View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9743_low_2 (Length: 440)
Name: NF9743_low_2
Description: NF9743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9743_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 8e-99; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 36 - 237
Target Start/End: Original strand, 4094205 - 4094409
Alignment:
| Q |
36 |
aaaccttcaataccggaatgaaagattccaaagccaaagagataaagataattattgattggagtaagatcatatacattgagatacaccatagcacgag |
135 |
Q |
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| T |
4094205 |
aaaccttcaataccggaatgaaagattccaaagccaaagagataaagataattattgattggagtaagatcatatacattgagatacaccatagcacgag |
4094304 |
T |
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| Q |
136 |
aagcattctgagtgttccggtggtccctttcggagcttgtactcaattgaaaccaccgcattgtccaattatgaatcaaagtttcat---ttatgttatg |
232 |
Q |
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| T |
4094305 |
aagtattctgagtgttccggtggtccctttcggagcttgtactcaattgaaaccaccgcattgtccaattatgaatcacagtttcattaattatgttatg |
4094404 |
T |
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| Q |
233 |
cagtg |
237 |
Q |
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||||| |
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| T |
4094405 |
cagtg |
4094409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 289 - 423
Target Start/End: Original strand, 4094475 - 4094609
Alignment:
| Q |
289 |
gaaacttacgagacagacagacagagtggaggatctgatatgaattaattgtgtcaagttcgtaagttgaaatcacactgactttagattttagatttcg |
388 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4094475 |
gaaacttacgagacagacatacagagtggaggatctgatatgaattaattgtgtcaagttcgtaagttgaaatcacactgactttagattttagatttcg |
4094574 |
T |
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| Q |
389 |
atttggtttctgtcctttcgccgtcatcattatct |
423 |
Q |
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| T |
4094575 |
atttgggttctgtcctttcgccgtcatcattatct |
4094609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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