View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9742_low_4 (Length: 289)
Name: NF9742_low_4
Description: NF9742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9742_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 93 - 275
Target Start/End: Original strand, 34420162 - 34420344
Alignment:
| Q |
93 |
tcttaaatgtaagaattgttcttctgttggtctagtatttattgtgaaattgttgttcaggaaactgaggagatgattgctgatgttcttggagttgaag |
192 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
34420162 |
tcttaaatgtaagaattgttctaatgttggtctagtatttattgtgaaattgttgttcaggaaactgaggagctgattgctgatgttcttggagttgaag |
34420261 |
T |
|
| Q |
193 |
ttttcaggcagacagttggtggtaacgttctttctggcagttactgtgctctgtccaacagaggtggtttggtaggtgcaaga |
275 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34420262 |
ttttcaggcagacagttggtggtaatattctttctggcagttactgtgctctgtccaacagaggtggtttggtaggtgcaaga |
34420344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 106 - 275
Target Start/End: Original strand, 34424311 - 34424480
Alignment:
| Q |
106 |
aattgttcttctgttggtctagtatttattgtgaaattgttgttcaggaaactgaggagatgattgctgatgttcttggagttgaagttttcaggcagac |
205 |
Q |
| |
|
|||||||||||| |||||| |||||||| | |||||||||||||||||||||||||||| || |||| |||||||||||||| ||||| || |||||||| |
|
|
| T |
34424311 |
aattgttcttctcttggtcaagtatttactatgaaattgttgttcaggaaactgaggaggtggttgcagatgttcttggagtagaagtatttaggcagac |
34424410 |
T |
|
| Q |
206 |
agttggtggtaacgttctttctggcagttactgtgctctgtccaacagaggtggtttggtaggtgcaaga |
275 |
Q |
| |
|
||||| |||||| ||||| || |||||||||||| | || |||| ||||||||||||| |||||||| |
|
|
| T |
34424411 |
agttgctggtaatattcttgtgggaagttactgtgctttttcgaacaaaggtggtttggtaagtgcaaga |
34424480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 145 - 265
Target Start/End: Original strand, 24347415 - 24347535
Alignment:
| Q |
145 |
ttgttcaggaaactgaggagatgattgctgatgttcttggagttgaagttttcaggcagacagttggtggtaacgttctttctggcagttactgtgctct |
244 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||| ||||| ||||||||||||||||| ||| ||| || ||||| ||| |||| |||||||| |
|
|
| T |
24347415 |
ttgttcaggaaactgaggagataattgcagatgttctcggagtagaagttttcaggcagaccattgctggcaatattcttgttggtagtttttgtgctct |
24347514 |
T |
|
| Q |
245 |
gtccaacagaggtggtttggt |
265 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
24347515 |
ctccaacagaggtggtttggt |
24347535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University