View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9741_high_3 (Length: 429)
Name: NF9741_high_3
Description: NF9741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9741_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 6 - 362
Target Start/End: Original strand, 2046060 - 2046399
Alignment:
| Q |
6 |
aggagcagagatacgatcactcatacgtacgcgtcttttcgctgttatacttcatattaacacacaagtttgttagagtacaattacttgaactagaaat |
105 |
Q |
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| T |
2046060 |
aggagcagaaatacgatcactcatacgtacgcatcttttcgctgttatacttcatattaacac--aagtttgttagactacatttacttgaactagaaat |
2046157 |
T |
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| Q |
106 |
taattggataagattgagttagttagagactgatcatatagttaccacagttagtagcataaccatctctacatacatggttattgcatttgtagaatac |
205 |
Q |
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| T |
2046158 |
taattggataagattgagttagttagagactgatcacatagttaccacagttagtagcataaccatctctacatacatggttattgcatttgtagaatac |
2046257 |
T |
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| Q |
206 |
acacttgtatatataccacaccggtttattcattcttatatctcattcttcttctataatcatcatctcacaaagtaatgtttaatttttcaatccaaca |
305 |
Q |
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| T |
2046258 |
acacttgtatatataccacacccgtttattcattcttatatctcattcttcttctataatcatcatctcacaaagtaatgt---------------aaca |
2046342 |
T |
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| Q |
306 |
tacaattgattttagtttttgtatttccaaatttgatatttccgtggaatatttgat |
362 |
Q |
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| T |
2046343 |
tacaattgattttagtttttgtatttccaaatttgatatttccgtggaatatttgat |
2046399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 312 - 379
Target Start/End: Original strand, 2046399 - 2046466
Alignment:
| Q |
312 |
tgattttagtttttgtatttccaaatttgatatttccgtggaatatttgattttatggtccaaatgaa |
379 |
Q |
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| T |
2046399 |
tgattttagtttttgtatttccaaatttgatatttccgtggaatatttgattttatggttcaaatgaa |
2046466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 377 - 413
Target Start/End: Original strand, 2047499 - 2047535
Alignment:
| Q |
377 |
gaaatgtataaaaaggtgacgcgacctaaaacaattt |
413 |
Q |
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| T |
2047499 |
gaaatgtataaaaaggtgacgcgacctaaaacaattt |
2047535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 67 - 130
Target Start/End: Original strand, 23509223 - 23509286
Alignment:
| Q |
67 |
acacaagtttgttagagtacaattacttgaactagaaattaattggataagattgagttagtta |
130 |
Q |
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| T |
23509223 |
acacaaatttgctagagtttaattacgtgaactagaagttagttggataagattgagttagtta |
23509286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 129
Target Start/End: Complemental strand, 35987850 - 35987789
Alignment:
| Q |
68 |
cacaagtttgttagagtacaattacttgaactagaaattaattggataagattgagttagtt |
129 |
Q |
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| T |
35987850 |
cacaagtttgttagaggttagttatttgagctagaagttaattgaataagattgagttagtt |
35987789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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