View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9743_low_10 (Length: 333)
Name: NF9743_low_10
Description: NF9743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9743_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 29553112 - 29553431
Alignment:
| Q |
1 |
atgctgagatgtcctgatcccgcttgtggtgctgctgttgatcaagatacgattaatcttttagcatctgctgaagataaggagaagtatgatcgttatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29553112 |
atgctgagatgtcctgatcccgcttgtggtgctgctgttgatcaagatacaattaatcttttagcatctgctgaagataaggagaagtatgatcgttatc |
29553211 |
T |
|
| Q |
101 |
ttgttagatcttacattgaaaacaataaaaaggtatgtcgtaaagattcactttagacattgataatgata-taacaaatataaacttttatgtagtgtg |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||| |
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| T |
29553212 |
ttgttagatcttacattgaaaacaataaaaaggtatgtcgtaaagattcaacttagacattgataatgatagtaacagatataaatttttatgtagtgtg |
29553311 |
T |
|
| Q |
200 |
caatctgtgtataatctatatgttggctttctttttgggatgcattcatgataattctttttggtatgcattcatgataactctttgcgttatctttgtt |
299 |
Q |
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|||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
29553312 |
caatctgtgtataatctatatgttggctttttttttggtatgcattcatgataat--tttttggtatgcattcatgataattctttgcgttatctttgtt |
29553409 |
T |
|
| Q |
300 |
ttgtttagaccaagtgatgtcc |
321 |
Q |
| |
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|||| ||||||||||| ||||| |
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| T |
29553410 |
ttgtgtagaccaagtggtgtcc |
29553431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 29537991 - 29538252
Alignment:
| Q |
1 |
atgctgagatgtcctgatcccgcttgtggtgctgctgttgatcaagatacgattaatcttttagcatctgctgaagataaggagaagtatgatcgttatc |
100 |
Q |
| |
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||||||||||||||||||||||| |||| |||||| ||||||||||||| |||| || || ||||||||||||||||| |||||||||| ||||| | |
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| T |
29537991 |
atgctgagatgtcctgatcccgcctgtgctgctgccgttgatcaagatatgattgatgcatttgcatctgctgaagataaaaagaagtatgaacgttacc |
29538090 |
T |
|
| Q |
101 |
ttgttagatcttacattgaaaacaataaaaaggtatgtcgtaaagattcactttagacattgataa-tgatataacaa--atataaacttttatgtagtg |
197 |
Q |
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|||||||||||||||||||| |||||||||||||| || || ||||||| ||||||||| |||| ||| | | || ||||| |||||||||||||| |
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| T |
29538091 |
ttgttagatcttacattgaagtcaataaaaaggtatatcttagagattcaacttagacattaataattgacaaactaattatatatacttttatgtagtg |
29538190 |
T |
|
| Q |
198 |
tgcaatctgtgtataatctatatgttggctttctttttgggatgcattcatgataattcttt |
259 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
29538191 |
tgcaatctgtgtataatctatatgttggctttctttttggtatgcattcatgataattcttt |
29538252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 254 - 289
Target Start/End: Original strand, 29538221 - 29538256
Alignment:
| Q |
254 |
ttctttttggtatgcattcatgataactctttgcgt |
289 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||| |
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|
| T |
29538221 |
ttctttttggtatgcattcatgataattctttgcgt |
29538256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 42189265 - 42189525
Alignment:
| Q |
1 |
atgctgagatgtcctgatcccgcttgtggtgctgctgttgatcaagatacgattaatcttttagcatctgctgaagataaggagaagtatgatcgttatc |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||| | |
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| T |
42189265 |
atgctgagatgtcctgatcctgcttgtggtgctgctgttgatcaagatatgattaatcttttagcatctgctgaagataaacagaagtatgaccgttacc |
42189364 |
T |
|
| Q |
101 |
ttgttagatcttacattgaaaacaataaaaaggtatgtcgtaaagattcactttagacattgataatgata--taacaaatataaacttttatgtagtgt |
198 |
Q |
| |
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|| ||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||| || |||||| ||||||||||||||| |
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| T |
42189365 |
ttattagatcttacattgaagacaataaaaaggtatgtcgtagagattcaacttagacattgataatgatagtaaatgaatatatacttttatgtagtgt |
42189464 |
T |
|
| Q |
199 |
gcaatctgtgtataatctatatgttggctttctttttgggatgcattcatgataattcttt |
259 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||| |
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|
| T |
42189465 |
gcaatctgtgtataatctatactttggctttctttttgctatgcattcataataattcttt |
42189525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 5 - 136
Target Start/End: Original strand, 25207502 - 25207633
Alignment:
| Q |
5 |
tgagatgtcctgatcccgcttgtggtgctgctgttgatcaagatacgattaatcttttagcatctgctgaagataaggagaagtatgatcgttatcttgt |
104 |
Q |
| |
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||||||||||||| ||| ||||||| |||||| ||| |||||||| |||| || | ||||||| | ||||||||| || ||||||| ||||| ||| |
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| T |
25207502 |
tgagatgtcctgaacccacttgtggggctgctattggtcaagatatgattgatttattagcatgtaatgaagataaagaaaagtatgcccgttaccttcg |
25207601 |
T |
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| Q |
105 |
tagatcttacattgaaaacaataaaaaggtat |
136 |
Q |
| |
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||||||||| || ||| ||||||||||||||| |
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|
| T |
25207602 |
tagatcttatatcgaagacaataaaaaggtat |
25207633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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