View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9742_low_2 (Length: 371)
Name: NF9742_low_2
Description: NF9742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9742_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 4284322 - 4284670
Alignment:
| Q |
1 |
agttttgataaggagagacctgatgagagaattgtgagaccgccattggtgtcttctagaagctctgtgattatgtgttcgtggaattgaagaaccattg |
100 |
Q |
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| T |
4284322 |
agttttgataaggagagacctgatgagagaattgtgaggccgccattggtgtcttctagaagctctgtgattatgtgttcgtggaattgaagaaccattg |
4284421 |
T |
|
| Q |
101 |
atgaataataatggatgcaaattgaagaagttcgaatttgatttgattgttactgagnnnnnnntttaggtttggaactgcaaattctcgaaggaatgaa |
200 |
Q |
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| T |
4284422 |
atgaataataatggatgcaaattgaagaagttcgaatttgatttgattattactgag-aaaaaatttaggttttgaactgcaaattctcgaaggaatgaa |
4284520 |
T |
|
| Q |
201 |
gcattccaagtttcaactgtaaaaccagtgaaccgcgaaaatgtgaactgcgaaactgtgcccgcgaaattgtaaagaaacttgttattgggagtagtgc |
300 |
Q |
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| T |
4284521 |
gcattccaagtttcaactgcaaaaccagtgaaccgcgaaaatgtgaactgcgaaactgtgcccgcgaaattgtgaagaaacttgttatttggagtagtgc |
4284620 |
T |
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| Q |
301 |
tattagtacactctttgttttgnnnnnnngctaatacaccttcttattgttgaaa |
355 |
Q |
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| T |
4284621 |
tattagtacactctttttttt-----tttgctaatacaccttcttattgttgaaa |
4284670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 100
Target Start/End: Original strand, 23429422 - 23429478
Alignment:
| Q |
44 |
cattggtgtcttctagaagctctgtgattatgtgttcgtggaattgaagaaccattg |
100 |
Q |
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||||||||||||||||||| | |||||||||| | |||||||||||||||||||| |
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| T |
23429422 |
cattggtgtcttctagaagttaagtgattatgtttgtgtggaattgaagaaccattg |
23429478 |
T |
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