View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9743_high_12 (Length: 238)
Name: NF9743_high_12
Description: NF9743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9743_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 127 - 220
Target Start/End: Complemental strand, 34552806 - 34552713
Alignment:
| Q |
127 |
gtcatgttgtttccaactatttaattagggcattcattaactcgttttgcaagcaattcaataggaattcatcaatttattgtaaatatctagt |
220 |
Q |
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| T |
34552806 |
gtcatgttgtttccaactatttaattagggcatttattaacttgttttgtaagcaattcaatagaaattcatcaatttatcgtaaatatctagt |
34552713 |
T |
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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 12 - 50
Target Start/End: Complemental strand, 34552923 - 34552885
Alignment:
| Q |
12 |
agagaacatacttgaagcagaatccgtttgttacaactt |
50 |
Q |
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| T |
34552923 |
agagaacatacttgaagtagaatccgtttgttacaactt |
34552885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 189
Target Start/End: Complemental strand, 44561013 - 44560967
Alignment:
| Q |
143 |
ctatttaattagggcattcattaactcgttttgcaagcaattcaata |
189 |
Q |
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| T |
44561013 |
ctatttaattagggcatttattaacttgttttgcaagtaatacaata |
44560967 |
T |
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