttagaaaatagttgtataaatatcatttct 399  Q
    |||||||||||||||||||| || |||||||||||||    
T  44496837 aaaattgttagaaaatagttatacaaatatcatttct 44496873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 399
Target Start/End: Original strand, 34494672 - 34494708
Alignment:
Q  363 aaaattgttagaaaatagttgtataaatatcatttct 399  Q
    ||||||||||||||||||||||| |||||||||||||    
T  34494672 aaaattgttagaaaatagttgtacaaatatcatttct 34494708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 363 - 399
Target Start/End: Complemental strand, 31806336 - 31806300
Alignment:
Q  363 aaaattgttagaaaatagttgtataaatatcatttct 399  Q
    |||||||||||||||| |||||| |||||||||||||    
T  31806336 aaaattgttagaaaatggttgtacaaatatcatttct 31806300  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 367 - 399
Target Start/End: Original strand, 740994 - 741026
Alignment:
Q  367 ttgttagaaaatagttgtataaatatcatttct 399  Q
    |||||||||||||||||||||||||||||||||    
T  740994 ttgttagaaaatagttgtataaatatcatttct 741026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 399
Target Start/End: Complemental strand, 45042298 - 45042262
Alignment:
Q  363 aaaattgttagaaaatagttgtataaatatcatttct 399  Q
    ||||||||||||||||||||||| |||||||||||||    
T  45042298 aaaattgttagaaaatagttgtacaaatatcatttct 45042262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 363 - 399
Target Start/End: Complemental strand, 1689428 - 1689392
Alignment:
Q  363 aaaattgttagaaaatagttgtataaatatcatttct 399  Q
    |||||||||| |||||||||||| |||||||||||||    
T  1689428 aaaattgttataaaatagttgtacaaatatcatttct 1689392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 367 - 399
Target Start/End: Original strand, 15182621 - 15182653
Alignment:
Q  367 ttgttagaaaatagttgtataaatatcatttct 399  Q
    ||||||||||||||||||| |||||||||||||    
T  15182621 ttgttagaaaatagttgtacaaatatcatttct 15182653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 181 - 297
Target Start/End: Complemental strand, 41316454 - 41316338
Alignment:
Q  181 tgcatccttaagtcttccccctttggacaaaccatcaataagcatactacatgtgtacaaatccacctgaatgccttggttatgaatttcattgactaat 280  Q
    ||||| |||||||||||| | |||| | || ||||||||||| ||| |  ||||||||| ||||   |||||||||||||  | |||||  || ||||||    
T  41316454 tgcattcttaagtcttcctcatttgcataacccatcaataagtatattggatgtgtacatatccgattgaatgccttggtctttaattttcttcactaat 41316355  T
Q  281 gcaattgccttatcaag 297  Q
    ||||| ||||| |||||    
T  41316354 gcaatagccttgtcaag 41316338  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 399
Target Start/End: Complemental strand, 40755968 - 40755922
Alignment:
Q  352 aaattatcaacaaaattgttagaaaatagttgtataaatatcatttct 399  Q
    |||||||||| |||||||||||||||| |||||| |||||||||||||    
T  40755968 aaattatcaa-aaaattgttagaaaatggttgtacaaatatcatttct 40755922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 397
Target Start/End: Original strand, 23758353 - 23758386
Alignment:
Q  364 aaattgttagaaaatagttgtataaatatcattt 397  Q
    ||||||||| ||||||||||||||||||||||||    
T  23758353 aaattgttaaaaaatagttgtataaatatcattt 23758386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 363 - 399
Target Start/End: Original strand, 9472547 - 9472583
Alignment:
Q  363 aaaattgttagaaaatagttgtataaatatcatttct 399  Q
    |||||| |||||||||||||||| |||||||||||||    
T  9472547 aaaattattagaaaatagttgtacaaatatcatttct 9472583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 367 - 399
Target Start/End: Complemental strand, 12241091 - 12241059
Alignment:
Q  367 ttgttagaaaatagttgtataaatatcatttct 399  Q
    ||||||||||||||||||| |||||||||||||    
T  12241091 ttgttagaaaatagttgtacaaatatcatttct 12241059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 367 - 399
Target Start/End: Original strand, 33820374 - 33820406
Alignment:
Q  367 ttgttagaaaatagttgtataaatatcatttct 399  Q
    ||||||||||||||||||| |||||||||||||    
T  33820374 ttgttagaaaatagttgtacaaatatcatttct 33820406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 363 - 399
Target Start/End: Original strand, 43608077 - 43608113
Alignment:
Q  363 aaaattgttagaaaatagttgtataaatatcatttct 399  Q
    |||||||| |||||||| |||||||||||||||||||    
T  43608077 aaaattgtgagaaaatacttgtataaatatcatttct 43608113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 363 - 399
Target Start/End: Original strand, 53357111 - 53357147
Alignment:
Q  363 aaaattgttagaaaatagttgtataaatatcatttct 399  Q
    |||||||||||||||||||| || |||||||||||||    
T  53357111 aaaattgttagaaaatagttatacaaatatcatttct 53357147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 363 - 399
Target Start/End: Original strand, 53662462 - 53662498
Alignment:
Q  363 aaaattgttagaaaatagttgtataaatatcatttct 399  Q
    |||||||||| |||||||||||| |||||||||||||    
T  53662462 aaaattgttacaaaatagttgtacaaatatcatttct 53662498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 363 - 401
Target Start/End: Original strand, 45657804 - 45657842
Alignment:
Q  363 aaaattgttagaaaatagttgtataaatatcatttctat 401  Q
    ||||||||||||||||  |||||||||||||||||||||    
T  45657804 aaaattgttagaaaatgattgtataaatatcatttctat 45657842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 397
Target Start/End: Original strand, 30251004 - 30251048
Alignment:
Q  352 aaattatcaacaaaattgttagaaaatagttgtataaatatcattt 397  Q
    |||||||||| |||||||||||||||| |||||| |||||||||||    
T  30251004 aaattatcaa-aaaattgttagaaaatggttgtacaaatatcattt 30251048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 363 - 399
Target Start/End: Original strand, 12094423 - 12094459
Alignment:
Q  363 aaaattgttagaaaatagttgtataaatatcatttct 399  Q
    |||||||| | ||||||||||||||||||||||||||    
T  12094423 aaaattgtcataaaatagttgtataaatatcatttct 12094459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 367 - 399
Target Start/End: Original strand, 40159876 - 40159908
Alignment:
Q  367 ttgttagaaaatagttgtataaatatcatttct 399  Q
    ||||||||||||||||||| |||||||||||||    
T  40159876 ttgttagaaaatagttgtacaaatatcatttct 40159908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 363 - 399
Target Start/End: Original strand, 48179087 - 48179123
Alignment:
Q  363 aaaattgttagaaaatagttgtataaatatcatttct 399  Q
    |||| |||||||||||||||||| |||||||||||||    
T  48179087 aaaactgttagaaaatagttgtacaaatatcatttct 48179123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 363 - 399
Target Start/End: Original strand, 49761220 - 49761256
Alignment:
Q  363 aaaattgttagaaaatagttgtataaatatcatttct 399  Q
    |||||||||||||||| |||||| |||||||||||||    
T  49761220 aaaattgttagaaaatggttgtacaaatatcatttct 49761256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 363 - 399
Target Start/End: Original strand, 16352183 - 16352219
Alignment:
Q  363 aaaattgttagaaaatagttgtataaatatcatttct 399  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  16352183 aaaattgttataaaatggttgtataaatatcatttct 16352219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 363 - 399
Target Start/End: Complemental strand, 2456063 - 2456027
Alignment:
Q  363 aaaattgttagaaaatagttgtataaatatcatttct 399  Q
    |||||||||| |||||||||||||| |||||||||||    
T  2456063 aaaattgttataaaatagttgtatagatatcatttct 2456027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 363 - 399
Target Start/End: Complemental strand, 5996704 - 5996668
Alignment:
Q  363 aaaattgttagaaaatagttgtataaatatcatttct 399  Q
    |||||||||| |||||||||||| |||||||||||||    
T  5996704 aaaattgttaaaaaatagttgtacaaatatcatttct 5996668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 363 - 399
Target Start/End: Complemental strand, 6529056 - 6529020
Alignment:
Q  363 aaaattgttagaaaatagttgtataaatatcatttct 399  Q
    ||||||||||||||||| ||||| |||||||||||||    
T  6529056 aaaattgttagaaaataattgtacaaatatcatttct 6529020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 363 - 399
Target Start/End: Original strand, 13547268 - 13547304
Alignment:
Q  363 aaaattgttagaaaatagttgtataaatatcatttct 399  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  13547268 aaaattgttacaaaatagttgtatgaatatcatttct 13547304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 363 - 399
Target Start/End: Original strand, 36416096 - 36416132
Alignment:
Q  363 aaaattgttagaaaatagttgtataaatatcatttct 399  Q
    |||||||||||||||| |||||| |||||||||||||    
T  36416096 aaaattgttagaaaatggttgtacaaatatcatttct 36416132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 363 - 399
Target Start/End: Original strand, 1876321 - 1876357
Alignment:
Q  363 aaaattgttagaaaatagttgtataaatatcatttct 399  Q
    |||||||| | ||||||||||||||||||||||||||    
T  1876321 aaaattgtgaaaaaatagttgtataaatatcatttct 1876357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 367 - 399
Target Start/End: Complemental strand, 16754429 - 16754397
Alignment:
Q  367 ttgttagaaaatagttgtataaatatcatttct 399  Q
    |||||||||||| ||||||||||||||||||||    
T  16754429 ttgttagaaaattgttgtataaatatcatttct 16754397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 363 - 399
Target Start/End: Complemental strand, 17159603 - 17159567
Alignment:
Q  363 aaaattgttagaaaatagttgtataaatatcatttct 399  Q
    |||||||||| |||||||||||| |||||||||||||    
T  17159603 aaaattgttaaaaaatagttgtacaaatatcatttct 17159567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 367 - 399
Target Start/End: Original strand, 28277805 - 28277837
Alignment:
Q  367 ttgttagaaaatagttgtataaatatcatttct 399  Q
    |||| ||||||||||||||||||||||||||||    
T  28277805 ttgtcagaaaatagttgtataaatatcatttct 28277837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 363 - 399
Target Start/End: Complemental strand, 34372884 - 34372848
Alignment:
Q  363 aaaattgttagaaaatagttgtataaatatcatttct 399  Q
    ||||||||||||||||| ||||| |||||||||||||    
T  34372884 aaaattgttagaaaataattgtagaaatatcatttct 34372848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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