View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9741_low_2 (Length: 497)
Name: NF9741_low_2
Description: NF9741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9741_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 47314099 - 47314379
Alignment:
| Q |
1 |
ggattgatggcgttgtttaatactacactatatgacgtcatatttatatcaatcaaagtaatcttcnnnnnnnaactaatatattaatatataaatgcaa |
100 |
Q |
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| T |
47314099 |
ggattgatggcgttgtttaatactacactatatgacgtcatatttatatcaatcaaagtaatcttctttttt-aactaatatattaatatataaatgcaa |
47314197 |
T |
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| Q |
101 |
atgttatcatataagataaaatgttgttcgatttatatttgtaaattatcaaatatttattatagatacttaatttgccatc---nnnnnnnatcaatca |
197 |
Q |
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| T |
47314198 |
atgttatcatataagataaaatgttgttcgatttatatttgtaaagtatcaaatttttattatagatacttaatttgccatcttttttttttatcaatca |
47314297 |
T |
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| Q |
198 |
aaataatcacttgaccttttacctcatgaacattcatatgatcccttccttctaaggcttttgaatattgaagttctgctttg |
280 |
Q |
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| T |
47314298 |
aaataattacttgaccttttacctcatgaacattcatatgatcccttccttctaaggcttttgaatattg-agttctgctttg |
47314379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 304 - 481
Target Start/End: Original strand, 47314393 - 47314570
Alignment:
| Q |
304 |
cccttcaagtttgatgagttcatgaaactcctacatgattttggtgccaaaagaattgataaaagagttgtcaaagaaggagttatgtagttgtttaaag |
403 |
Q |
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| T |
47314393 |
cccttcaagtttgacgagttcatgaaactcctacatgattttggtgccaaaagaattgataaaagagttgtcaaagaaggagttatggagttgtttaaag |
47314492 |
T |
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| Q |
404 |
agcatcaagatttaatttcaagattcagcatcttcttgcaaccaggacatgaaatttcatttccattggataatgatc |
481 |
Q |
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| T |
47314493 |
agcatcaagatttaatttcaagattcagcatcttcttgcaaccaggacatgaaatttcatttccattggataatgatc |
47314570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 326 - 480
Target Start/End: Original strand, 47316154 - 47316308
Alignment:
| Q |
326 |
tgaaactcctacatgattttggtgccaaaagaattgataaaagagttgtcaaagaaggagttatgtagttgtttaaagagcatcaagatttaatttcaag |
425 |
Q |
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| T |
47316154 |
tgaaactcctacaagatttcggcgccaaaagaattgatagaagagtcgtcaaagaaggagttacggagttgttgaaagaacatcaagatttaattttaag |
47316253 |
T |
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| Q |
426 |
attcagcatcttcttgcaaccaggacatgaaatttcatttccattggataatgat |
480 |
Q |
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| T |
47316254 |
attcaacatcttcttgccaccaggacatgaaatctcacttccattggatgatgat |
47316308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 310 - 458
Target Start/End: Original strand, 47319648 - 47319796
Alignment:
| Q |
310 |
aagtttgatgagttcatgaaactcctacatgattttggtgccaaaagaattgataaaagagttgtcaaagaaggagttatgtagttgtttaaagagcatc |
409 |
Q |
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| T |
47319648 |
aagtttgatgatttcatgaaactcctacatgatttcagggccaaaagaattgatagaagagtcatcaaagaaggaattatggagttgttgaaagaacatc |
47319747 |
T |
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| Q |
410 |
aagatttaatttcaagattcagcatcttcttgcaaccaggacatgaaat |
458 |
Q |
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| T |
47319748 |
aagatttaatttcaagattcaacatcttcttgccaccaggagatgaaat |
47319796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 353 - 481
Target Start/End: Original strand, 47311098 - 47311226
Alignment:
| Q |
353 |
aaagaattgataaaagagttgtcaaagaaggagttatgtagttgtttaaagagcatcaagatttaatttcaagattcagcatcttcttgcaaccaggaca |
452 |
Q |
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| T |
47311098 |
aaagaattgatacagaagctgtgaaagaaagagttatggagttatttaaagaacatcaatatttgatttcaagattcaacatcttcatgccatcaggaca |
47311197 |
T |
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| Q |
453 |
tgaaatttcatttccattggataatgatc |
481 |
Q |
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| T |
47311198 |
tgaaatctcacttccattggatgatgatc |
47311226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 392 - 480
Target Start/End: Original strand, 47307062 - 47307150
Alignment:
| Q |
392 |
agttgtttaaagagcatcaagatttaatttcaagattcagcatcttcttgcaaccaggacatgaaatttcatttccattggataatgat |
480 |
Q |
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| T |
47307062 |
agttgttaaaagatcataaaggtttaatttcaagattcaacatcttcttgccaccaggacaagaaatctcacttccattggatgatgat |
47307150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 349 - 442
Target Start/End: Original strand, 47316435 - 47316528
Alignment:
| Q |
349 |
gccaaaagaattgataaaagagttgtcaaagaaggagttatgtagttgtttaaagagcatcaagatttaatttcaagattcagcatcttcttgc |
442 |
Q |
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| T |
47316435 |
gccaaaagaattgatgtaagagttgtcaaagaaggaatgatggagttgtttaaagaccataaaaatttactttcaggattcaacaccttcttgc |
47316528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 348 - 417
Target Start/End: Original strand, 47319899 - 47319968
Alignment:
| Q |
348 |
tgccaaaagaattgataaaagagttgtcaaagaaggagttatgtagttgtttaaagagcatcaagattta |
417 |
Q |
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| T |
47319899 |
tgccaaaagaattgatatgagagttttcaaagaaggactgatggagttgtttaaagaccataaagattta |
47319968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Original strand, 47319461 - 47319493
Alignment:
| Q |
190 |
atcaatcaaaataatcacttgaccttttacctc |
222 |
Q |
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| T |
47319461 |
atcaatcaaaataatcacttgaccttttacctc |
47319493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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