View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9739_low_3 (Length: 353)
Name: NF9739_low_3
Description: NF9739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9739_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 18 - 345
Target Start/End: Complemental strand, 2044350 - 2044009
Alignment:
| Q |
18 |
catatggacccggagtaggacgtgaacgtcgagctgcgcgacccgattttcctacaaacacacaagtaatacaattgatcaacattatataactagaaaa |
117 |
Q |
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| T |
2044350 |
catatggacccggagtaggacgtgaacgtcgagctgcgcgacccgattttcctacaaacacacaagtaatacaattgatcaacattatataactagaaaa |
2044251 |
T |
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| Q |
118 |
taaaatcagagatgaacacattcttaatttattgagtgaaatcactatactattttattgttcagacaaatcaaaaacatagaaagaatgcatgccttga |
217 |
Q |
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| T |
2044250 |
taaaatcagagatgaacacattcttaatttattgagtgaaatcactatactattttattgttcagacaaatcaaaaacatacaaagaatgcatgccttga |
2044151 |
T |
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| Q |
218 |
tttgaatcacaagtta--tataataatgtgtatacatcattcacgttcataattatattc------------aatcacattcaattattcatacacaacg |
303 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2044150 |
tttgaatcacaagttatatataataatgtgtatacatcattcacgttcataattatattcattcacattcataatcacattcaattattcatacacaacg |
2044051 |
T |
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| Q |
304 |
aaactatggaggaactcaccactacgtccaccaccaccacca |
345 |
Q |
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| T |
2044050 |
aagctatggaggaactcaccactacgtccaccaccaccacca |
2044009 |
T |
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