View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9743_low_12 (Length: 270)
Name: NF9743_low_12
Description: NF9743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9743_low_12 |
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| [»] scaffold0425 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 14)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 6238466 - 6238209
Alignment:
| Q |
1 |
tacaacgctttctttcaggttctatcaatcgatttgaatctaggattaaagtattgctcgagaggctagagtttcttgcaaatcaaaaggatagattgca |
100 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
6238466 |
tacaacgctatctttcaggttctatcaatcgatttgaatctaggattaaagtattgctcaagaggttagagtttcttgcaaatcaaaaggatagattgca |
6238367 |
T |
|
| Q |
101 |
acttcatagttcttattattatgaagatggagccagcgattttgctact---tcattcatggctgaatctatcgtatatggtagagagcgtgaaaaggag |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
6238366 |
acttcatagttcttattattatgaagatggagccagcgattttgctacttcatcattcatggctgaatctatcgtatatggtagagagcgtgaaaaagag |
6238267 |
T |
|
| Q |
198 |
gaaatagtcgaatttttactttcagacagttataatttgttcttaaaattattaaaat |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6238266 |
gaaatagtcgaatttttactttcagacagttataatttgttcttaaaattattaaaat |
6238209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 6259961 - 6259727
Alignment:
| Q |
1 |
tacaacgctttctttcaggttctatcaatcgatttgaatctaggattaaagtattgctcgagaggctagagtttcttgcaaatcaaaaggatagattgca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||| | |
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| T |
6259961 |
tacaacgctttctttcaggttctatcaatcgatttgaatctaggattaaagtattgcttaagaggctagagtttcttgcaatggaaaaatctagattgga |
6259862 |
T |
|
| Q |
101 |
acttcat-agtt--cttattatt---atgaagatggagccagcgattttgctacttcattcatggctgaatctatcgtatatggtagagagcgtgaaaag |
194 |
Q |
| |
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|||||| |||| || |||||| ||||||| ||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||| |||||||| |
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|
| T |
6259861 |
acttcaagagtttactaattatttatatgaagaaagagccagcggtttcgctacttcattcatggctgaatctatcatatatggtagagaacgtgaaaaa |
6259762 |
T |
|
| Q |
195 |
gaggaaatagtcgaatttttactttcagacagtta |
229 |
Q |
| |
|
||||||||| || |||||||||||||||||||||| |
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|
| T |
6259761 |
gaggaaataatcaaatttttactttcagacagtta |
6259727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 6169698 - 6169466
Alignment:
| Q |
1 |
tacaacgctttctttcaggttctatcaatcgatttgaatctaggattaaagtattgctcgagaggctagagtttcttgcaaatcaaaaggatagattgca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| || |||||||||| ||||| ||||||||||| |
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|
| T |
6169698 |
tacaacgctttctttcaggttctatcaatcgatttgaatctaggattaaagtattgatcaagaggctaaaggttcttgcaaaacaaaatgatagattgca |
6169599 |
T |
|
| Q |
101 |
acttcat-ag--ttcttattattatgaagatggagccagcgattttg---ctacttcattcatggctgaatctatcgtatatggtagagagcgtgaaaag |
194 |
Q |
| |
|
||||||| || || || |||| ||||||||||||||||| |||||| || | ||||||||| |||||||||| ||||||||||||||| ||| || |
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|
| T |
6169598 |
acttcatcaggattattgttatcatgaagatggagccagcaattttggaacttcatcattcatgaatgaatctatcatatatggtagagagcatgagaaa |
6169499 |
T |
|
| Q |
195 |
gaggaaatagtcgaatttttactttcagacagt |
227 |
Q |
| |
|
|| |||||| | || |||||||||||| ||||| |
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|
| T |
6169498 |
gaagaaataattgattttttactttcatacagt |
6169466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 6246097 - 6245862
Alignment:
| Q |
1 |
tacaacgctttctttcaggttctatcaatcgatttgaatctaggattaaagtattgctcgagaggctagagtttcttgcaaatcaaaaggatagattgca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||| |||| |
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|
| T |
6246097 |
tacaacgctttctttcaggttctatcaatcgatttgaatctaggattaaagtattgctcaagaggctagagtttcttgcagatcaaaagaatatattggg |
6245998 |
T |
|
| Q |
101 |
acttca------tagttcttattattatgaagatggagccagc-gatttt--gctacttcattcatggctgaatctatcgtatatggtagagagcgtgaa |
191 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||| |||||| || | || || ||||||||||| | ||||||||||||||| ||| |
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|
| T |
6245997 |
acttcacgaattaagtcgttattattatgaagatggagccagcagattttcaactgcatctttggtggctgaatctgtgatatatggtagagagcatgag |
6245898 |
T |
|
| Q |
192 |
aaggaggaaatagtcgaatttttactttcagacagt |
227 |
Q |
| |
|
|| || |||||| | ||||||||||||||||||||| |
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|
| T |
6245897 |
aaagaagaaataattgaatttttactttcagacagt |
6245862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 6266480 - 6266414
Alignment:
| Q |
1 |
tacaacgctttctttcaggttctatcaatcgatttgaatctaggattaaagtattgctcgagaggct |
67 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |
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|
| T |
6266480 |
tacaacgctttctttcaggttctatcaatcggtttgaatctaggattaaagtattgctcaagaggct |
6266414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 93
Target Start/End: Complemental strand, 5250940 - 5250874
Alignment:
| Q |
27 |
aatcgatttgaatctaggattaaagtattgctcgagaggctagagtttcttgcaaatcaaaaggata |
93 |
Q |
| |
|
|||| |||||||||||||||||||| |||||| |||| |||||| ||||||||||| |||||||||| |
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|
| T |
5250940 |
aatccatttgaatctaggattaaagaattgctagagaagctagaatttcttgcaaagcaaaaggata |
5250874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 92
Target Start/End: Complemental strand, 6143107 - 6143020
Alignment:
| Q |
5 |
acgctttctttcaggttctatcaatcgatttgaatctaggattaaagtattgctcgagaggctagagtttcttgcaaatcaaaaggat |
92 |
Q |
| |
|
|||||||||||| | || ||| ||||||||||||||||| ||||||||| |||| ||||||||||||| | |||| |||||||||| |
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|
| T |
6143107 |
acgctttctttctgcttttattaatcgatttgaatctagaattaaagtaatgctgaagaggctagagttccgtgcaggtcaaaaggat |
6143020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 87
Target Start/End: Complemental strand, 6900873 - 6900818
Alignment:
| Q |
32 |
atttgaatctaggattaaagtattgctcgagaggctagagtttcttgcaaatcaaa |
87 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| ||||| ||||| |||||| |
|
|
| T |
6900873 |
atttgaatctaggattaaagtattgctgaagaggctaaagtttattgcagatcaaa |
6900818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 98
Target Start/End: Original strand, 6590591 - 6590687
Alignment:
| Q |
5 |
acgctttctttcaggttctatcaatcga---tttgaatctaggattaaagtattgctcgagaggctagagtttcttgcaaatcaaaaggatagattg |
98 |
Q |
| |
|
||||||||||||| ||| ||| |||||| |||||| |||||||||||| |||| | ||| ||||||||||||||| |||||||||||| |||| |
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|
| T |
6590591 |
acgctttctttcacgttttattaatcgaggatttgaagctaggattaaagcattgatacagaacctagagtttcttgcagatcaaaaggataaattg |
6590687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 13269837 - 13269917
Alignment:
| Q |
9 |
tttctttcaggttctatcaatcgatttgaatctaggattaaagtattgctcgagaggctagagtttcttgcaaatcaaaag |
89 |
Q |
| |
|
|||||||| | || ||| ||||||||||||||||| ||||||| | ||| |||||||||| |||||||||| ||| |||| |
|
|
| T |
13269837 |
tttctttctgcttttattaatcgatttgaatctagaattaaagcttcgctggagaggctagtgtttcttgcagatctaaag |
13269917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 227
Target Start/End: Original strand, 6590755 - 6590810
Alignment:
| Q |
172 |
tatatggtagagagcgtgaaaaggaggaaatagtcgaatttttactttcagacagt |
227 |
Q |
| |
|
||||||||||||||| ||| || ||||||||| | |||||||||||||||||||| |
|
|
| T |
6590755 |
tatatggtagagagcatgagaaagaggaaataattaaatttttactttcagacagt |
6590810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 227
Target Start/End: Complemental strand, 6917734 - 6917679
Alignment:
| Q |
172 |
tatatggtagagagcgtgaaaaggaggaaatagtcgaatttttactttcagacagt |
227 |
Q |
| |
|
||||||||||||||| ||| || ||||||||| | ||||||||||| ||||||||| |
|
|
| T |
6917734 |
tatatggtagagagcatgagaaagaggaaataattgaatttttactatcagacagt |
6917679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 93
Target Start/End: Original strand, 4388195 - 4388261
Alignment:
| Q |
27 |
aatcgatttgaatctaggattaaagtattgctcgagaggctagagtttcttgcaaatcaaaaggata |
93 |
Q |
| |
|
|||| ||||||||||||||| |||| |||||| |||| | |||| |||||||| || |||||||||| |
|
|
| T |
4388195 |
aatccatttgaatctaggatcaaagaattgctagagaagttagaatttcttgcgaagcaaaaggata |
4388261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 89
Target Start/End: Complemental strand, 5268827 - 5268765
Alignment:
| Q |
27 |
aatcgatttgaatctaggattaaagtattgctcgagaggctagagtttcttgcaaatcaaaag |
89 |
Q |
| |
|
|||| |||||| |||||||| |||| |||||| |||| |||||| ||||||||||| |||||| |
|
|
| T |
5268827 |
aatccatttgagtctaggatcaaagaattgctagagaagctagaatttcttgcaaaacaaaag |
5268765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 150 - 224
Target Start/End: Original strand, 35139802 - 35139876
Alignment:
| Q |
150 |
tcattcatggctgaatctatcgtatatggtagagagcgtgaaaaggaggaaatagtcgaatttttactttcagac |
224 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |||||||| ||||||||| || |||||||| |||||||| |
|
|
| T |
35139802 |
tcattcatggctgaatctatcatatatggtagagaacgtgaaaaagaggaaataatcaaatttttattttcagac |
35139876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 98
Target Start/End: Original strand, 13154 - 13222
Alignment:
| Q |
30 |
cgatttgaatctaggattaaagtattgctcgagaggctagagtttcttgcaaatcaaaaggatagattg |
98 |
Q |
| |
|
||||| |||||||||| |||||||||||| |||| ||||||| |||||| |||||||||||| |||| |
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|
| T |
13154 |
cgattggaatctaggagtaaagtattgctgaggaggttagagttccttgcagatcaaaaggatatattg |
13222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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