View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9741_low_16 (Length: 234)
Name: NF9741_low_16
Description: NF9741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9741_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 20 - 221
Target Start/End: Complemental strand, 47762754 - 47762553
Alignment:
| Q |
20 |
ttggtggctgcatttttaattttcctgtcatccacaggcaatcttttaacatagcatcaatggaagatctttcattttaggaagctgcaagatactcaag |
119 |
Q |
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| T |
47762754 |
ttggtggctgcatttttaattttcctgtcatccacaggcaatcttttaacatagcatcaatggaagatctttcattttaggaagctgcaagatactcaag |
47762655 |
T |
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| Q |
120 |
catgtgaattataagtggtcgtgtgaaagaaaatggactcatggtttctgttatacaactctgataagttattgtctgatatggaaccttgatcaaccta |
219 |
Q |
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| T |
47762654 |
catatgaattataagtggtcgtgtgaaagaaaatggacgcatggtttctgttatacaactctgataagttattgtctgatatggaaccttgatcaaccta |
47762555 |
T |
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| Q |
220 |
tg |
221 |
Q |
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| T |
47762554 |
tg |
47762553 |
T |
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