View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9742_low_1 (Length: 392)
Name: NF9742_low_1
Description: NF9742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9742_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 16 - 382
Target Start/End: Complemental strand, 41542913 - 41542547
Alignment:
| Q |
16 |
agtttatgtcaaggggacgataaaccattaccctacaaacaaatctttcaagaattagtaaatatcagatcagggcaccagcttttaaacagtctcacat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41542913 |
agtttatgtcaaggggacgataaaccattaccctacaaacaaatctttcaagaattagtaaatatcagatcagggcaccagcttttaaacagtctcacat |
41542814 |
T |
|
| Q |
116 |
ctataagattgtgacaaactaaaccagagtacaatgaagaatcttagtaagattctgaccaaaggcttctgaataattctctattaagccccaagacaaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
41542813 |
ctataagattgtgacaaactaaaccagagtacaatgaagaatcttagtaagattctgaccaaaggcttctgaataattctctattaagccccaagacaga |
41542714 |
T |
|
| Q |
216 |
tacagactcgacattgacacagacatgtcaacacggtaaaatttgaaggnnnnnnntgaatgattgaatgtaatcacacgtcggtgtccaacaccgagat |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41542713 |
tacagactcgacattgacacagacatgtcaacacggtaaaatttgaaggaaaaaaatgaatgattgaatgtaatcacacgtcggtgtccaacaccgagat |
41542614 |
T |
|
| Q |
316 |
gtgccagacaccagacatggcttctatctgaagttatgaagcacaaacacagacacggacacaggtt |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
41542613 |
gtgccagacaccagacatggcttctatctgaagttatgaagcacaaacacagacacggacaccggtt |
41542547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 34 - 202
Target Start/End: Complemental strand, 41559036 - 41558872
Alignment:
| Q |
34 |
gataaaccattaccctacaaacaaatctttcaagaattagtaa-atatcagatcagggcaccagcttttaaacagtctcacatctataagattgtgacaa |
132 |
Q |
| |
|
|||| ||| |||||||||||| |||| ||| ||||||||| || ||| ||| ||| | || ||| |||||||| ||||| |||||||||||| ||| |
|
|
| T |
41559036 |
gatagacctttaccctacaaataaatattttaagaattagcaatatagcag-tcatgatactagcatttaaacaatctca--tctataagattgacgcaa |
41558940 |
T |
|
| Q |
133 |
actaaaccagagtacaatgaagaatcttagtaagattctgaccaaaggcttctgaataattctctattaa |
202 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| || | ||||||||| ||||||||||| |||||| |
|
|
| T |
41558939 |
actaaacctgagtacaatgaagaatcttagtaagtttat--acaaaggcttatgaataattctttattaa |
41558872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University