View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9743_low_11 (Length: 277)
Name: NF9743_low_11
Description: NF9743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9743_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 247; Significance: 1e-137; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 17 - 271
Target Start/End: Complemental strand, 33909274 - 33909020
Alignment:
| Q |
17 |
gttatctcttgtggaatacttccattaagattattcttgcttgctatgaactcaaccacattagtccaagaagatactccaattggaattccaccagaaa |
116 |
Q |
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| T |
33909274 |
gttatctcttgtggaatacttccattaagattattcttgcttgctatgaactcaaccacattagtccaagaagatactccaattggaattccaccagaaa |
33909175 |
T |
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| Q |
117 |
attgattataacttatatccagaagtgaaatacttgatgacaaattttgaggaagctcaccattgaacttattatgacttatcataaaatacaccagatt |
216 |
Q |
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| T |
33909174 |
attgattataacttatatccaaaagtgaaatacttgatgacaaattttgaggaagctcaccattgaacttattatgacttatcataaaataccccagatt |
33909075 |
T |
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| Q |
217 |
ttcagatctccagagtccactaggaatgttaccgtaaaaatcgttcttgtaaatt |
271 |
Q |
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| T |
33909074 |
ttcagatctccagagtccactaggaatgttaccgtaaaaatcgttcttgtaaatt |
33909020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 17 - 271
Target Start/End: Complemental strand, 33885043 - 33884792
Alignment:
| Q |
17 |
gttatctcttgtggaatacttccattaagattattcttgcttgctatgaactcaaccacattagtccaagaagatactccaattggaattccaccagaaa |
116 |
Q |
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| T |
33885043 |
gttaactcttgaggaatacttccattaagataattcttgcttgctataaactcaaccacactagtccaagaagatactccaattggaattccaccataaa |
33884944 |
T |
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| Q |
117 |
attgattataacttatatccagaagtgaaatacttgatgacaaattttgaggaagctcaccattgaacttattatgacttatcataaaatacaccagatt |
216 |
Q |
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| T |
33884943 |
attgattgtaacttatatcaaaaactgaaatacttgaagacaaattttgaggaatttcaccattgaacttattatgacttatcatgaaaatcaccaaa-- |
33884846 |
T |
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| Q |
217 |
ttcagatctccagagtccactaggaatgttaccgtaaaaatcgttcttgtaaatt |
271 |
Q |
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| T |
33884845 |
ttcatat-tccaaagtccactaggaattttaccagaaaattcattcttgtaaatt |
33884792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 17 - 198
Target Start/End: Original strand, 33896229 - 33896410
Alignment:
| Q |
17 |
gttatctcttgtggaatacttccattaagattattcttgcttgctatgaactcaaccacattagtccaagaagatactccaattggaattccaccagaaa |
116 |
Q |
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|||| |||||| |||||||||||||| |||| ||||||||||||||| |||| ||| | ||||||||||||||||||||||||||||||||||||| ||| |
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| T |
33896229 |
gttaactcttgaggaatacttccattgagataattcttgcttgctataaacttaactagattagtccaagaagatactccaattggaattccaccataaa |
33896328 |
T |
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| Q |
117 |
attgattataacttatatccagaagtgaaatacttgatgacaaattttgaggaagctcaccattgaacttattatgacttat |
198 |
Q |
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| T |
33896329 |
attgattgtaacttatatcaaaaagtgaaatacttgaagaaaagttttgaggcatttcaccagtgaacttattatgacttat |
33896410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 81 - 132
Target Start/End: Complemental strand, 33916054 - 33916003
Alignment:
| Q |
81 |
tccaagaagatactccaattggaattccaccagaaaattgattataacttat |
132 |
Q |
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| T |
33916054 |
tccaagaagaaactccatttggaattctaccagaaaaccgattataacttat |
33916003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 123
Target Start/End: Original strand, 24792313 - 24792365
Alignment:
| Q |
71 |
accacattagtccaagaagatactccaattggaattccaccagaaaattgatt |
123 |
Q |
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| T |
24792313 |
accacattagtccatgaagatacaccagatggaattctaccagaaaactgatt |
24792365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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