View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9741_low_3 (Length: 494)
Name: NF9741_low_3
Description: NF9741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9741_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 431; Significance: 0; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 19 - 484
Target Start/End: Original strand, 43320481 - 43320946
Alignment:
| Q |
19 |
agtggtgcatgaatggatggatgtgtgtaggctcaggtagaattgttttttggacaagagcttgggaatatttcaagctatgctccttcaggggttccct |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43320481 |
agtggtgcatgaatggatggatgtgtgtaggctcaggtagaattgttttttggacaagagcttgggaatatttcaagctatgctccttcaggggttccct |
43320580 |
T |
|
| Q |
119 |
cggaacacaccactagttccctatctgttaagggtgttgctcgaaatggttctcccccttggcgagatgatgacaaagatggccattacacttttgctgt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43320581 |
cggaacacaccactagttccctatctgttaagggtgttgctcgaaatggttctcccccttggcgagatgatgacaaagatggccattacacttttgctgt |
43320680 |
T |
|
| Q |
219 |
tggagaaaatttaacttcccgctgtaattacactttgccataattacctaatttacctttatatatatgtcttgggtcagatcctagttcattgttttta |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
43320681 |
tggagaaaatttaacttcccgctgtaattacactttgccataattacctaatttacctttatatatatgtcttgtgtcagatcctagttcattgttttta |
43320780 |
T |
|
| Q |
319 |
atgtagaatctgcaattatttgctctcaaaacacagcattttgatgcatatgcatctccgttcccatgttaatttttaagttgttaaatgaagacttaaa |
418 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43320781 |
atgtaggatctgcaattatttgctctcaaaacacagcattttgatgcatatgcatctccgttcccatgttaatttttaagttgttaaatgaagacttaaa |
43320880 |
T |
|
| Q |
419 |
tttatgtatttaaaataca-ttaactattaatgttttggatgtatgaatctcatcattgatgtccat |
484 |
Q |
| |
|
||||||||||| ||||||| |||||| ||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
43320881 |
tttatgtattt-aaatacatttaacttttaatgtttcggatgtatgaatctcatcattgatgaccat |
43320946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 21 - 444
Target Start/End: Complemental strand, 56064704 - 56064290
Alignment:
| Q |
21 |
tggtgcatgaatggatggatgtgtgtaggctcaggtagaattgttttttggacaagagcttgggaatatttcaagctatgctccttcaggggttccctcg |
120 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| || |
|
|
| T |
56064704 |
tggtgcatgaatggatggttgtgtgtaggctcaggtagaattgttttttggccaagagcttgggaatatttctagctatgctccttcaggggttcccacg |
56064605 |
T |
|
| Q |
121 |
gaacacaccactagttccctatctgtt-------aagggtgttgctcgaaatggttctcccccttggcgagatgatgacaaag-atggccattacacttt |
212 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||| || ||||||||||||| |
|
|
| T |
56064604 |
gaacacaccactagttctctatctgttaaggcctaagggtgttgctcgaaatg---------------------atgacaaattattgccattacacttt |
56064526 |
T |
|
| Q |
213 |
tgctgttggagaaaatttaacttcccgctgtaattacactttgccataattacctaatttacctt-------tatatatatgtcttgggtcagatcctag |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||| ||| ||||| | |
|
|
| T |
56064525 |
tgctgttggagaaaatttaacttcccgctgtaattacactttgccataactaccaaatttaccttcatatattatatatatgtcttgg-tcaaatccttg |
56064427 |
T |
|
| Q |
306 |
ttcattgtttttaatgtagaatctgcaattatttgctctcaaaacacagcattttgatgcatatgcatctccgttcccatgttaatttttaagttgttaa |
405 |
Q |
| |
|
|| | | ||||| ||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||| | |||||||||||||| |
|
|
| T |
56064426 |
ttaacttttttttctgtaggatctggaattatttgctctcaaaacacaacattttgatgcatatgcatctctgtttccatgtt-agttttaagttgttaa |
56064328 |
T |
|
| Q |
406 |
atgaagacttaaatttatgtatttaaaatacattaacta |
444 |
Q |
| |
|
||| |||||||| ||||||||||| |||||||||||||| |
|
|
| T |
56064327 |
atgcagacttaagtttatgtattt-aaatacattaacta |
56064290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 21 - 444
Target Start/End: Original strand, 50663582 - 50663998
Alignment:
| Q |
21 |
tggtgcatgaatggatggatgtgtgtaggctcaggtagaattgttttttggacaagagcttgggaatatttcaagctatgctccttcaggggttccctcg |
120 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||| |||||||||||||| || |
|
|
| T |
50663582 |
tggtgcatgaatggatggttgtgtgtaggctcaggtagaattgttttttggccaagagcttgggaatatttctaactatgcttcttcaggggttcccacg |
50663681 |
T |
|
| Q |
121 |
gaacacaccactagttccctatctgtt-------aagggtgttgctcgaaatggttctcccccttggcgagatgatgacaaag-atggccattacacttt |
212 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||| || |||||| |||||| |
|
|
| T |
50663682 |
gaacacaccactagttctctatctgttaaggcctaagggtgttgctcgaaatg---------------------atgacaaattattgccattgcacttt |
50663760 |
T |
|
| Q |
213 |
tgctgttggagaaaatttaacttcccgctgtaattacactttgccataattacctaatttacctt-------tatatatatgtcttgggtcagatcctag |
305 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||| |||||||||||||||| ||| ||||| | |
|
|
| T |
50663761 |
tgctgttggagaaaatttaacttcacgctgtaattacactttgccataactaccaaatttaccttcatatattatatatatgtcttgg-tcaaatccttg |
50663859 |
T |
|
| Q |
306 |
ttcattgtttttaat--gtagaatctgcaattatttgctctcaaaacacagcattttgatgcatatgcatctccgttcccatgttaatttttaagttgtt |
403 |
Q |
| |
|
|| ||| ||||| | |||| |||||||||||||||||||||||||||| ||||||||||||||||||| || ||| ||||||| | |||||||||||| |
|
|
| T |
50663860 |
ttaattttttttcttctgtaggatctgcaattatttgctctcaaaacacaacattttgatgcatatgcatatctgtttccatgtt-agttttaagttgtt |
50663958 |
T |
|
| Q |
404 |
aaatgaagacttaaatttatgtatttaaaatacattaacta |
444 |
Q |
| |
|
||||| |||||||| ||||||||||| |||||||||||||| |
|
|
| T |
50663959 |
aaatgcagacttaagtttatgtattt-aaatacattaacta |
50663998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 21 - 389
Target Start/End: Complemental strand, 2614556 - 2614195
Alignment:
| Q |
21 |
tggtgcatgaatggatggatgtgtgtaggctcaggtagaattgttttttggacaagagcttgggaatatttcaagctatgctccttcaggggttccctcg |
120 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| || |
|
|
| T |
2614556 |
tggtgcatgaatggatggttgtgtgtaggctcacgtagaattgttttttggccaagagcttgggaatatttctagctatgctccttcaggggttcccacg |
2614457 |
T |
|
| Q |
121 |
gaacacaccactagttccctatctgtt-------aagggtgttgctcgaaatggttctcccccttggcgagatgatgacaaag-atggccattacacttt |
212 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||| || ||||||||||||| |
|
|
| T |
2614456 |
gaacacaccactagttctctatctgttaaggcctaagggtgttgctcgaaatg---------------------atgacaaattattgccattacacttt |
2614378 |
T |
|
| Q |
213 |
tgctgttggagaaaatttaacttcccgctgtaattacactttgccataattacctaatttacct-------ttatatatatgtcttgggtcagatcctag |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||| ||||| ||||| | |
|
|
| T |
2614377 |
tgctgttggagaaaatttaacttcccgctgtaattacactttgccataactaccaaatttaccttcatatattatatatatgtctt-ggtcaaatccttg |
2614279 |
T |
|
| Q |
306 |
ttcattgtttttaatgtagaatctgcaattatttgctctcaaaacacagcattttgatgcatatgcatctccgttcccatgtta |
389 |
Q |
| |
|
|| ||| ||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||| |
|
|
| T |
2614278 |
ttaatttttttttctgtaggatctgcaattatttgctctcaaaacacaacattttgatgcatatgcatctctgtttccatgtta |
2614195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 21 - 389
Target Start/End: Original strand, 2216349 - 2216710
Alignment:
| Q |
21 |
tggtgcatgaatggatggatgtgtgtaggctcaggtagaattgttttttggacaagagcttgggaatatttcaagctatgctccttcaggggttccctcg |
120 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| || |
|
|
| T |
2216349 |
tggtgcatgaatggatggttgtgtgtaggctcacgtagaattgttttttggccaagagcttgggaatatttctagctatgctccttcaggggttcccacg |
2216448 |
T |
|
| Q |
121 |
gaacacaccactagttccctatctgttaagggtgttgctcgaaatggttctcccccttggcgagatgatgacaaa-gatggccattacacttttgctgtt |
219 |
Q |
| |
|
||||||||||||||||| |||| |||||||| | |||||| | | ||| ||||||||||| || ||||||||||||||| |||| |
|
|
| T |
2216449 |
gaacacaccactagttctctatttgttaagg--------cctaatggtgttgc------tcgaaatgatgacaaattattgccattacacttttgttgtt |
2216534 |
T |
|
| Q |
220 |
ggagaaaatttaacttcccgctgtaattacactttgccataattacctaatttacct-------ttatatatatgtcttgggtcagatcctagttcattg |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||| ||||| ||||| ||| ||| |
|
|
| T |
2216535 |
ggagaaaatttaacttcccgctgtaattacactttgccataactaccaaatttaccttcatatattatatatatgtctt-ggtcaaatccttgttaattt |
2216633 |
T |
|
| Q |
313 |
tttttaatgtagaatctgcaattatttgctctcaaaacacagcattttgatgcatatgcatctccgttcccatgtta |
389 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||| |
|
|
| T |
2216634 |
ttttttctgtaggatctgcaattatttgctctcaaaacacaacattttgatgcatatgcatctctgtttccatgtta |
2216710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 21 - 389
Target Start/End: Original strand, 16507342 - 16507703
Alignment:
| Q |
21 |
tggtgcatgaatggatggatgtgtgtaggctcaggtagaattgttttttggacaagagcttgggaatatttcaagctatgctccttcaggggttccctcg |
120 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||||| |||||||||| |||||| ||||||||||||| |||||||||||||||||||||||| || |
|
|
| T |
16507342 |
tggtgcatgaatggatggttgtgtgtaggctcacgtagaactgttttttggccaagagtttgggaatatttctagctatgctccttcaggggttcccacg |
16507441 |
T |
|
| Q |
121 |
gaacacaccactagttccctatctgttaagggtgttgctcgaaatggttctcccccttggcgagatgatgacaaa-gatggccattacacttttgctgtt |
219 |
Q |
| |
|
||||||||||||||||| |||| |||||||| | |||||| | | ||| ||||||||||| || ||||||||||||||| |||| |
|
|
| T |
16507442 |
gaacacaccactagttctctatttgttaagg--------cctaatggtgttgc------tcgaaatgatgacaaattattgccattacacttttgttgtt |
16507527 |
T |
|
| Q |
220 |
ggagaaaatttaacttcccgctgtaattacactttgccataattacctaatttacct-------ttatatatatgtcttgggtcagatcctagttcattg |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||| ||||| ||||| ||| ||| |
|
|
| T |
16507528 |
ggagaaaatttaacttcccgctgtaattacactttgccataactaccaaatttaccttcatatattatatatatgtctt-ggtcaaatccttgttaattt |
16507626 |
T |
|
| Q |
313 |
tttttaatgtagaatctgcaattatttgctctcaaaacacagcattttgatgcatatgcatctccgttcccatgtta |
389 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||| |
|
|
| T |
16507627 |
ttttttctgtaggatctgcaattatttgctctcaaaacacaacattttgatgcatatgcatctctgtttccatgtta |
16507703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 21 - 389
Target Start/End: Original strand, 52896926 - 52897289
Alignment:
| Q |
21 |
tggtgcatgaatggatggatgtgtgtaggctcaggtagaattgttttttggacaagagcttgggaatatttcaagctatgctccttcaggggttccctcg |
120 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||| || |
|
|
| T |
52896926 |
tggtgcatgaatggatggttgtgtgtaggctcacgtagaattgttttttggccaagagcttgagaatatttctagctatgctccttcaggggttcccacg |
52897025 |
T |
|
| Q |
121 |
gaacacaccactagttccctatctgtt-------aagggtgttgctcgaaatggttctcccccttggcgagatgatgacaaag-atggccattacacttt |
212 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||||||||| |||||||| || ||||||||||||| |
|
|
| T |
52897026 |
gaacacaccactagttctatatctgttaaggcttaagggtgttgctcgaaatg---------------------atgacaaattattgccattacacttt |
52897104 |
T |
|
| Q |
213 |
tgctgttggagaaaatttaacttcccgctgtaattacactttgccataattacctaatttacct-------ttatatatatgtcttgggtcagatcctag |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||| ||||| ||||| | |
|
|
| T |
52897105 |
tgctgttggagaaaatttaacttcccgctgtaattacactttgccataactaccaaatttaccttcatatattatatatatgtctt-ggtcaaatccttg |
52897203 |
T |
|
| Q |
306 |
ttcattgttttt--aatgtagaatctgcaattatttgctctcaaaacacagcattttgatgcatatgcatctccgttcccatgtta |
389 |
Q |
| |
|
|| ||| ||||| | ||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||| |
|
|
| T |
52897204 |
ttaatttttttttctctttaggatctgcaattatttgctctcaaaacacaacattttgatgcatatgcatctctgtttccatgtta |
52897289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 21 - 151
Target Start/End: Complemental strand, 55979396 - 55979266
Alignment:
| Q |
21 |
tggtgcatgaatggatggatgtgtgtaggctcaggtagaattgttttttggacaagagcttgggaatatttcaagctatgctccttcaggggttccctcg |
120 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| || |
|
|
| T |
55979396 |
tggtgcatgaatggatggttgtgtgtaggctcacgtagaattgttttttggccaagagcttgggaatatttctagctatgctccttcaggggttcccacg |
55979297 |
T |
|
| Q |
121 |
gaacacaccactagttccctatctgttaagg |
151 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |
|
|
| T |
55979296 |
gaacacaccactagttctctatctgttaagg |
55979266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 200 - 389
Target Start/End: Complemental strand, 55979230 - 55979031
Alignment:
| Q |
200 |
gccattacacttttgctgttggagaaaatttaacttcccgctgtaattacactttgccataattacctaatttacctt---------tatatatatgtct |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||| |
|
|
| T |
55979230 |
gccattacacttttgctgttggagaaaatttaacttcccgctgtaattacactttgccataactaccaaatttaccttcatatattatatatatatgtct |
55979131 |
T |
|
| Q |
291 |
tgggtcagatcctagttcattgtttttaat--gtagaatctgcaattatttgctctcaaaacacagcattttgatgcatatgcatctccgttcccatgtt |
388 |
Q |
| |
|
| ||||| ||||| ||| ||| ||||| | |||| || ||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||| |
|
|
| T |
55979130 |
t-ggtcaaatccttgttaatttttttttttccgtaggatttgcaattatttgctctcaaaacacaacattttgatgcatatgcatctctgtttccatgtt |
55979032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 244 - 444
Target Start/End: Original strand, 677750 - 677955
Alignment:
| Q |
244 |
aattacactttgccataattacctaatttacctt-------tatatatatgtcttgggtcagatcctagttcattgtttttaa-tgtagaatctgcaatt |
335 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||| |||||||||||||||| ||| ||||| ||| ||| ||||| ||||| |||||||||| |
|
|
| T |
677750 |
aattacactttgccataactaccaaatttaccttcatatattatatatatgtcttgg-tcaaatccttgttaatttttttttcctgtaggatctgcaatt |
677848 |
T |
|
| Q |
336 |
atttgctctcaaaacacagcattttgatgcatatgcatctccgttcccatgttaatttttaagttgttaaatgaagacttaaatttatgtatttaaaata |
435 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| ||| ||||||| | ||||||||||||||||| | |||||| ||||||||||| ||||| |
|
|
| T |
677849 |
atttgctctcaaaacacaacattttgatgcatatgcatctctgtttccatgtt-agttttaagttgttaaatgcaaacttaagtttatgtattt-aaata |
677946 |
T |
|
| Q |
436 |
cattaacta |
444 |
Q |
| |
|
||||||||| |
|
|
| T |
677947 |
cattaacta |
677955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 21 - 444
Target Start/End: Complemental strand, 41706560 - 41706136
Alignment:
| Q |
21 |
tggtgcatgaatggatggatgtgtgtaggctcaggtagaattgttttttggacaagagcttgggaatatttcaagctatgctccttcaggggttccctcg |
120 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| || |
|
|
| T |
41706560 |
tggtgcatgaatggatggttgtgtgtaggctcaggtagaattgttttttggccaagagcttgggaatatttctagctatgctccttcaggggttcccacg |
41706461 |
T |
|
| Q |
121 |
gaacacaccactagttccctatctgtt-------aagggtgttgctcgaaatggttctcccccttggcgagatgatgacaaa-gatggccattacacttt |
212 |
Q |
| |
|
|||||||||| ||||| ||||||||| |||||||||||||||||||||||| || | ||| |||||||||||||| || ||||||||||||| |
|
|
| T |
41706460 |
aaacacaccaccagttctctatctgttaaggccaaagggtgttgctcgaaatggttcttcctc-tggtgagatgatgacaaattattgccattacacttt |
41706362 |
T |
|
| Q |
213 |
tgctgttggagaaaatttaacttcccgctgtaattacactttgccataattacctaatttacctttatatatatgtcttgggtcagatcctagttcattg |
312 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||||||||||||||||| |||| |||||||||| || |||||| ||||||||||| ||| |||| |
|
|
| T |
41706361 |
tgctgttggagaaaatttaacttcccactgaaattacactttgccataactaccaaatttaccttcat-----tgtctt-ggtcagatccttgttaattg |
41706268 |
T |
|
| Q |
313 |
--tttttaatgtagaatctgcaattatttgctctcaaaacacagcattttgatgcatatgcatctccgttcccatgttaatttttaagttgttaaatgaa |
410 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| | ||||||||||||||||| | |
|
|
| T |
41706267 |
ttttttttctgtaggatctgcaattatttgctctcaaaacacaacattttgatgcatatgcatctctgttcccatgtt-agttttaagttgttaaatgca |
41706169 |
T |
|
| Q |
411 |
gacttaaatttatgtatttaaaatacattaacta |
444 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||| |
|
|
| T |
41706168 |
gacttaagtttatgtattt-aaatacattaacta |
41706136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 21 - 444
Target Start/End: Original strand, 38481502 - 38481939
Alignment:
| Q |
21 |
tggtgcatgaatggatggatgtgtgtaggctcaggtagaattgtttttt-ggacaagagcttgggaatatttcaagctatgctccttcaggggttccctc |
119 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| |||||| || |||||||||||||||||||| |||||||||||||||||||||||| | |
|
|
| T |
38481502 |
tggtgcatgaatggatggttgtgtgtaggctcaggtagaattatttttttggccaagagcttgggaatatttctagctatgctccttcaggggttcccac |
38481601 |
T |
|
| Q |
120 |
ggaacacaccactagttccctatctgttaagg-------gtgttgctcgaaatggttctcccccttggcgagatgatgacaaag-atggccattacactt |
211 |
Q |
| |
|
|||||||||||||| || |||||| |||||| |||||||||||||||||||||||||| || ||||| |||||||| || | |||||||||| |
|
|
| T |
38481602 |
ggaacacaccactaaatctctatctattaaggcgtaagggtgttgctcgaaatggttctccccct-ggtgagattatgacaaattattgtcattacactt |
38481700 |
T |
|
| Q |
212 |
ttgctgttggagaaaatttaacttcccgctgtaattacactttgccataattacctaatttacct-------ttatatatatgtcttgggtcagatccta |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||| ||||| ||||| |
|
|
| T |
38481701 |
ttgctgttggagaaaatttaacttcccgctgtaattacactttgccataactaccaaatttaccttcatatattatatatatgtctt-ggtcaaatcctt |
38481799 |
T |
|
| Q |
305 |
gttcattgttttt--aatgtagaatctgcaattatttgctctcaaaacacagcattttgatgcatatgcatctccgttcccatgttaatttttaagttgt |
402 |
Q |
| |
|
||| ||| ||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||| | ||||||||||| |
|
|
| T |
38481800 |
gttaattttttttcctctgtaggatctgcaattatttgctctcaaaacacaacattttgatgcatatgcatctctgtttccatgtt-agttttaagttgt |
38481898 |
T |
|
| Q |
403 |
taaatgaagacttaaatttatgtatttaaaatacattaacta |
444 |
Q |
| |
|
|||||| |||||||| ||||||||||| |||||||||||||| |
|
|
| T |
38481899 |
taaatgcagacttaagtttatgtattt-aaatacattaacta |
38481939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 21 - 444
Target Start/End: Complemental strand, 51305839 - 51305401
Alignment:
| Q |
21 |
tggtgcatgaatggatggatgtgtgtaggctcaggtagaattgttttttggacaagagcttgggaatatttcaagctatgctccttcaggggttccctcg |
120 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||| || |
|
|
| T |
51305839 |
tggtgcatgaatggatggttgtgtgtaggctcaggtagaattgttttttggccaagagcttgggaatatttatagttatgctccttcaggggttcccacg |
51305740 |
T |
|
| Q |
121 |
gaacacaccactagttccctatctgttaagg-------gtgttgctcgaaatggttctcccccttggcgagatgatgacaaag-atggccattacacttt |
212 |
Q |
| |
|
||||||||||||| || |||| | |||||| |||||||||||||||||||||||||| || |||||| ||||||| || ||||||||||||| |
|
|
| T |
51305739 |
gaacacaccactaaatctctatatattaaggcgtaagggtgttgctcgaaatggttctccccct-ggtgagatgctgacaaattattgccattacacttt |
51305641 |
T |
|
| Q |
213 |
tgctgttggagaaaatttaacttcccgctgtaattacactttgccataattacctaatttacct-------ttatatatatgtcttgggtcagatcctag |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||| ||||||||||||||| ||||| ||||| | |
|
|
| T |
51305640 |
tgctgttggagaaaatttaacttcccgctgtaattacactttgccataactagcaaatttaccttcatatattatatatatgtctt-ggtcaaatccttg |
51305542 |
T |
|
| Q |
306 |
ttcattgtttttaatgtagaatctgcaattatttgctctcaaaacacagcattttgatgcatatgcatctccgttcccatgttaattt---ttaagttgt |
402 |
Q |
| |
|
|| ||| ||||| | || ||||||||||||||||||| |||||||| |||||| ||||||||||||||| ||| |||||||| ||| ||||||||| |
|
|
| T |
51305541 |
ttaatttttttttcgggaggatctgcaattatttgctctaaaaacacaacattttaatgcatatgcatctctgtttccatgttagttttaattaagttgt |
51305442 |
T |
|
| Q |
403 |
taaatgaagacttaaatttatgtatttaaaatacattaacta |
444 |
Q |
| |
|
|||||| |||||||| ||||||||||| |||||||||||||| |
|
|
| T |
51305441 |
taaatgcagacttaagtttatgtattt-aaatacattaacta |
51305401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 21 - 389
Target Start/End: Original strand, 4563346 - 4563707
Alignment:
| Q |
21 |
tggtgcatgaatggatggatgtgtgtaggctcaggtagaattgttttttggacaagagcttgggaatatttcaagctatgctccttcaggggttccctcg |
120 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| || |
|
|
| T |
4563346 |
tggtgcatgaatggatggttgtgtgtaggctcacgtagaattgttttttggccaagagcttgggaatatttctagctatgctccttcaggggttcccacg |
4563445 |
T |
|
| Q |
121 |
gaacacaccactagttccctatctgtt-------aagggtgttgctcgaaatggttctcccccttggcgagatgatgacaaag-atggccattacacttt |
212 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||| || ||||||||||||| |
|
|
| T |
4563446 |
gaacacaccactagttctctatctgttaaggcctaagggtgttgctcgaaatg---------------------atgacaaattattgccattacacttt |
4563524 |
T |
|
| Q |
213 |
tgctgttggagaaaatttaacttcccgctgtaattacactttgccataattacctaatttacct-------ttatatatatgtcttgggtcagatcctag |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||| ||||| ||||| | |
|
|
| T |
4563525 |
tgctgttggagaaaatttaacttcccgctgtaattacactttgccataactaccaaatttaccttcatatattatatatatgtctt-ggtcaaatccttg |
4563623 |
T |
|
| Q |
306 |
ttcattgtttttaatgtagaatctgcaattatttgctctcaaaacacagcattttgatgcatatgcatctccgttcccatgtta |
389 |
Q |
| |
|
|| ||| ||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||| |
|
|
| T |
4563624 |
ttaatttttttttctgtaggatctgcaattatttgctctcaaaacacaacattttgatgcatatgcatctctgtttccatgtta |
4563707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 21 - 389
Target Start/End: Complemental strand, 11342911 - 11342549
Alignment:
| Q |
21 |
tggtgcatgaatggatggatgtgtgtaggctcaggtagaattgttttttggacaagagcttgggaatatttcaagctatgctccttcaggggttccctcg |
120 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||| || |
|
|
| T |
11342911 |
tggtgcatgaatggatggttgtgtgtaggctcacgtagaattgttttttggccaagagcttgggaatatttctagctatgcttcttcaggggttcccacg |
11342812 |
T |
|
| Q |
121 |
gaacacaccactagttccctatctgttaagggtgttgctcgaaatggttctcccccttggcgagatgatgacaaa-gatggccattacacttttgctgtt |
219 |
Q |
| |
|
||||||||||||||||| ||||||||||||| || |||||| | | ||| ||||||||||| || ||||||||||||||| || | |
|
|
| T |
11342811 |
gaacacaccactagttctctatctgttaagg-------tc-taatggtgttgc------tcgaaatgatgacaaattattgccattacacttttgttgct |
11342726 |
T |
|
| Q |
220 |
ggagaaaatttaacttcccgctgtaattacactttgccataattacctaatttacct-------ttatatatatgtcttgggtcagatcctagttca-tt |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||| ||||| ||||| ||| | || |
|
|
| T |
11342725 |
ggagaaaatttaacttcccgctgtaattacactttgccataactaccaaatttaccttcatatattatatatatgtctt-ggtcaaatccttgttaattt |
11342627 |
T |
|
| Q |
312 |
gtttttaatgtagaatctgcaattatttgctctcaaaacacagcattttgatgcatatgcatctccgttcccatgtta |
389 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||| |
|
|
| T |
11342626 |
ttttttcctgtaggatctgcaattatttgctctcaaaacacaacattttgatgcatatgcatctctgtttccatgtta |
11342549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 21 - 389
Target Start/End: Complemental strand, 11500930 - 11500568
Alignment:
| Q |
21 |
tggtgcatgaatggatggatgtgtgtaggctcaggtagaattgttttttggacaagagcttgggaatatttcaagctatgctccttcaggggttccctcg |
120 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||| || |
|
|
| T |
11500930 |
tggtgcatgaatggatggttgtgtgtaggctcacgtagaattgttttttggccaagagcttgggaatatttctagctatgcttcttcaggggttcccacg |
11500831 |
T |
|
| Q |
121 |
gaacacaccactagttccctatctgttaagggtgttgctcgaaatggttctcccccttggcgagatgatgacaaa-gatggccattacacttttgctgtt |
219 |
Q |
| |
|
||||||||||||||||| ||||||||||||| || |||||| | | ||| ||||||||||| || ||||||||||||||| || | |
|
|
| T |
11500830 |
gaacacaccactagttctctatctgttaagg-------tc-taatggtgttgc------tcgaaatgatgacaaattattgccattacacttttgttgct |
11500745 |
T |
|
| Q |
220 |
ggagaaaatttaacttcccgctgtaattacactttgccataattacctaatttacct-------ttatatatatgtcttgggtcagatcctagttca-tt |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||| ||||| ||||| ||| | || |
|
|
| T |
11500744 |
ggagaaaatttaacttcccgctgtaattacactttgccataactaccaaatttaccttcatatattatatatatgtctt-ggtcaaatccttgttaattt |
11500646 |
T |
|
| Q |
312 |
gtttttaatgtagaatctgcaattatttgctctcaaaacacagcattttgatgcatatgcatctccgttcccatgtta |
389 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||| |
|
|
| T |
11500645 |
ttttttcctgtaggatctgcaattatttgctctcaaaacacaacattttgatgcatatgcatctctgtttccatgtta |
11500568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 21 - 389
Target Start/End: Original strand, 14283386 - 14283748
Alignment:
| Q |
21 |
tggtgcatgaatggatggatgtgtgtaggctcaggtagaattgttttttggacaagagcttgggaatatttcaagctatgctccttcaggggttccctcg |
120 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||| || |
|
|
| T |
14283386 |
tggtgcatgaatggatggttgtgtgtaggctcacgtagaattgttttttggccaagagcttgaaaatatttctagctatgctccttcaggggttcccacg |
14283485 |
T |
|
| Q |
121 |
gaacacaccactagttccctatctgtt-------aagggtgttgctcgaaatggttctcccccttggcgagatgatgacaaag-atggccattacacttt |
212 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||| || ||||||||||||| |
|
|
| T |
14283486 |
gaacacaccactagttctctatctgttaaggcctaagggtgttgctcgaaatg---------------------atgacaaattattgccattacacttt |
14283564 |
T |
|
| Q |
213 |
tgctgttggagaaaatttaacttcccgctgtaattacactttgccataattacctaatttacct-------ttatatatatgtcttgggtcagatcctag |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||| ||||| ||||| | |
|
|
| T |
14283565 |
tgctgttggagaaaatttaacttcccgctgtaattacactttgccataactaccaaatttaccttcatatattatatatatgtctt-ggtcaaatccttg |
14283663 |
T |
|
| Q |
306 |
ttca-ttgtttttaatgtagaatctgcaattatttgctctcaaaacacagcattttgatgcatatgcatctccgttcccatgtta |
389 |
Q |
| |
|
|| | || ||||| | ||| || |||||| |||||||||||||||||| |||||||||||||||||||||| ||| |||||||| |
|
|
| T |
14283664 |
ttaattttttttttctataggatttgcaatgatttgctctcaaaacacaacattttgatgcatatgcatctctgtttccatgtta |
14283748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 21 - 195
Target Start/End: Original strand, 16420653 - 16420833
Alignment:
| Q |
21 |
tggtgcatgaatggatggatgtgtgtaggctcaggtagaattgttttttggacaagagcttgggaatatttcaagctatgctccttcaggggttccctcg |
120 |
Q |
| |
|
|||||||||||| ||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| || |
|
|
| T |
16420653 |
tggtgcatgaattgatggttgtgtgtaggttcaggtagaattgttttttggccaagagcttgggaatatttctagctatgctccttcaggggttcccacg |
16420752 |
T |
|
| Q |
121 |
gaacacaccactagttccctatctgt-------taagggtgttgctcgaaatggttctcccccttggcgagatgatgacaaa |
195 |
Q |
| |
|
||||||||||||||||| |||||| | |||||||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
16420753 |
gaacacaccactagttctctatctattaatgcctaagggtgttgctcgaaatggttctccccc-cggtgagatgatgacaaa |
16420833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 278 - 445
Target Start/End: Original strand, 16421262 - 16421425
Alignment:
| Q |
278 |
tatatatatgtcttgggtcagatcctagttcattgtttttaatgtagaatctgcaattatttgctctcaaaacacagcattttgatgcatatgcatctcc |
377 |
Q |
| |
|
|||||||||||||||| ||||||||| ||| ||| ||||| || || |||||||||||||| ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
16421262 |
tatatatatgtcttgg-tcagatccttgttaattttttttc-tggaggatctgcaattattttctctcaaaacacaacattttgatgcatatgcatctct |
16421359 |
T |
|
| Q |
378 |
gttcccatgttaatttttaagttgttaaatgaagacttaaatttatgtatttaaaatacattaactat |
445 |
Q |
| |
|
||| ||||||| | ||||||||||||||||| |||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
16421360 |
gtttccatgtt-agttttaagttgttaaatgcagacttaagtttatgtattt-aaatacattaactat |
16421425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 21 - 130
Target Start/End: Complemental strand, 41729408 - 41729302
Alignment:
| Q |
21 |
tggtgcatgaatggatggatgtgtgtaggctcaggtagaattgttttttggacaagagcttgggaatatttcaagctatgctccttcaggggttccctcg |
120 |
Q |
| |
|
|||||||||||||||||| ||||| ||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||| || |
|
|
| T |
41729408 |
tggtgcatgaatggatggttgtgt--aggatcaggtagaattgttttttggccaagagcttgggaatatttctagctatgctccttca-gggttcccacg |
41729312 |
T |
|
| Q |
121 |
gaacacacca |
130 |
Q |
| |
|
|||||||||| |
|
|
| T |
41729311 |
gaacacacca |
41729302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 228 - 284
Target Start/End: Original strand, 16420849 - 16420905
Alignment:
| Q |
228 |
tttaacttcccgctgtaattacactttgccataattacctaatttacctttatatat |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |||||||||| |||||| |
|
|
| T |
16420849 |
tttaacttcccgctgtaattacactttgccataactaccaaatttaccttcatatat |
16420905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 21 - 444
Target Start/End: Original strand, 34385471 - 34385906
Alignment:
| Q |
21 |
tggtgcatgaatggatggatgtgtgtaggctcaggtagaattgttttttggacaagagcttgggaatatttcaagctatgctccttcaggggttccctcg |
120 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||| | |||||||||||||||| ||||| || |
|
|
| T |
34385471 |
tggtgcatga-tggatggttgtgtgtaggctcaggtacaattgttttttggccaagagcttgggaatatttctaactatgctccttcagggattcccacg |
34385569 |
T |
|
| Q |
121 |
gaacacaccactagttccctatctgttaagg-------gtgttgctcgaaatggttctcccccttggcgagatgatgacaaag-atggccattacacttt |
212 |
Q |
| |
|
||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||| |
|
|
| T |
34385570 |
gaacacaccaccagttctctatctgttaaggcctaagggtgttgctcgaaatggttctccccct-ggagagatgatgacaaattatggccattacacttt |
34385668 |
T |
|
| Q |
213 |
tgctgttggagaaaatttaacttcccgctgtaattacactttgccataattacctaatttacctt---------tatatatatgtcttgggtcagatcct |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||| ||||||||| | |
|
|
| T |
34385669 |
tgctgttggagaaaatttaacttcccgctgtaattacactttaccataattaccaaatttaccttcatatattatatatatatgtctt-ggtcagatcat |
34385767 |
T |
|
| Q |
304 |
agttcattgtttttaatgtagaatctgcaattatttgctctcaaaacacagcattttgatgcatatgcatctccgttcccatgttaatttttaagttgtt |
403 |
Q |
| |
|
||| ||||||||| ||||| || ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| | |||||||||| | |
|
|
| T |
34385768 |
tgttaattgttttttctgtaggatatgcaattatttgctctcaaaacacaacattttgatgcatatgcatctttgttcccatgtt-agttttaagttggt |
34385866 |
T |
|
| Q |
404 |
aaatgaagacttaaatttatgtatttaaaatacattaacta |
444 |
Q |
| |
|
||||| |||||||| ||||||||||| |||||||||||||| |
|
|
| T |
34385867 |
aaatgcagacttaagtttatgtattt-aaatacattaacta |
34385906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 21 - 444
Target Start/End: Original strand, 1301808 - 1302244
Alignment:
| Q |
21 |
tggtgcatgaatggatggatgtgtgtaggctcaggtagaattgttttttggacaagagcttgggaatatttcaagctatgctccttcagggg-ttccctc |
119 |
Q |
| |
|
|||||||| ||||||||| ||||||||| |||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||| ||||| | |
|
|
| T |
1301808 |
tggtgcataaatggatggttgtgtgtagactcaggtagaattgttttttggccaaaagcttgggaatatttctagctatgctccttcagggggttcccac |
1301907 |
T |
|
| Q |
120 |
ggaacacaccactagttccctatctgttaagg-------gtgttgctcgaaatggttctcccccttggcgagatgatgacaaag-atggccattacactt |
211 |
Q |
| |
|
|||||||||||| | || |||||| |||||| ||||||||||||||| |||||||||| || |||||||||||||| || |||||||||||| |
|
|
| T |
1301908 |
ggaacacaccaccaaatctctatctattaaggcgtaagggtgttgctcgaaatgattctccccct-ggtgagatgatgacaaattattgccattacactt |
1302006 |
T |
|
| Q |
212 |
ttgctgttggagaaaatttaacttcccgctgtaattacactttgccataattacctaatttacct-------ttatatatatgtcttgggtcagatccta |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
1302007 |
ttgctgttggagaaaatttaacttcccgctgtaattacactttgccataaccaccaaatttaccttcatatattatatatatgtctt-ggtcagatcctt |
1302105 |
T |
|
| Q |
305 |
gttcattgttttt-aatgtagaatctgcaattatttgctctcaaaacacagcattttgatgcatatgcatctccgttcccatgttaatttttaagttgtt |
403 |
Q |
| |
|
||| ||| ||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||| || | |||||||||||| |
|
|
| T |
1302106 |
gttaattttttttctctggagaatctgcaattatttgctctcaaaacacaacattttgatgcatatgcatctctgtttccatatt-agttttaagttgtt |
1302204 |
T |
|
| Q |
404 |
aaatgaagacttaaatttatgtatttaaaatacattaacta |
444 |
Q |
| |
|
||||| |||||||| ||||||||||| |||||||||||||| |
|
|
| T |
1302205 |
aaatgcagacttaagtttatgtattt-aaatacattaacta |
1302244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 21 - 444
Target Start/End: Original strand, 38560155 - 38560570
Alignment:
| Q |
21 |
tggtgcatgaatggatggatgtgtgtaggctcaggtagaattgttttttggacaagagcttgggaatatttcaagctatgctccttcaggggttccctcg |
120 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||| |||||| || |
|
|
| T |
38560155 |
tggtgcatgaatggatggttgtgtgtaggctcaggtagaattgttttttggccaagagcgtgggaatatttctagctatgctccttcaggagttcccacg |
38560254 |
T |
|
| Q |
121 |
gaacacaccactagttccctatctgtt-------aagggtgttgctcgaaatggttctcccccttggcgagatgatgacaaag-atggccattacacttt |
212 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||| || ||||||||||||| |
|
|
| T |
38560255 |
gaacacaccactagttctctatctgttaaggcctaagggtgttgctcgaaatg---------------------atgacaaattattgccattacacttt |
38560333 |
T |
|
| Q |
213 |
tgctgttggagaaaatttaacttcccgctgtaattacactttgccataattacctaatttacctt-------tatatatatgtcttgggtcagatcctag |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||| ||| ||||| | |
|
|
| T |
38560334 |
tgctgttggagaaaatttaacttcccgctgtaattacactttgccataactaccaaatttaccttcatatattatatatatgtcttgg-tcaaatccttg |
38560432 |
T |
|
| Q |
306 |
ttcattgtttttaa-tgtagaatctgcaattatttgctctcaaaacacagcattttgatgcatatgcatctccgttcccatgttaatttttaagttgtta |
404 |
Q |
| |
|
|| ||| ||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||| | ||||||||||||| |
|
|
| T |
38560433 |
ttaatttttttttcctgtaggatctgcaattatttgctctcaaaacacaacattttgatgcatatgcatctctgtttccatgtt-agttttaagttgtta |
38560531 |
T |
|
| Q |
405 |
aatgaagacttaaatttatgtatttaaaatacattaacta |
444 |
Q |
| |
|
|||| |||||||| ||||||||||| |||||||||||||| |
|
|
| T |
38560532 |
aatgcagacttaagtttatgtattt-aaatacattaacta |
38560570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 21 - 284
Target Start/End: Original strand, 26625534 - 26625804
Alignment:
| Q |
21 |
tggtgcatgaatggatggatgtgtgtaggctcaggtagaattgttttttggacaagagcttgggaatatttcaagctatgctccttcaggggttccctcg |
120 |
Q |
| |
|
|||| ||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| || |
|
|
| T |
26625534 |
tggttcatgaatggatggttgtgtgtatgctcaggtagaattgttttttgaccaagagcttgggaatatttctagctatgctccttcaggggttcccacg |
26625633 |
T |
|
| Q |
121 |
gaacacaccactagttccctatctgttaagg-------gtgttgctcgaaatggttctcccccttggcgagatgatgacaaa-gatggccattacacttt |
212 |
Q |
| |
|
||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||| || ||||||||||||| |
|
|
| T |
26625634 |
gaacacaccaccagttctctatctgttaaggcttaagagtgttgctcgaaatggttctccccc-tggtgagatgatgacaaattatagccattacacttt |
26625732 |
T |
|
| Q |
213 |
tgctgttggagaaaatttaacttcccgctgtaattacactttgccataattacctaatttacctttatatat |
284 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||| | |||| |||||||||| |||||| |
|
|
| T |
26625733 |
tgctgttggagaaaatttaactttccgctgtaattacactttgccatgactaccaaatttaccttcatatat |
26625804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 21 - 389
Target Start/End: Complemental strand, 34089504 - 34089143
Alignment:
| Q |
21 |
tggtgcatgaatggatggatgtgtgtaggctcaggtagaattgttttttggacaagagcttgggaatatttcaagctatgctccttcaggggttccctcg |
120 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| || |
|
|
| T |
34089504 |
tggtgcatgaatggatggttgtatgtaggctcacgtagaattgttttttggtcaagagcttgggaatatttctagctatgctccttcaggggttcccacg |
34089405 |
T |
|
| Q |
121 |
gaacacaccactagttccctatctgtt-------aagggtgttgctcgaaatggttctcccccttggcgagatgatgacaaag-atggccattacacttt |
212 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||| || ||||||||||||| |
|
|
| T |
34089404 |
gaacacaccactagttctctatctgttaaggcctaagggtgttgctcgaaatg---------------------atgacaaattattgccattacacttt |
34089326 |
T |
|
| Q |
213 |
tgctgttggagaaaatttaacttcccgctgtaattacactttgccataattacctaatttacctt-------tatatatatgtcttgggtcagatcctag |
305 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| |||||||||| |||| |||||||||| |||||||||||||||| ||| ||||| | |
|
|
| T |
34089325 |
tgctgttggagaaaatttaacttctcgctgtaattacattttgccataactaccaaatttaccttcatatattatatatatgtcttgg-tcaaatccttg |
34089227 |
T |
|
| Q |
306 |
ttcattgtttttaatgtagaatctgcaattatttgctctcaaaacacagcattttgatgcatatgcatctccgttcccatgtta |
389 |
Q |
| |
|
|| ||| ||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||| |
|
|
| T |
34089226 |
ttaattttttttcctgtaggatctgcaattatttgctctcaaaacacaacattttgatgcatatgcatctctgtttccatgtta |
34089143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 21 - 389
Target Start/End: Original strand, 19898007 - 19898370
Alignment:
| Q |
21 |
tggtgcatgaatggatggatgtgtgtaggctcaggtagaattgttttttggacaagagcttgggaatatttcaagctatgctccttcaggggttccctcg |
120 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| || |
|
|
| T |
19898007 |
tggtgcatgaatggatggttgtgtgtaggctcacgtagaattgttttttggccaagagcttgggaatatttctagctatgctccttcaggggttcccacg |
19898106 |
T |
|
| Q |
121 |
gaacacaccactagttccctatctgtt-------aagggtgttgctcgaaatggttctcccccttggcgagatgatgacaaag-atggccattacacttt |
212 |
Q |
| |
|
||||||||||||||||| |||| |||| ||||||||||||||||||| |||||||| || ||||||||||||| |
|
|
| T |
19898107 |
gaacacaccactagttctctatttgttaaggcctaagggtgttgctcgaaatg---------------------atgacaaattattgccattacacttt |
19898185 |
T |
|
| Q |
213 |
tgctgttggagaaaatttaacttcccgctgtaattacactttgccataattacctaatttacct-------ttatatatatgtcttgggtcagatcctag |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||| ||||||||||||||| ||| | ||||| | |
|
|
| T |
19898186 |
tgctgttggagaaaatttaacttcccgctgtaattacactttgtcataactaccaaatttaccttcatatattatatatatgtctt-ggttaaatccttg |
19898284 |
T |
|
| Q |
306 |
ttca--ttgtttttaatgtagaatctgcaattatttgctctcaaaacacagcattttgatgcatatgcatctccgttcccatgtta |
389 |
Q |
| |
|
|| | || ||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||| |
|
|
| T |
19898285 |
ttaatttttttttttctgtaggatctgcaattatttgctctcaaaacacaacattttgatgcatatgcatctctgtttccatgtta |
19898370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 202 - 444
Target Start/End: Original strand, 23093942 - 23094190
Alignment:
| Q |
202 |
cattacacttttgctgttggagaaaatttaacttcccgctgtaattacactttgccataattacctaatttacctt-------tatatatatgtcttggg |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||| |
|
|
| T |
23093942 |
cattacacttttgctgttggagaaaatttaacttcccgctgtaattacactttgccataactaccaaatttaccttcatatattatatatatgtcttgg- |
23094040 |
T |
|
| Q |
295 |
tcagatcctagttcattgtttttaat--gtagaatctgcaattatttgctctcaaaacacagcattttgatgcatatgcatctccgttcccatgttaatt |
392 |
Q |
| |
|
||| ||||| ||| ||| ||||| | |||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||| | | |
|
|
| T |
23094041 |
tcaaatccttgttaattttttttcctctgtaggatctgcaattatttgctctcaaaacacaacattttgatgcatatgcatctctgtttccatgtt-agt |
23094139 |
T |
|
| Q |
393 |
tttaagttgttaaatgaagacttaaatttatgtatttaaaatacattaacta |
444 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||| |||||||||||||| |
|
|
| T |
23094140 |
tttaagttgttaaatgcagacttaagtttatgtattt-aaatacattaacta |
23094190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 200 - 389
Target Start/End: Complemental strand, 17641080 - 17640886
Alignment:
| Q |
200 |
gccattacacttttgctgttggagaaaatttaacttcccgctgtaattacactttgccataattacctaatttacct-------ttatatatatgtcttg |
292 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||| |
|
|
| T |
17641080 |
gccattacacttttgttgttggagaaaatttaacttcccgctgtaattacactttgccataactaccaaatttaccttcatatattatatatatgtctt- |
17640982 |
T |
|
| Q |
293 |
ggtcagatcctagttcattgtttttaatgtagaatctgcaattatttgctctcaaaacacagcattttgatgcatatgcatctccgttcccatgtta |
389 |
Q |
| |
|
||||| ||||| ||| ||| ||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||| |
|
|
| T |
17640981 |
ggtcaaatccttgttaatt-ttttttctgtaggatctgcaattatttgctctcaaaacacaacattttgatgcatatgcatctctgtttccatgtta |
17640886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 21 - 151
Target Start/End: Complemental strand, 17641246 - 17641116
Alignment:
| Q |
21 |
tggtgcatgaatggatggatgtgtgtaggctcaggtagaattgttttttggacaagagcttgggaatatttcaagctatgctccttcaggggttccctcg |
120 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| || |
|
|
| T |
17641246 |
tggtgcatgaatggatggttgtgtgtaggctcacgtagaattgttttttggccaagagcttgggaatatttctagctatgctccttcaggggttcccacg |
17641147 |
T |
|
| Q |
121 |
gaacacaccactagttccctatctgttaagg |
151 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |
|
|
| T |
17641146 |
caacacaccactagttctctatctgttaagg |
17641116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 21 - 151
Target Start/End: Original strand, 23093774 - 23093904
Alignment:
| Q |
21 |
tggtgcatgaatggatggatgtgtgtaggctcaggtagaattgttttttggacaagagcttgggaatatttcaagctatgctccttcaggggttccctcg |
120 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||| |||||||| || |
|
|
| T |
23093774 |
tggtgcatgaatggatggttgtgtgtaggctcaggtagaattgttttttcgccaagagcttgggaatatttctagctatgctccttcatgggttcccacg |
23093873 |
T |
|
| Q |
121 |
gaacacaccactagttccctatctgttaagg |
151 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |
|
|
| T |
23093874 |
gaacacaccactagttctctatctgttaagg |
23093904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 278 - 441
Target Start/End: Original strand, 26625857 - 26626016
Alignment:
| Q |
278 |
tatatatatgtcttgggtcagatcctagttcattgtttttaatgtagaatctgcaattatttgctctcaaaacacagcattttgatgcatatgcatctcc |
377 |
Q |
| |
|
|||||||||||||||| ||||||||| ||| ||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
26625857 |
tatatatatgtcttgg-tcagatccttgttaattgtttttt-tgtaggatctgcaattatttgctctcaaaacacaacattttgatgcatatgcatcttt |
26625954 |
T |
|
| Q |
378 |
gttcccatgttaatttttaagttgttaaatgaagacttaaatttatgtatttaaaatacattaa |
441 |
Q |
| |
|
||||||||||| | ||||||||||||||||| |||||||| ||||||||||| ||||||||||| |
|
|
| T |
26625955 |
gttcccatgtt-agttttaagttgttaaatgcagacttaagtttatgtattt-aaatacattaa |
26626016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 21 - 444
Target Start/End: Complemental strand, 35394242 - 35393828
Alignment:
| Q |
21 |
tggtgcatgaatggatggatgtgtgtaggctcaggtagaattgttttttggacaagagcttgggaatatttcaagctatgctccttcaggggttccctcg |
120 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||| |||||| || |
|
|
| T |
35394242 |
tggtgcatgaatggatggttgtgtgtaggctcaggtagaattgttttttggccaagagcgtgggaatatttctagctatgctccttcaggagttcccacg |
35394143 |
T |
|
| Q |
121 |
gaacacaccactagttccctatctgtt-------aagggtgttgctcgaaatggttctcccccttggcgagatgatgacaaag-atggccattacacttt |
212 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||| || ||||||||||||| |
|
|
| T |
35394142 |
gaacacaccactagttctctatctgttaaggcctaagggtgttgctcgaaatg---------------------atgacaaattattgccattacacttt |
35394064 |
T |
|
| Q |
213 |
tgctgttggagaaaatttaacttcccgctgtaattacactttgccataattacctaatttacctt-------tatatatatgtcttgggtcagatcctag |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||| |||||||||||||||| ||| ||||| | |
|
|
| T |
35394063 |
tgctgttggagaaaatttaacttcccgctgtaattacactttgcaataactaccaaatttaccttcatatattatatatatgtcttgg-tcaaatccttg |
35393965 |
T |
|
| Q |
306 |
ttcattgtttttaatgtagaatctgcaattatttgctctcaaaacacagcattttgatgcatatgcatctccgttcccatgttaatttttaagttgttaa |
405 |
Q |
| |
|
|| ||| ||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||| | |||||||||||||| |
|
|
| T |
35393964 |
ttaattttttttcctgtaggatctgcaattatttgctctcaaaacacaacattttgatgcatatgcatctctgtttccatgtt-agttttaagttgttaa |
35393866 |
T |
|
| Q |
406 |
atgaagacttaaatttatgtatttaaaatacattaacta |
444 |
Q |
| |
|
||| |||||||| ||||||||||| |||||||||||||| |
|
|
| T |
35393865 |
atgcagacttaagtttatgtattt-aaatacattaacta |
35393828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 21 - 289
Target Start/End: Complemental strand, 29720661 - 29720386
Alignment:
| Q |
21 |
tggtgcatgaatggatggatgtgtgtaggctcaggtagaattgttttttggacaagagcttgggaatatttcaagctatgctccttcaggggttccctcg |
120 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||||||||||||||||||| ||| |||||||||||||||| | |||||||||||||||||||||| || |
|
|
| T |
29720661 |
tggtgcatgaatggatggttgtgtgtaggcttaggtagaattgttttttggccaaaagcttgggaatatttctaactatgctccttcaggggttcccacg |
29720562 |
T |
|
| Q |
121 |
gaacacaccactagttccctatctgt-------taagggtgttgctcgaaatggttctcccccttggcgagatgatgacaaa-gatggccattacacttt |
212 |
Q |
| |
|
||||||||||| | ||| |||||||| |||| ||||||||||||||||||||||||| ||| |||||||||||||| || | ||||||||||| |
|
|
| T |
29720561 |
gaacacaccaccaattctctatctgttaagacctaagagtgttgctcgaaatggttctccccc-tggtgagatgatgacaaattattgtcattacacttt |
29720463 |
T |
|
| Q |
213 |
tgctgttggagaaaatttaacttcccgctgtaattacactttgccataattacctaatttacctttatatatatgtc |
289 |
Q |
| |
|
|| |||| |||||||||||||||| |||||||||||||||||||||||| |||| ||||| |||| |||||| |||| |
|
|
| T |
29720462 |
tgttgttagagaaaatttaacttcacgctgtaattacactttgccataactaccaaatttgccttcatatatttgtc |
29720386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 21 - 389
Target Start/End: Complemental strand, 31286394 - 31286031
Alignment:
| Q |
21 |
tggtgcatgaatggatggatgtgtgtaggctcaggtagaattgttttttggacaagagcttgggaatatttcaagctatgctccttcaggggttccctcg |
120 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||| |||||||| |||||||||||||||| ||||||| || |
|
|
| T |
31286394 |
tggtgcatgaatggatggttgtgtgtaggctcacgtagaattgttttttggccaagagcttggaaatatttctagctatgctccttcagaggttcccacg |
31286295 |
T |
|
| Q |
121 |
gaacacaccactagttccctatctgtt-------aagggtgttgctcgaaatggttctcccccttggcgagatgatgacaaag-atggccattacacttt |
212 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||| || ||||||||||||| |
|
|
| T |
31286294 |
gaacacaccactagttctctatctgttaaggcctaagggtgttgctcgaaatg---------------------atgacaaattattgccattacacttt |
31286216 |
T |
|
| Q |
213 |
tgctgttggagaaaatttaacttcccgctgtaattacactttgccataattacctaatttacct-------ttatatatatgtcttgggtcagatcctag |
305 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||| ||||| ||||| | |
|
|
| T |
31286215 |
tgctgtcggagaaaatttaactttccgctgtaattacactttgccataactaccaaatttaccttcatatattatatatatgtctt-ggtcaaatccttg |
31286117 |
T |
|
| Q |
306 |
ttca--ttgtttttaatgtagaatctgcaattatttgctctcaaaacacagcattttgatgcatatgcatctccgttcccatgtta |
389 |
Q |
| |
|
|| | || ||||| | ||| || |||||| |||||||||||||||||| |||||||||||||||||||||| ||| ||||||| |
|
|
| T |
31286116 |
ttaatttttttttttctataggatttgcaatgatttgctctcaaaacacaacattttgatgcatatgcatctctgtttacatgtta |
31286031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 186; Significance: 1e-100; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 21 - 444
Target Start/End: Complemental strand, 52947319 - 52946903
Alignment:
| Q |
21 |
tggtgcatgaatggatggatgtgtgtaggctcaggtagaattgttttttggacaagagcttgggaatatttcaagctatgctccttcaggggttccctcg |
120 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| || |
|
|
| T |
52947319 |
tggtgcatgaatggatggttgtgtgtaggctcacgtagaattgttttttggccaagagcttgggaatatttctagctatgctccttcaggggttcccacg |
52947220 |
T |
|
| Q |
121 |
gaacacaccactagttccctatctgtt-------aagggtgttgctcgaaatggttctcccccttggcgagatgatgacaaag-atggccattacacttt |
212 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||| || ||||||||||||| |
|
|
| T |
52947219 |
gaacacaccactagttctctatctgttaaggcctaagggtgttgctcgaaatg---------------------atgacaaattattgccattacacttt |
52947141 |
T |
|
| Q |
213 |
tgctgttggagaaaatttaacttcccgctgtaattacactttgccataattacctaatttacctt-------tatatatatgtcttgggtcagatcctag |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||| ||| ||||| | |
|
|
| T |
52947140 |
tgctgttggagaaaatttaacttcccgctgtaattacactttgccataactaccaaatttaccttcatatattatatatatgtcttgg-tcaaatccttg |
52947042 |
T |
|
| Q |
306 |
ttcattgtttttaat--gtagaatctgcaattatttgctctcaaaacacagcattttgatgcatatgcatctccgttcccatgttaatttttaagttgtt |
403 |
Q |
| |
|
|| ||| ||||| | |||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||| | |||||||||||| |
|
|
| T |
52947041 |
ttaatttttttttttctgtaggatctgcaattatttgctctcaaaacacaacattttgatgcatatgcatctctgtttccatgtt-agttttaagttgtt |
52946943 |
T |
|
| Q |
404 |
aaatgaagacttaaatttatgtatttaaaatacattaacta |
444 |
Q |
| |
|
||||| |||||||| ||||||||||| |||||||||||||| |
|
|
| T |
52946942 |
aaatgcagacttaagtttatgtattt-aaatacattaacta |
52946903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 21 - 286
Target Start/End: Original strand, 32611323 - 32611588
Alignment:
| Q |
21 |
tggtgcatgaatggatggatgtgtgtaggctcaggtagaattgttttttggacaagagcttgggaatatttcaagctatgctccttcaggggttccctcg |
120 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
32611323 |
tggtgcatgaatggatggttgtgtgtagactcaggtagaattgttttttggccaagagcttgggaatatttcaagttatgctccttcaggggttcgctcg |
32611422 |
T |
|
| Q |
121 |
gaacacaccactagttccctatctgttaagggtgttgctcgaaatggttctcccccttggcgagatgatgacaaa-gatggccattacacttttgctgtt |
219 |
Q |
| |
|
||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||| | | ||| |||||||||| ||||||||||||||||| || || |
|
|
| T |
32611423 |
gaacacaacaccagttctctatctgttaagggtgttgctcgaaatggttctccccc-tagtgagttgatgacaaattatggccattacactttttctctt |
32611521 |
T |
|
| Q |
220 |
ggagaaaatttaacttcccgctgtaattacactttgccataattacctaatttacctttatatatat |
286 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
32611522 |
ggagaaaatttaacttctcgctgtaattacactttgccataattaccaaatttaccttcatatatat |
32611588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 21 - 389
Target Start/End: Complemental strand, 52117800 - 52117439
Alignment:
| Q |
21 |
tggtgcatgaatggatggatgtgtgtaggctcaggtagaattgttttttggacaagagcttgggaatatttcaagctatgctccttcaggggttccctcg |
120 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| || |
|
|
| T |
52117800 |
tggtgcatgaatggatggttgtgtgtaggctcacgtagaattgttttttggccaagagcttgggaatatttctagctatgctccttcaggggttcccacg |
52117701 |
T |
|
| Q |
121 |
gaacacaccactagttccctatctgttaagggtgttgctcgaaatggttctcccccttggcgagatgatgacaaa-gatggccattacacttttgctgtt |
219 |
Q |
| |
|
||||||||||||||||| ||||||||||||| | |||||| | | ||| ||||||||||| || ||||||||||||||| |||| |
|
|
| T |
52117700 |
gaacacaccactagttctctatctgttaagg--------cctaatggtgttgc------tcgaaatgatgacaaattattgccattacacttttgttgtt |
52117615 |
T |
|
| Q |
220 |
ggagaaaatttaacttcccgctgtaattacactttgccataattacctaatttacct-------ttatatatatgtcttgggtcagatcctagttcattg |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||| ||||| ||||| ||| ||| |
|
|
| T |
52117614 |
ggagaaaatttaacttcccgctgtaattacactttgccataactaccaaatttaccttcatatattatatatatgtctt-ggtcaaatccttgttaattt |
52117516 |
T |
|
| Q |
313 |
tttttaatgtagaatctgcaattatttgctctcaaaacacagcattttgatgcatatgcatctccgttcccatgtta |
389 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||| |
|
|
| T |
52117515 |
ttttttctgtaggatctgcaattatttgctctcaaaacacaacattttgatgcatatgcatctctgtttccatgtta |
52117439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 21 - 441
Target Start/End: Original strand, 34650440 - 34650853
Alignment:
| Q |
21 |
tggtgcatgaatggatggatgtgtgtaggctcaggtagaattgttttttggacaagagcttgggaatatttcaagctatgctccttcaggggttccctcg |
120 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||| ||||| || |
|
|
| T |
34650440 |
tggtgcatgaatggatggttgtgtgtaggctcaggtagaattgttttttggccaagagtttgggaatatttctagctatgctccttcagggattcccacg |
34650539 |
T |
|
| Q |
121 |
gaacacaccactagttccctatctgtt-------aagggtgttgctcgaaatggttctcccccttggcgagatgatgacaaag-atggccattacacttt |
212 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||| || ||||||||||||| |
|
|
| T |
34650540 |
gaacacaccactagttctctatctgttaaggcctaagggtgttgctcgaaatg---------------------atgacaaattattgccattacacttt |
34650618 |
T |
|
| Q |
213 |
tgctgttggagaaaatttaacttcccgctgtaattacactttgccataattacctaatttacctt-------tatatatatgtcttgggtcagatcctag |
305 |
Q |
| |
|
|| |||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||| ||| ||||| | |
|
|
| T |
34650619 |
tgttgttagagaaaatttaacttcccgctgtaattacactttgccataactaccaaatttaccttcatatattatatatatgtcttgg-tcaaatccttg |
34650717 |
T |
|
| Q |
306 |
ttcattgtttttaat--gtagaatctgcaattatttgctctcaaaacacagcattttgatgcatatgcatctccgttcccatgttaatttttaagttgtt |
403 |
Q |
| |
|
|| ||| ||||| | |||| |||||||||||||||||||||||||||| |||||| ||||||||||||||| ||| ||||||| | |||||||||||| |
|
|
| T |
34650718 |
ttaatttttttttttctgtaggatctgcaattatttgctctcaaaacacaacattttaatgcatatgcatctctgtttccatgtt-agttttaagttgtt |
34650816 |
T |
|
| Q |
404 |
aaatgaagacttaaatttatgtatttaaaatacattaa |
441 |
Q |
| |
|
||||| |||||||| ||||||||||| ||||||||||| |
|
|
| T |
34650817 |
aaatgcagacttaagtttatgtattt-aaatacattaa |
34650853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 21 - 389
Target Start/End: Original strand, 1136802 - 1137163
Alignment:
| Q |
21 |
tggtgcatgaatggatggatgtgtgtaggctcaggtagaattgttttttggacaagagcttgggaatatttcaagctatgctccttcaggggttccctcg |
120 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| || |
|
|
| T |
1136802 |
tggtgcatgaatggatggttgtgtgtaggctcacgtagaattgttttttggccaagagcttgggaatatttctagctatgctccttcaggggttcccacg |
1136901 |
T |
|
| Q |
121 |
gaacacaccactagttccctatctgttaagggtgttgctcgaaatggttctcccccttggcgagatgatgacaaa-gatggccattacacttttgctgtt |
219 |
Q |
| |
|
||||| ||||||||||| ||||||||||||| | |||||| | | ||| ||||||||||| || ||||||||||||||| |||| |
|
|
| T |
1136902 |
gaacagaccactagttctctatctgttaagg--------cctaatggtgttgc------tcgaaatgatgacaaattattgccattacacttttgttgtt |
1136987 |
T |
|
| Q |
220 |
ggagaaaatttaacttcccgctgtaattacactttgccataattacctaatttacct-------ttatatatatgtcttgggtcagatcctagttcattg |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||| ||||| ||||| ||| ||| |
|
|
| T |
1136988 |
ggagaaaatttaacttcccgctgtaattacactttgccataactaccaaatttaccttcatatattatatatatgtctt-ggtcaaatccttgttaattt |
1137086 |
T |
|
| Q |
313 |
tttttaatgtagaatctgcaattatttgctctcaaaacacagcattttgatgcatatgcatctccgttcccatgtta |
389 |
Q |
| |
|
||||| ||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||| |
|
|
| T |
1137087 |
ttttttctgtaggatctacaattatttgctctcaaaacacaacattttgatgcatatgcatctctgtttccatgtta |
1137163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 21 - 389
Target Start/End: Original strand, 49725156 - 49725518
Alignment:
| Q |
21 |
tggtgcatgaatggatggatgtgtgtaggctcaggtagaattgttttttggacaagagcttgggaatatttcaagctatgctccttcaggggttccctcg |
120 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||| || |
|
|
| T |
49725156 |
tggtgcatgaatggatggttgtgtgtaggctcacgtagaattgttttttggccaagagcttgggaatatttctagttatgctccttcaggggttcccacg |
49725255 |
T |
|
| Q |
121 |
gaacacaccactagttccctatctgttaagggtgttgctcgaaatggttctcccccttggcgagatgatgacaaa-gatggccattacacttttgctgtt |
219 |
Q |
| |
|
||||||||||||||||| ||||||||||||| | |||||| | | ||| ||||||||||| || ||||||||||||||| |||| |
|
|
| T |
49725256 |
gaacacaccactagttctctatctgttaagg--------cctaatggtgttgc------tcgaaatgatgacaaattattgccattacacttttgttgtt |
49725341 |
T |
|
| Q |
220 |
ggagaaaatttaacttcccgctgtaattacactttgccataattacctaatttacct-------ttatatatatgtcttgggtcagatcctagttca-tt |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||| ||||| ||||| ||| | || |
|
|
| T |
49725342 |
ggagaaaatttaacttcccgctgtaattacactttgccataactaccaaatttaccttcatatattatatatatgtctt-ggtcaaatccttgttaattt |
49725440 |
T |
|
| Q |
312 |
gtttttaatgtagaatctgcaattatttgctctcaaaacacagcattttgatgcatatgcatctccgttcccatgtta |
389 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||| |
|
|
| T |
49725441 |
tttttttctgtaggatctgcaattatttgctctcaaaacacaacattttgatgcatatgcatctctgtttccatgtta |
49725518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 21 - 151
Target Start/End: Complemental strand, 11033288 - 11033158
Alignment:
| Q |
21 |
tggtgcatgaatggatggatgtgtgtaggctcaggtagaattgttttttggacaagagcttgggaatatttcaagctatgctccttcaggggttccctcg |
120 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||| || |
|
|
| T |
11033288 |
tggtgcatgaatggatggttgtgtgtaggctcacgtagaattgttttttggccaagagcttgggaatatttctagctatgctccttcaggagttcccacg |
11033189 |
T |
|
| Q |
121 |
gaacacaccactagttccctatctgttaagg |
151 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |
|
|
| T |
11033188 |
gaacacaccactagttctctatctgttaagg |
11033158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 202 - 389
Target Start/End: Complemental strand, 11033120 - 11032925
Alignment:
| Q |
202 |
cattacacttttgctgttggagaaaatttaacttcccgctgtaattacactttgccataattacctaatttacct-------ttatatatatgtcttggg |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||| || |
|
|
| T |
11033120 |
cattacacttttgctgttggagaaaatttaacttcccgctgtaattacactttgccataactaccaaatttaccttcatatattatatatatgtctt-gg |
11033022 |
T |
|
| Q |
295 |
tcagatcctagttca--ttgtttttaatgtagaatctgcaattatttgctctcaaaacacagcattttgatgcatatgcatctccgttcccatgtta |
389 |
Q |
| |
|
||| ||||| ||| | || ||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||| |
|
|
| T |
11033021 |
tcaaatccttgttaattttttttttcctgtaggatctgcaattatttgctctcaaaacacaacattttgatgcatatgcatctctgttttcatgtta |
11032925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 293 - 444
Target Start/End: Original strand, 32611621 - 32611770
Alignment:
| Q |
293 |
ggtcagatcctagttcattgtttttaatgtagaatctgcaattatttgctctcaaaacacagcattttgatgcatatgcatctccgttcccatgttaatt |
392 |
Q |
| |
|
||||||||||| ||| ||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| | | |
|
|
| T |
32611621 |
ggtcagatccttgttaattgttttttctgtaggatctgcaattatttgctctcaaaacacaacattttgatgcatatgcatctctgttcccatgtt-agt |
32611719 |
T |
|
| Q |
393 |
tttaagttgttaaatgaagacttaaatttatgtatttaaaatacattaacta |
444 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||| |||||||||||||| |
|
|
| T |
32611720 |
tttaagttgttaaatgcagacttaagtttatgtattt-aaatacattaacta |
32611770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 18 - 264
Target Start/End: Original strand, 34409848 - 34410082
Alignment:
| Q |
18 |
aagtggtgcatgaatggatggatgtgtgtaggctcaggtagaattgttttttggacaagagcttgggaatatttcaagctatgctccttcaggggttccc |
117 |
Q |
| |
|
||||||| |||| |||||||| ||||||||||||||||||| |||||||| |||||||||| ||| |||||||||||||||||||||||||| | |
|
|
| T |
34409848 |
aagtggtacatgtatggatggctgtgtgtaggctcaggtaggattgttttgtggacaagaggttgagaatatttcaagctatgctccttcagaacata-- |
34409945 |
T |
|
| Q |
118 |
tcggaacacaccactagttccctatctgttaagggtgttgctcgaaatggttctcccccttggcgagatgatgacaaagatggccattacacttttgctg |
217 |
Q |
| |
|
| | ||||||||| || | ||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
34409946 |
-------atatcactagttctctgt---ttaagggagttgctcgaaatggttctcccccatggcgagatgacgacaaagatggccattacatgtttgagc |
34410035 |
T |
|
| Q |
218 |
ttggagaaaatttaacttcccgctgtaattacactttgccataatta |
264 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||| |||| |||| |
|
|
| T |
34410036 |
ttggagataatttaacttctcgctgtaattacactttaccatcatta |
34410082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 166 - 245
Target Start/End: Original strand, 39209053 - 39209132
Alignment:
| Q |
166 |
ggttctcccccttggcgagatgatgacaaagatggccattacacttttgctgttggagaaaatttaacttcccgctgtaa |
245 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| || ||||| |
|
|
| T |
39209053 |
ggttctccccaatggcgagatgatgacaaagatggccattacgtgtttgcgcttggagaaaatttaacttctcggtgtaa |
39209132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 171; Significance: 1e-91; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 21 - 389
Target Start/End: Complemental strand, 11681099 - 11680738
Alignment:
| Q |
21 |
tggtgcatgaatggatggatgtgtgtaggctcaggtagaattgttttttggacaagagcttgggaatatttcaagctatgctccttcaggggttccctcg |
120 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| || |
|
|
| T |
11681099 |
tggtgcatgaatggatggttgtgtgtaggctcacgtagaattgttttttggccaagagcttgggaatatttctagctatgctccttcaggggttcccacg |
11681000 |
T |
|
| Q |
121 |
gaacacaccactagttccctatctgttaagggtgttgctcgaaatggttctcccccttggcgagatgatgacaaa-gatggccattacacttttgctgtt |
219 |
Q |
| |
|
||||||||||||||||| ||||||||||||| | |||||| | | ||| ||||||||||| || ||||||||||||||| |||| |
|
|
| T |
11680999 |
gaacacaccactagttctctatctgttaagg--------cctaatggtgttgc------tcgaaatgatgacaaattattgccattacacttttgttgtt |
11680914 |
T |
|
| Q |
220 |
ggagaaaatttaacttcccgctgtaattacactttgccataattacctaatttacct-------ttatatatatgtcttgggtcagatcctagttcattg |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||| ||||| ||||| ||| ||| |
|
|
| T |
11680913 |
ggagaaaatttaacttcccgctgtaattacactttgccataactaccaaatttaccttcatatattatatatatgtctt-ggtcaaatccttgttaattt |
11680815 |
T |
|
| Q |
313 |
tttttaatgtagaatctgcaattatttgctctcaaaacacagcattttgatgcatatgcatctccgttcccatgtta |
389 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||| |
|
|
| T |
11680814 |
ttttttctgtaggatctgcaattatttgctctcaaaacacaacattttgatgcatatgcatctctgtttccatgtta |
11680738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 21 - 389
Target Start/End: Original strand, 32672874 - 32673235
Alignment:
| Q |
21 |
tggtgcatgaatggatggatgtgtgtaggctcaggtagaattgttttttggacaagagcttgggaatatttcaagctatgctccttcaggggttccctcg |
120 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||| || || |
|
|
| T |
32672874 |
tggtgcatgaatggatggttgtgtgtaggctcacgtagaattgttttttggccaagagattgggaatatttctagctatgctccttcaggggtttccacg |
32672973 |
T |
|
| Q |
121 |
gaacacaccactagttccctatctgttaagggtgttgctcgaaatggttctcccccttggcgagatgatgacaaa-gatggccattacacttttgctgtt |
219 |
Q |
| |
|
||||||||||||||||| ||||||||||||| | |||||| | | ||| ||||||||||| || ||||||||||||||| |||| |
|
|
| T |
32672974 |
gaacacaccactagttctctatctgttaagg--------cctaatggtgttgc------tcgaaatgatgacaaattattgccattacacttttgttgtt |
32673059 |
T |
|
| Q |
220 |
ggagaaaatttaacttcccgctgtaattacactttgccataattacctaatttacct-------ttatatatatgtcttgggtcagatcctagttcattg |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||| ||||| ||||| ||| ||| |
|
|
| T |
32673060 |
ggagaaaatttaacttcccgctgtaattacactttgccataactaccaaatttaccttcatatattatatatatgtctt-ggtcaaatccttgttaattt |
32673158 |
T |
|
| Q |
313 |
tttttaatgtagaatctgcaattatttgctctcaaaacacagcattttgatgcatatgcatctccgttcccatgtta |
389 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||| |
|
|
| T |
32673159 |
ttttttctgtaggatctgcaattatttgctctcaaaacacaacattttgatgcatatgcatctctgtttccatgtta |
32673235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 21 - 389
Target Start/End: Complemental strand, 35124181 - 35123819
Alignment:
| Q |
21 |
tggtgcatgaatggatggatgtgtgtaggctcaggtagaattgttttttggacaagagcttgggaatatttcaagctatgctccttcaggggttccctcg |
120 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||| || |
|
|
| T |
35124181 |
tggtgcatgaatggatggttgtgtgtaggctcacgtagaattgttttttggccaagagcttgggaatatttctagctatgttccttcaggggttcccacg |
35124082 |
T |
|
| Q |
121 |
gaacacaccactagttccctatctgttaagggtgttgctcgaaatggttctcccccttggcgagatgatgacaaa-gatggccattacacttttgctgtt |
219 |
Q |
| |
|
||||||||||||||||| ||||||||||||| | |||||| | | ||| ||||||||||| || ||||||||||||||| |||| |
|
|
| T |
35124081 |
gaacacaccactagttctctatctgttaagg--------cctaatggtgttgc------tcgaaatgatgacaaattattgccattacacttttgttgtt |
35123996 |
T |
|
| Q |
220 |
ggagaaaatttaacttcccgctgtaattacactttgccataattacctaatttacct-------ttatatatatgtcttgggtcagatcctagttca-tt |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||| ||||| ||||| ||| | || |
|
|
| T |
35123995 |
ggagaaaatttaacttcccgctgtaattacactttgccataactaccaaatttaccttcatatattatatatatgtctt-ggtcaaatccttgttaattt |
35123897 |
T |
|
| Q |
312 |
gtttttaatgtagaatctgcaattatttgctctcaaaacacagcattttgatgcatatgcatctccgttcccatgtta |
389 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||| |
|
|
| T |
35123896 |
tttttttctgtaggatctgcaattatttgctctcaaaacacaacattttgatgcatatgcatctctgtttccatgtta |
35123819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 200 - 389
Target Start/End: Complemental strand, 27242352 - 27242154
Alignment:
| Q |
200 |
gccattacacttttgctgttggagaaaatttaacttcccgctgtaattacactttgccataattacctaatttacct-------ttatatatatgtcttg |
292 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||| |||| ||||||||| ||||||||||||||| |
|
|
| T |
27242352 |
gccattacacttttgttgttggagaaaatttaacttcctgttgtaattacactttgccataactaccaaatttaccttaatttattatatatatgtctt- |
27242254 |
T |
|
| Q |
293 |
ggtcagatcctagttcattgttt---ttaatgtagaatctgcaattatttgctctcaaaacacagcattttgatgcatatgcatctccgttcccatgtta |
389 |
Q |
| |
|
||||| ||||| ||| ||| ||| || |||||| || ||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||| |
|
|
| T |
27242253 |
ggtcaaatccttgttaattttttttctttatgtaggatatgcaattatttgctctcaaaacacaacattttgatgcatatgcatctctgtttccatgtta |
27242154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 21 - 151
Target Start/End: Complemental strand, 27242518 - 27242388
Alignment:
| Q |
21 |
tggtgcatgaatggatggatgtgtgtaggctcaggtagaattgttttttggacaagagcttgggaatatttcaagctatgctccttcaggggttccctcg |
120 |
Q |
| |
|
||||| |||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||| | ||||||| |||||||||||||| | |
|
|
| T |
27242518 |
tggtgtatgaatggatggttgtgtgtaggctcacgtagaattgttttttggccaagagcttgggaatatttataactatgcttcttcaggggttcccatg |
27242419 |
T |
|
| Q |
121 |
gaacacaccactagttccctatctgttaagg |
151 |
Q |
| |
|
||||||||||||||||| |||||| |||||| |
|
|
| T |
27242418 |
gaacacaccactagttctctatctattaagg |
27242388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 320 - 389
Target Start/End: Original strand, 14865586 - 14865655
Alignment:
| Q |
320 |
tgtagaatctgcaattatttgctctcaaaacacagcattttgatgcatatgcatctccgttcccatgtta |
389 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||| |
|
|
| T |
14865586 |
tgtaggatctgcaattatttgctctcaaaacacaacattttgatgcatatgcatctctgtttccatgtta |
14865655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 160; Significance: 5e-85; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 21 - 389
Target Start/End: Original strand, 10918441 - 10918803
Alignment:
| Q |
21 |
tggtgcatgaatggatggatgtgtgtaggctcaggtagaattgttttttggacaagagcttgggaatatttcaagctatgctccttcaggggttccctcg |
120 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||| || |
|
|
| T |
10918441 |
tggtgcatgaatggatggttgtgtgtaggctcacgtagaattgttttttggccaagagcttgggaatatttctagttatgctccttcaggggttcccacg |
10918540 |
T |
|
| Q |
121 |
gaacacaccactagttccctatctgttaagggtgttgctcgaaatggttctcccccttggcgagatgatgacaaa-gatggccattacacttttgctgtt |
219 |
Q |
| |
|
||||||||||||||||| ||||||||||||| | |||||| | | ||| ||||||||||| || ||||||||||||||| |||| |
|
|
| T |
10918541 |
gaacacaccactagttctctatctgttaagg--------cctaatggtgttgc------tcgaaatgatgacaaattattgccattacacttttgttgtt |
10918626 |
T |
|
| Q |
220 |
ggagaaaatttaacttcccgctgtaattacactttgccataattacctaatttacct-------ttatatatatgtcttgggtcagatcctagttca-tt |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||| ||||| ||||| ||| | || |
|
|
| T |
10918627 |
ggagaaaatttaacttcccgctgtaattacactttgccataactaccaaatttaccttcatatattatatatatgtctt-ggtcaaatccttgttaattt |
10918725 |
T |
|
| Q |
312 |
gtttttaatgtagaatctgcaattatttgctctcaaaacacagcattttgatgcatatgcatctccgttcccatgtta |
389 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||| |
|
|
| T |
10918726 |
tttttttctgtaggatctgcaattatttgctctcaaaacacaacattttgatgcatatgcatctctgtttccatgtta |
10918803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 21 - 389
Target Start/End: Complemental strand, 1387121 - 1386760
Alignment:
| Q |
21 |
tggtgcatgaatggatggatgtgtgtaggctcaggtagaattgttttttggacaagagcttgggaatatttcaagctatgctccttcaggggttccctcg |
120 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||| || |
|
|
| T |
1387121 |
tggtgcatgaatggatggttgtgtgtaggctcacgtagaattgttttttggccaagagcttggaaatatttctagctatgctccttcaggggttcccacg |
1387022 |
T |
|
| Q |
121 |
gaacacaccactagttccctatctgtt-------aagggtgttgctcgaaatggttctcccccttggcgagatgatgacaaag-atggccattacacttt |
212 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||| || ||||||||||||| |
|
|
| T |
1387021 |
gaacacaccactagttctctatctgttaaggcctaagggtgttgctcgaaatg---------------------atgacaaattattgccattacacttt |
1386943 |
T |
|
| Q |
213 |
tgctgttggagaaaatttaacttcccgctgtaattacactttgccataattacctaatttacct-------ttatatatatgtcttgggtcagatcctag |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||| ||||| ||||| | |
|
|
| T |
1386942 |
tgctgttggagaaaatttaacttcccgctgtaattacactttgccataactaccaaatttaccttcatatattatatatatgtctt-ggtcaaatccttg |
1386844 |
T |
|
| Q |
306 |
ttca-ttgtttttaatgtagaatctgcaattatttgctctcaaaacacagcattttgatgcatatgcatctccgttcccatgtta |
389 |
Q |
| |
|
|| | || ||||| ||||| || ||| ||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||| |
|
|
| T |
1386843 |
ttaattttttttttctgtaggatttgc-attatttgctctcaaaacacaacattttgatgcatatgcatctctgtttccatgtta |
1386760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 233 - 385
Target Start/End: Original strand, 4138284 - 4138444
Alignment:
| Q |
233 |
cttcccgctgtaattacactttgccataattacctaatttacctttatatat-----atgtcttgggtcagatcctagttcattgtttttaat---gtag |
324 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||| |||||||||| |||||| || | | ||||| ||||| ||| ||| ||||| | |||| |
|
|
| T |
4138284 |
cttcccgctgtaattacactttgtcataactaccaaatttaccttcatatattatatatattcttggtcaaatccttgttaatttttttttcttctgtag |
4138383 |
T |
|
| Q |
325 |
aatctgcaattatttgctctcaaaacacagcattttgatgcatatgcatctccgttcccat |
385 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||| |
|
|
| T |
4138384 |
gatctgcaattatttgctctcaaaacacaacattttgatgcatatgcatctctgtttccat |
4138444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 64
Target Start/End: Original strand, 4138240 - 4138283
Alignment:
| Q |
21 |
tggtgcatgaatggatggatgtgtgtaggctcaggtagaattgt |
64 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
4138240 |
tggtgcatgaatggatgattgtgtgtaggctcacgtagaattgt |
4138283 |
T |
|
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Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 43200976 - 43200939
Alignment:
| Q |
21 |
tggtgcatgaatggatggatgtgtgtaggctcaggtag |
58 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
43200976 |
tggtgcatgaatggatggttgtgtgtaggctcaggtag |
43200939 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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