View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9743_high_2 (Length: 415)
Name: NF9743_high_2
Description: NF9743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9743_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 20 - 348
Target Start/End: Original strand, 32506667 - 32506992
Alignment:
| Q |
20 |
tcagaataacacatgatggtaggnnnnnnnctaggctaatgtcaaaggaaacctcaaatgccaactcatcttcaaggagagtgttctattatggtgaaac |
119 |
Q |
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| T |
32506667 |
tcagaataacacaagatggtaggtttttttctaggctaatgtccaaggaaacctcaaatgccaactcatcttcaaggagagttttctattatggtgaaac |
32506766 |
T |
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| Q |
120 |
atctgttgctgttcctttcatgtgggaagcacaaccaggaacacctaaacatcctttgtcagaaacttctctgcctcctctcacacctccaccttcatat |
219 |
Q |
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| T |
32506767 |
atctgttgctgttcctttcatgtgggaggcacaaccaggaacacctaaacatcctttgtcagaaacttctctgcctcctctcacacctccaccttcatat |
32506866 |
T |
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| Q |
220 |
tctagtactaattacaagtccaatggtaagagaagaaattcaaaagtcaacaacatattttttaccattttgcctaggcttgtaggttcaaggaaatctc |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32506867 |
tctagtactaattacaagtccaatggtaagagaagaaattcaaaagtcaacaacatattttttaccattttgcctaggcttgtaggttcaaggaaatctc |
32506966 |
T |
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| Q |
320 |
ataataatgtgtcaccttcttcatcttca |
348 |
Q |
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|||||||||||||||||||||||||| |
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| T |
32506967 |
---ataatgtgtcaccttcttcatcttca |
32506992 |
T |
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