View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9743_low_1 (Length: 463)
Name: NF9743_low_1
Description: NF9743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9743_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 19 - 448
Target Start/End: Original strand, 26105981 - 26106398
Alignment:
| Q |
19 |
gttacttacaagatcagtggagagacaatgctgtccttttctgtatgggaaaagtatgctggcaaggagcatttagcagattctattgggacttatgatt |
118 |
Q |
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| T |
26105981 |
gttacttacaagatcagtggagagacaatgctgtccttttctatatgggaaaagtatgctggcaaggagcatttagcagattctattgggacttatgatt |
26106080 |
T |
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| Q |
119 |
gaagagttttggattttaaattttatttctattatttgtagaattgttttaataatcaatcaacatagcaaagtggcatcataatgtgannnnnnnnnnn |
218 |
Q |
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| T |
26106081 |
gaagagttttggattttaaattttatttctattatttgtagaattgttttaat----aatcaacctagcaaagtggcatcataatgtga----tttttta |
26106172 |
T |
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| Q |
219 |
nnnnataatcatgttattagtgtgaattgtaagtattttctaattttatcgatgactaatttctgtcggtcggaaatttgactaccaatcaatattgatg |
318 |
Q |
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| T |
26106173 |
ttttataatcatgttattagtgtgaattgcaagtattttctaattttatcgatgactaatttct----gtcggaaacttgactaccgatcaatattgatg |
26106268 |
T |
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| Q |
319 |
gatatgtttttccaatcata--tatttttccatcaacaaggttcaacccgagactttattgaaaggatccgaccaattttgatggatatgtttttcccac |
416 |
Q |
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|||||||||||||||||||| | |||||||||||||||||||||| || |||||| ||||||| |||||||||||||||||||||||||||||||||| |
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| T |
26106269 |
gatatgtttttccaatcatatttttttttccatcaacaaggttcaa--cgcgactttgttgaaagaatccgaccaattttgatggatatgtttttcccac |
26106366 |
T |
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| Q |
417 |
tcggataatataatgttggtcatcatgatgtc |
448 |
Q |
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| T |
26106367 |
tcggataatataatgttggtcatcatgatgtc |
26106398 |
T |
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