View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9739_low_1 (Length: 523)
Name: NF9739_low_1
Description: NF9739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9739_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-128; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 252 - 496
Target Start/End: Complemental strand, 16003858 - 16003614
Alignment:
| Q |
252 |
caaacgtaaacaccctcttcttcttttgttctctagctgtctttttcccatgcttttctatagctcttaccaccataaacatggttctgttcttgcaaga |
351 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16003858 |
caaacgtaaacaccctcttcttcttttattctctagctgtctttttcccatgcttttctatagctcttaccaccataaacatggttctgttcttgcaaga |
16003759 |
T |
|
| Q |
352 |
tccatcacaaaatagaggtagttttagattttatattgatttccttccaattctcaaaattaaagacctttgttgttgatcaaatattcaccctggttcc |
451 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16003758 |
tccatcacaaaatagaggtagttttagattttatattgatttcctttcaattctcaaaattaaagacctttgttgttgatcaaatattcaccctggttcc |
16003659 |
T |
|
| Q |
452 |
attttcctccacaagtcgagtcataccgctatttctgtgctcctc |
496 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
16003658 |
attttcctccacaagtcgagtcataccgctatttctgtgttcctc |
16003614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 252 - 496
Target Start/End: Complemental strand, 26795241 - 26794994
Alignment:
| Q |
252 |
caaacgtaaacaccctcttcttctt---ttgttctctagctgtctttttcccatgcttttctatagctcttaccaccataaacatggttctgttcttgca |
348 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
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| T |
26795241 |
caaacgtaaacaccctcttcttcttcttttgttctctagctgtctttttcccatgcttttctacagctgttaccaccataaacatggttctgttcttgca |
26795142 |
T |
|
| Q |
349 |
agatccatcacaaaatagaggtagttttagattttatattgatttccttccaattctcaaaattaaagacctttgttgttgatcaaatattcaccctggt |
448 |
Q |
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| T |
26795141 |
agatccatcacaaaatagaggtagttttagattctatattgatttccttccaattctcaaaattaaagacctttgttgttgatcaaatattcaccctagt |
26795042 |
T |
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| Q |
449 |
tccattttcctccacaagtcgagtcataccgctatttctgtgctcctc |
496 |
Q |
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||| ||||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
26795041 |
tccgttttcctccacaagtcgagtcataccgctatttatgtgttcctc |
26794994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 59 - 254
Target Start/End: Complemental strand, 16004601 - 16004408
Alignment:
| Q |
59 |
tatgagtttttgtgctgaggatatatgcatgatgctttattgtaatattgatgtataagaattttcatgtacgcaacataagtacatagcataaaatgtc |
158 |
Q |
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| T |
16004601 |
tatgagtttttgtgctgaggatatatgcatgatgctttattgtaatattgatgtataaaaattttcatgtacacaacataagtacataacataaaatgtc |
16004502 |
T |
|
| Q |
159 |
ttcttctttttcctttcnnnnnnnnnnnnnnntaacatttcttcttaacaaacctttctacaaactgcgcacataagagaaggaaagtgtctgcaa |
254 |
Q |
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| T |
16004501 |
ttcttctttttcctttcaaaaaaattaaaaaataacatgtcttcttgacaaacctttctacaaact--gcacataaaagaagaaaagtgtctgcaa |
16004408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 16004745 - 16004683
Alignment:
| Q |
1 |
gttgcttccaactacaatcaaactcaattcatgaaatatttgaatgttacagcttaaatatga |
63 |
Q |
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| T |
16004745 |
gttgcttccaactacaatcaaactcaattcatgaaatatttgaatgttacagcttaaatatga |
16004683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 252 - 486
Target Start/End: Complemental strand, 40722202 - 40721968
Alignment:
| Q |
252 |
caaacgtaaacaccctcttcttcttttgttctctagctgtctttttcccatgcttttctatagctcttaccaccataaacatggttctgttcttgcaaga |
351 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
40722202 |
caaacgtaaacaccctcttcttcttttgttctctagctgtctttttcccatgcttttctatagctcttaccaccataaacatggttatgttcttgcaaga |
40722103 |
T |
|
| Q |
352 |
tccatcacaaaatagaggtagttttagattttatattgatttccttccaattctcaaaattaaagacctttgttgttgatcaaatattcaccctggttcc |
451 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
40722102 |
tccatcacaaaatagaggtagttttagattttatattgatttccttccaattctcaaaattaaagacctttgttgttgatcaaatattcaccctggtttc |
40722003 |
T |
|
| Q |
452 |
attttcctccacaagtcgagtcataccgctatttc |
486 |
Q |
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|||||| | ||||||||||||||||||||||||| |
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| T |
40722002 |
gttttccacgacaagtcgagtcataccgctatttc |
40721968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 164; Significance: 2e-87; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 252 - 435
Target Start/End: Original strand, 27221880 - 27222063
Alignment:
| Q |
252 |
caaacgtaaacaccctcttcttcttttgttctctagctgtctttttcccatgcttttctatagctcttaccaccataaacatggttctgttcttgcaaga |
351 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |
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| T |
27221880 |
caaacgtaaacaacctcttcttcttttgttctctagctgtctttttcccatgcttttctgcagctcttaccaccataaatatggttctgttcttgcaaga |
27221979 |
T |
|
| Q |
352 |
tccatcacaaaatagaggtagttttagattttatattgatttccttccaattctcaaaattaaagacctttgttgttgatcaaa |
435 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27221980 |
tccatcacaaaatagaggtagttttagattctatattgatttccttccaattctcaaaattaaagacctttgttgttgatcaaa |
27222063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 436 - 489
Target Start/End: Original strand, 27222822 - 27222875
Alignment:
| Q |
436 |
tattcaccctggttccattttcctccacaagtcgagtcataccgctatttctgt |
489 |
Q |
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| T |
27222822 |
tattcaccctggttccgttttcctccacaagtcgagtcatactgctatttctgt |
27222875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 48818905 - 48818849
Alignment:
| Q |
3 |
tgcttccaactacaatcaaactcaattcatgaaatatttgaatgttacagcttaaat |
59 |
Q |
| |
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|||| ||||||||| | || |||| |||||||||||||||||||||||| ||||||| |
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| T |
48818905 |
tgctgccaactacactgaacctcatttcatgaaatatttgaatgttacaacttaaat |
48818849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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