View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9742_low_10 (Length: 215)
Name: NF9742_low_10
Description: NF9742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9742_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 9e-97; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 15 - 197
Target Start/End: Original strand, 7488365 - 7488547
Alignment:
| Q |
15 |
catagggttttgtttcatgaaggatcatgagattaggactgtcagacatgtttatgtgcctccttttcagaaaggtggggttctgagtaagatcattcca |
114 |
Q |
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| T |
7488365 |
catagggttttgtttcatgaaggatcatgagattaggactatcagacatgtttatgtgcctccttttcagaaaggtggggttctgagtaagatcattcca |
7488464 |
T |
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| Q |
115 |
agaccgttgaacacatctaaaacccatcaatgaatttagaggaagccacaccaaaatctcagtctctaaatctattcctaaat |
197 |
Q |
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| T |
7488465 |
agaccgttgaacacatctaaaacccatcaatgaatttagaggaagccacaccaaaatctcagtctctaaatctattcctaaat |
7488547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 60 - 189
Target Start/End: Complemental strand, 7873275 - 7873146
Alignment:
| Q |
60 |
acatgtttatgtgcctccttttcagaaaggtggggttctgagtaagatcattccaagaccgttgaacacatctaaaacccatcaatgaatttagaggaag |
159 |
Q |
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| T |
7873275 |
acatgttcatctgccttcttttcataaaggtaggtttctgaataagatcattccaagaacgttcaacacatctaaaacgaatcaatgactttagaagaag |
7873176 |
T |
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| Q |
160 |
ccacaccaaaatctcagtctctaaatctat |
189 |
Q |
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| T |
7873175 |
tcacaccaaaatctccgtctctaaatctat |
7873146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 77 - 196
Target Start/End: Original strand, 7475563 - 7475682
Alignment:
| Q |
77 |
cttttcagaaaggtggggttctgagtaagatcattccaagaccgttgaacacatctaaaacccatcaatgaatttagaggaagccacaccaaaatctcag |
176 |
Q |
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| T |
7475563 |
cttttcagaaaggtgggggtctgaataagatcattccaagaacgttgaacaagtctaaagctcatcaatgactttaatggcagccacactaaaatctcaa |
7475662 |
T |
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| Q |
177 |
tctctaaatctattcctaaa |
196 |
Q |
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| T |
7475663 |
tctctaaatctattcctaaa |
7475682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 34 - 197
Target Start/End: Complemental strand, 6943659 - 6943496
Alignment:
| Q |
34 |
aaggatcatgagattaggactgtcagacatgtttatgtgcctccttttcagaaaggtggggttctgagtaagatcattccaagaccgttgaacacatcta |
133 |
Q |
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||||||||||||| ||||||| ||| ||| || ||||||| || ||||||||||| ||| ||||| |||| |||||||||| |||||||||||||| |
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| T |
6943659 |
aaggatcatgagactaggactatcatgcatattcatgtgccgccgtttcagaaaggcagggctctgaacaagaacattccaagatcgttgaacacatctg |
6943560 |
T |
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| Q |
134 |
aaacccatcaatgaatttagaggaagccacaccaaaatctcagtctctaaatctattcctaaat |
197 |
Q |
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||| ||||||||| ||||| || |||||| |||||||||| ||||||||||||| ||||||| |
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| T |
6943559 |
aaaagcatcaatgactttagtggcagccacgccaaaatctccgtctctaaatctaaccctaaat |
6943496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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