View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9743_high_4 (Length: 411)
Name: NF9743_high_4
Description: NF9743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9743_high_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 353; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Complemental strand, 4904183 - 4903791
Alignment:
| Q |
1 |
caactgaacccaaacagaaaaacacgtaacaaacagaccaactacaaacaatcctaaagaagcagcttagaagctaactgcctacaccagaaccgaaaac |
100 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4904183 |
caacagaacccaaacagaaaaacacctaacaaacagaccaactacaatcattcctaaagaagcagcttagaagctaactgcctacaccagaaccgaaaac |
4904084 |
T |
|
| Q |
101 |
cagcaccgcaacagactgttaagccagagaaacacgactacagaacaaccagaaggccaccaaacagccacacagccaaagaagccagcatcaccgcaac |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4904083 |
cagcaccgcaacagactgttaaaccagagaaacacgactacagaacaaccagaaggccaccaaacagccacacagccaaagaagccagcatcaccgcaac |
4903984 |
T |
|
| Q |
201 |
aaacaatccttcggattccaattccactcataaaacaaacacgcgtatgaattcaacctacccaaaaaccacctccaagacaacaccttaacagattcca |
300 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
4903983 |
aaacaatccttcagattccaattccactcataaaacaaaaacgcgtacgaattcaacctacccaaaaaccatctccaagacaacaccttaacagattcca |
4903884 |
T |
|
| Q |
301 |
acaactcctccacatctgtcacaacattgttgaaaattctgtcattcctcgctttccaaatactccaaattgcagcatgccaaattaatctac |
393 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4903883 |
acagctcctccacatctgtcacaacattgttgaaaattctgtcattcctcgctttccaaatactccaaattgcagcatgccaaattaatctac |
4903791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 186 - 301
Target Start/End: Complemental strand, 1557474 - 1557359
Alignment:
| Q |
186 |
cagcatcaccgcaacaaacaatccttcggattccaattccactcataaaacaaacacgcgtatgaattcaacctacccaaaaaccacctccaagacaaca |
285 |
Q |
| |
|
|||| ||| ||||||| ||||| |||||||||||||||||| || ||||||||||| || | |||| ||||||||| |||||||||| ||||| | |
|
|
| T |
1557474 |
cagcctcaacgcaacagacaattcttcggattccaattccattcgtaaaacaaacaagctggcaagctcaatctacccaaacaccacctccacgacaata |
1557375 |
T |
|
| Q |
286 |
ccttaacagattccaa |
301 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
1557374 |
ccttaattgattccaa |
1557359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 361
Target Start/End: Original strand, 12123866 - 12123902
Alignment:
| Q |
325 |
cattgttgaaaattctgtcattcctcgctttccaaat |
361 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
12123866 |
cattattgaaaattctgtcattcctagctttccaaat |
12123902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 69 - 393
Target Start/End: Original strand, 22153441 - 22153766
Alignment:
| Q |
69 |
agaagctaactgcctacaccagaaccgaaaaccagcaccgcaacagactgtta-agccagagaaacacgactacagaacaaccagaaggccaccaaacag |
167 |
Q |
| |
|
||||||||||||| ||||||| ||| ||||||||||||| ||| ||||||||| | |||||||||| ||||| || |||||||||||||| ||||||||| |
|
|
| T |
22153441 |
agaagctaactgcatacaccataactgaaaaccagcaccacaatagactgttataaccagagaaacgcgactgcataacaaccagaaggcgaccaaacag |
22153540 |
T |
|
| Q |
168 |
ccacacagccaaagaagccagcatcaccgcaacaaacaatccttcggattccaattccactcataaaacaaacacgcgtatgaattcaacctacccaaaa |
267 |
Q |
| |
|
|| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
22153541 |
ccgcacaaccaaagaagccagcatcaccgcaacaaacaaaccttcggattccaattccactcataaaacaaacacgcgtgcgaattcaacctacccaaaa |
22153640 |
T |
|
| Q |
268 |
accacctccaagacaacaccttaacagattccaacaactcctccacatctgtcacaacattgttgaaaattctgtcattcctcgctttccaaatactcca |
367 |
Q |
| |
|
| |||||||||||||||||||||| ||||||||||| || ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
22153641 |
atcacctccaagacaacaccttaaaagattccaacagcttctccacatctgtcacaatattgttgaaaattatgtcattcctcgctttccaaatactcca |
22153740 |
T |
|
| Q |
368 |
aattgcagcatgccaaattaatctac |
393 |
Q |
| |
|
|||||| ||||||||||||||||||| |
|
|
| T |
22153741 |
aattgcggcatgccaaattaatctac |
22153766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 69 - 393
Target Start/End: Original strand, 22209356 - 22209681
Alignment:
| Q |
69 |
agaagctaactgcctacaccagaaccgaaaaccagcaccgcaacagactgtta-agccagagaaacacgactacagaacaaccagaaggccaccaaacag |
167 |
Q |
| |
|
||||||||||||| ||||||| ||| ||||||||||||| ||| ||||||||| | |||||||||| ||||| || |||||||||||||| ||||||||| |
|
|
| T |
22209356 |
agaagctaactgcatacaccataactgaaaaccagcaccacaatagactgttataaccagagaaacgcgactgcataacaaccagaaggcgaccaaacag |
22209455 |
T |
|
| Q |
168 |
ccacacagccaaagaagccagcatcaccgcaacaaacaatccttcggattccaattccactcataaaacaaacacgcgtatgaattcaacctacccaaaa |
267 |
Q |
| |
|
|| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
22209456 |
ccgcacaaccaaagaagccagcatcaccgcaacaaacaaaccttcggattccaattccactcataaaacaaacacgcgtgcgaattcaacctacccaaaa |
22209555 |
T |
|
| Q |
268 |
accacctccaagacaacaccttaacagattccaacaactcctccacatctgtcacaacattgttgaaaattctgtcattcctcgctttccaaatactcca |
367 |
Q |
| |
|
| |||||||||||||||||||||| ||||||||||| || ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
22209556 |
atcacctccaagacaacaccttaaaagattccaacagcttctccacatctgtcacaatattgttgaaaattatgtcattcctcgctttccaaatactcca |
22209655 |
T |
|
| Q |
368 |
aattgcagcatgccaaattaatctac |
393 |
Q |
| |
|
|||||| ||||||||||||||||||| |
|
|
| T |
22209656 |
aattgcggcatgccaaattaatctac |
22209681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 188 - 241
Target Start/End: Original strand, 38185265 - 38185318
Alignment:
| Q |
188 |
gcatcaccgcaacaaacaatccttcggattccaattccactcataaaacaaaca |
241 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
38185265 |
gcatcaccgcaacaagcattccttcggattccaattccactcgtaaaacaaaca |
38185318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 191 - 385
Target Start/End: Complemental strand, 53562433 - 53562243
Alignment:
| Q |
191 |
tcaccgcaacaaacaatccttcggattccaattccactcataaaacaaacacgcgtatgaattcaacctacccaaaaaccacctccaagacaacacctta |
290 |
Q |
| |
|
|||||||| |||||| ||||| |||||||| |||||||| || |||||| |||| | || || || |||||| ||||||||||||||| ||||| |
|
|
| T |
53562433 |
tcaccgcatcaaacagtccttgggattccacttccactcgtagaacaaaaacgccggcaactttaatcttcccaaactccacctccaagacaaaaccttg |
53562334 |
T |
|
| Q |
291 |
acagattccaacaactcctccacatctgtcacaacattgttgaaaattctgtcattcctcgctttccaaatactccaaattgcagcatgccaaat |
385 |
Q |
| |
|
|| | ||||| ||||| || || | ||| |||| |||||||||||||| |||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
53562333 |
actg----caacagatcctcaacctcaataacagcattattgaaaattctgtcgttcctcgctttccatatactccaaataacagcatgccaaat |
53562243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 291
Target Start/End: Original strand, 43073753 - 43073787
Alignment:
| Q |
257 |
cctacccaaaaaccacctccaagacaacaccttaa |
291 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| |
|
|
| T |
43073753 |
cctacccaacaaccacctccaagacaacaccttaa |
43073787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University