View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9742_high_6 (Length: 244)
Name: NF9742_high_6
Description: NF9742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9742_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 7488387 - 7488153
Alignment:
| Q |
1 |
ccttcatgaaacaaaaccctatgtaactcttctctcatgtgacaccgtaatacacatcaaatccctcttttccaacagcaattgtcgcacttttataaga |
100 |
Q |
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| T |
7488387 |
ccttcatgaaacaaaaccctatgtaactcttctctcatgtcacaccgtaatacacatcaaatccctcttttccaacagcaattgtcgcacttttataaga |
7488288 |
T |
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| Q |
101 |
atggaatcatatggtagttgcaatggcgttttctgtctccaaggtttgtgttggtttcataagagttgtcttgatgagttaattatgtggaacccaacaa |
200 |
Q |
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| T |
7488287 |
atggaatcatatggtagttgcaatggcgttttctgtctccaaggtttgtgttggtttcataagagttgtcttgatgagttaattatgtggaaccctacaa |
7488188 |
T |
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| Q |
201 |
ctagagaggtccatcgtgttcctccgagtctctgc |
235 |
Q |
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| T |
7488187 |
ctagagaggtccaccgtgttcctccgagtctctgc |
7488153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 164 - 222
Target Start/End: Complemental strand, 7475354 - 7475296
Alignment:
| Q |
164 |
agttgtcttgatgagttaattatgtggaacccaacaactagagaggtccatcgtgttcc |
222 |
Q |
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| T |
7475354 |
agttgtctagatgagttaattatttggaacccaacaactagagaggtccatcgtattcc |
7475296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 6943675 - 6943732
Alignment:
| Q |
20 |
tatgtaactcttctctcatgtgacaccgtaatacacatcaaatccctcttttccaaca |
77 |
Q |
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| T |
6943675 |
tatgtaacccttctctcatgtgacaacctaatacacatcaaatcccccttttccaaca |
6943732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 94 - 155
Target Start/End: Complemental strand, 7475457 - 7475396
Alignment:
| Q |
94 |
tataagaatggaatcatatggtagttgcaatggcgttttctgtctccaaggtttgtgttggt |
155 |
Q |
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| T |
7475457 |
tataacaattgaatcatatggtagtttcaatggtgttttctgtctcaaaggtttgtgttggt |
7475396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 74
Target Start/End: Complemental strand, 7475533 - 7475474
Alignment:
| Q |
15 |
aaccctatgtaactcttctctcatgtgacaccgtaatacacatcaaatccctcttttcca |
74 |
Q |
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| T |
7475533 |
aaccctatataacccttctctcacgtgacaacctaatgcacatcaaatcccccttttcca |
7475474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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