View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9738_low_4 (Length: 405)
Name: NF9738_low_4
Description: NF9738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9738_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 17 - 399
Target Start/End: Original strand, 513611 - 513987
Alignment:
| Q |
17 |
atcaacaggaaaaccatcatcattcaataatgtttcctttttatcacttagttgggcagaactttgagtagttctaaannnnnnngtttgggggaatggc |
116 |
Q |
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| T |
513611 |
atcaacaggaaaaccatcaccattcaataatgtttcctttttatcacttagttgggcagaactttgagtagttctaaatttttttgtttgggggaatggc |
513710 |
T |
|
| Q |
117 |
gtcggagcaggtttgtgagaaataagctcaacccaccacgggttgacacgtcttggaatttgcgagacttgaaattcatcccaattaacctacgatatac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
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| T |
513711 |
gtcggagcaggtttgtgagaaataagctcaacccaccacgggttgacacgtcttggaatttgcgagacttgaaattcatcccaattaacctaagatattc |
513810 |
T |
|
| Q |
217 |
aaataaaaaatggtaagaatgtaatattgatcagttgcaatatgcgataaattatagaatacaagattaaacccaaaaccattagccacaatgcaccact |
316 |
Q |
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| T |
513811 |
aaataaaaaatggtaagaatg-----ttgatcagttgcaatatgtgataaattatagaatacaagattaaacccaaaaccattagccacaatgcaccact |
513905 |
T |
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| Q |
317 |
gttcaaataaagtctaaattgtcattaaaaaatatataatttctaaattccctaaccttaaaatctatctcatatgacagaag |
399 |
Q |
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| T |
513906 |
gttcaaataaagtctaaattgtcattaaaaaa-gtataatttctaaattccctaaccttaaaatctatcttatatgacagaag |
513987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 17 - 380
Target Start/End: Complemental strand, 563526 - 563167
Alignment:
| Q |
17 |
atcaacaggaaaaccatcatcattcaataatgtttcctttttatcacttagttgggcagaactttgagtagttctaaannnnnnngtttgggggaatggc |
116 |
Q |
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| T |
563526 |
atcaacaggaaaaccatcatcattcaataatgtttcctttttatcacttagttgggcagaactttgagtagttctaaatttttttgtttgggggaatggc |
563427 |
T |
|
| Q |
117 |
gtcggagcaggtttgtgagaaataagctcaacccaccacgggttgacacgtcttggaatttgcgagacttgaaattcatcccaattaacctacgatata- |
215 |
Q |
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|||||||||||||||||| |||||||| ||||||||| |||| ||||||| ||||||||||| |||||||||||||||||||||||| ||| || |
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| T |
563426 |
gtcggagcaggtttgtga------agctcaacgcaccacgggctgactcgtcttgaaatttgcgagatttgaaattcatcccaattaacctatgatgtat |
563333 |
T |
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| Q |
216 |
-caaataaaaaatggtaagaatgtaatattgatcagttgcaatatgcgataaattatagaatacaagattaaacccaaaaccattagccacaatgcacca |
314 |
Q |
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||||||||||||||||||||| ||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||| | ||||||| |
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| T |
563332 |
tcaaataaaaaatggtaagaatacaatattgatcatttgcaatatgtgataaattattgaatacaagattaaacccaaaaccattagccagagtgcacca |
563233 |
T |
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| Q |
315 |
ctgttcaaataaagtctaaattgtcattaaaaaatatataatttctaaattccctaaccttaaaat |
380 |
Q |
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|||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
563232 |
ttgttcaaataaagtttaaattgtcattaaaaaatgtataatttataaattccctaaccttaaaat |
563167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 135 - 214
Target Start/End: Complemental strand, 566687 - 566608
Alignment:
| Q |
135 |
gaaataagctcaacccaccacgggttgacacgtcttggaatttgcgagacttgaaattcatcccaattaacctacgatat |
214 |
Q |
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|||||||| |||||||||||| ||| |||||||||||||| |||||||||||||||||||| |||||||| ||||| |
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| T |
566687 |
gaaataagttcaacccaccacataccgactcgtcttggaatttgtgagacttgaaattcatcccagttaacctatgatat |
566608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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