View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9739_low_2 (Length: 399)
Name: NF9739_low_2
Description: NF9739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9739_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 136 - 382
Target Start/End: Original strand, 34075577 - 34075823
Alignment:
| Q |
136 |
ttaccaaacaatttcttagaaactcaaacatatctcatgttaggtagtatttacatcacgataattgctatatttgcaatctagagtagctatttcgtcc |
235 |
Q |
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| T |
34075577 |
ttaccaaacaatttcttagaaactcaaacatatctcatgttaggtagtatatacatcacgataattgctatatttgcaatctagagtagctatttcgtcc |
34075676 |
T |
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| Q |
236 |
acaaccactaactttaggggtggtagtgtgttagtcccataatgaaaatgctaccaaagtggttttttgttgcttgcttgcttcatgtgctagctagttc |
335 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
34075677 |
acaaccactaactttaggggtggtagtgtgttagtcccataatgaaaatgctaccaaagtggttttttattgcttgcttgcttcatgtgctagctagttc |
34075776 |
T |
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| Q |
336 |
ctttacatcaccagctgaaattgaaaccactcatcactatgcagaat |
382 |
Q |
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| T |
34075777 |
ctttacatcaccagttgaatttgaaaccactcatcactatgcagaat |
34075823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 15 - 128
Target Start/End: Original strand, 34075410 - 34075523
Alignment:
| Q |
15 |
tggaaaatgaatggaattgaagttggcgacgtgattataaaaagtgagttgatgcaaagagagaaaatgacaaccagtaccactaagaattattacattt |
114 |
Q |
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| T |
34075410 |
tggaaaatgaatggaattgaagttggcgacgtgattataaaaagtgaattgatgcaaagagagaaaatgacaaccagtaccactaagaattattacattt |
34075509 |
T |
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| Q |
115 |
acagcatgttaggt |
128 |
Q |
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| T |
34075510 |
acagcatgttaggt |
34075523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 136 - 221
Target Start/End: Original strand, 39436591 - 39436672
Alignment:
| Q |
136 |
ttaccaaacaatttcttagaaactcaaacatatctcatgttaggtagtatttacatcacgataattgctatatttgcaatctagag |
221 |
Q |
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||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| || |||||||||||| |
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| T |
39436591 |
ttaccaagcaatttcttagaaactcaaacata----atgttaggtagtatttacatcacgataattactagatgtgcaatctagag |
39436672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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