View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9739_low_4 (Length: 273)
Name: NF9739_low_4
Description: NF9739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9739_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 19 - 267
Target Start/End: Complemental strand, 16004986 - 16004738
Alignment:
| Q |
19 |
tactaattttacagtaatgtccgaggtgaaatcatgcgagctaactaggattggaggtggttgtccagatatatcaaaatgcatgaaaacttgtcttcca |
118 |
Q |
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| T |
16004986 |
tactaattttacagtaatgtcggaggtgaaatcatgcgagctaactaggattggaggtggttgtccagatatatcaaaatgcatgaaaacttgtcttcca |
16004887 |
T |
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| Q |
119 |
tgttatgttggcataggtgaaatccattactattgtcgtcatcctggtggtccaatattatacgaaacatgtgtttgcgtaatggtgaaaggtgctcctt |
218 |
Q |
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| T |
16004886 |
tgttatgttggcataggtgaaatccactactattgtcgtcatcctggtggtccaatattatacgaaacatgtgtttgcgtaatggtgaaaggtgctcctt |
16004787 |
T |
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| Q |
219 |
gtcaagtgcgcgggtgcccggggaacacacctcctgctgcctttgcttc |
267 |
Q |
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| T |
16004786 |
gtcaagtgcgcgggtgccctgggaacacacctcctgccgccgttgcttc |
16004738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 21 - 258
Target Start/End: Complemental strand, 48819152 - 48818915
Alignment:
| Q |
21 |
ctaattttacagtaatgtccgaggtgaaatcatgcgagctaactaggattggaggtggttgtccagatatatcaaaatgcatgaaaacttgtcttccatg |
120 |
Q |
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||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||| || |||| | |||||||||| ||||||||| |||||| |
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| T |
48819152 |
ctaattttacagtaatgtctgaggggaaatcatgcgagctaagcaggattggaggtggttgcccggataaagtaaaatgcatgcaaacttgtcatccatg |
48819053 |
T |
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| Q |
121 |
ttatgttggcataggtgaaatccattactattgtcgtcatcctggtggtccaatattatacgaaacatgtgtttgcgtaatggtgaaaggtgctccttgt |
220 |
Q |
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| T |
48819052 |
ttatattggcataggtcaagtcaactactattgtcgtcatgccgctagtccaatgttatacgaaacatgtgtttgtgaaatggtgaacggtgctccctgt |
48818953 |
T |
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| Q |
221 |
caagtgcgcgggtgcccggggaacacacctcctgctgc |
258 |
Q |
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| T |
48818952 |
caagttcgtggatgtccggggaacacacctcctgctgc |
48818915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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