View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9741_high_9 (Length: 272)
Name: NF9741_high_9
Description: NF9741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9741_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 29002192 - 29002445
Alignment:
| Q |
1 |
tctaaagaaaagtgacacttggactgcaaggattgtgaaagcagaaccatttcgtaacaatggtggttgtggttttggtagtggtgatgatgatcctgtt |
100 |
Q |
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| T |
29002192 |
tctaaagaaaagtgacacttggactgcaaggattgtgaaagccgaaccatttcgtaacaatggtggttgtggttttggtagtggtgatgatgatcctgtt |
29002291 |
T |
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| Q |
101 |
gcttgggctcaaagggagttgaaaaagtctgaaactttcaatgatagagcttcattgaagagagaaaaatcaatgagtcctgaagaattgaataaaagag |
200 |
Q |
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| T |
29002292 |
gcttgggctgaaagggagttgaaaaagtctgaaactttcaatgatagagcttcattgaaaagagaaaaatcaatgagtcctgaggaattgaataaaagag |
29002391 |
T |
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| Q |
201 |
ctgaagcttttatcaagaagtttaataatcagatgaagttgcagaggcttgaat |
254 |
Q |
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| T |
29002392 |
ctgaagcttttatcaagaagtttaataatcagatgaagttgcagaggcttgaat |
29002445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 5 - 247
Target Start/End: Original strand, 28962473 - 28962709
Alignment:
| Q |
5 |
aagaaaagtgacacttggactgcaaggattgtgaaagcagaaccatttcgtaacaatggtggttgtggttttggtagtggtgatgatgatcctgttgctt |
104 |
Q |
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| T |
28962473 |
aagaaaagtggcacttggactgcaaggattgtgaaagcagaaccatttcgtaacaatggcggtt------tttgtggtggtgatgatgatcctgttgctt |
28962566 |
T |
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| Q |
105 |
gggctcaaagggagttgaaaaagtctgaaactttcaatgatagagcttcattgaagagagaaaaatcaatgagtcctgaagaattgaataaaagagctga |
204 |
Q |
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| T |
28962567 |
gggctcaaagggagttgaaaaagtctgaaacattcaatgatagagcttcattgaagagagaaaaatcaatgagtcctgaagaattgaataaaagagctga |
28962666 |
T |
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| Q |
205 |
agcttttatcaagaagtttaataatcagatgaagttgcagagg |
247 |
Q |
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| T |
28962667 |
agcttttatcaagaagtttaataatcaaatgaagttgcagagg |
28962709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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