View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9743_low_3 (Length: 423)
Name: NF9743_low_3
Description: NF9743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9743_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 335; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 20 - 411
Target Start/End: Original strand, 16944058 - 16944452
Alignment:
| Q |
20 |
agaagcaggattgcagctcaccatattgaatctctcgataatatcatttgcatttcttctggtgcatcactaatccctttgaggtttcagtgaattctat |
119 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16944058 |
agaagcaggaatgcagctcaccatattgaatctctcgataatatattttgcatttcttctggtgcatcactaatccctttgaggtttcagtgaattctat |
16944157 |
T |
|
| Q |
120 |
tccaaggaagtatggtaactttcccaaataagtcatgtccaattctttcatcatttgtcttctgaattcttgtatctctaagctaaattgcttctagtta |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
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| T |
16944158 |
tccaaggaagtatggtaactttcccaaataagtcatgtccaattctttcatcatttgtcttttgaattcttgtatatctaagctaaattgcttctagtta |
16944257 |
T |
|
| Q |
220 |
ccactaaatcatcaacatatagatagataagcacaggattataacctttgttattcttcaaatacagaccatattcaactttgcattcgacaaattcttg |
319 |
Q |
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||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
16944258 |
ccactaaattatcaacatatagatagataagcacaagattataacctttgttatttttcaaatacagaccatattcaactttgcattcaacaaattcttg |
16944357 |
T |
|
| Q |
320 |
ttc----aattggaaagttgacaatctttttgttctaggctcttggagcttgctttgatccatacaaagctttgtgcagtcaaagttggtgaccta |
411 |
Q |
| |
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||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16944358 |
ttcaattaattggaaagttgacaatc-ttttgttctaggctcttggagcttgctttgatccatacaaagctttgtgcagtcaaagttggtgaccta |
16944452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 20 - 411
Target Start/End: Original strand, 17014723 - 17015117
Alignment:
| Q |
20 |
agaagcaggattgcagctcaccatattgaatctctcgataatatcatttgcatttcttctggtgcatcactaatccctttgaggtttcagtgaattctat |
119 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17014723 |
agaagcaggaatgcagctcaccatattgaatctctcgataatatattttgcatttcttctggtgcatcactaatccctttgaggtttcagtgaattctat |
17014822 |
T |
|
| Q |
120 |
tccaaggaagtatggtaactttcccaaataagtcatgtccaattctttcatcatttgtcttctgaattcttgtatctctaagctaaattgcttctagtta |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
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| T |
17014823 |
tccaaggaagtatggtaactttcccaaataagtcatgtccaattctttcatcatttgtcttttgaattcttgtatatctaagctaaattgcttctagtta |
17014922 |
T |
|
| Q |
220 |
ccactaaatcatcaacatatagatagataagcacaggattataacctttgttattcttcaaatacagaccatattcaactttgcattcgacaaattcttg |
319 |
Q |
| |
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||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
17014923 |
ccactaaattatcaacatatagatagataagcacaagattataacctttgttatttttcaaatacagaccatattcaactttgcattcaacaaattcttg |
17015022 |
T |
|
| Q |
320 |
ttc----aattggaaagttgacaatctttttgttctaggctcttggagcttgctttgatccatacaaagctttgtgcagtcaaagttggtgaccta |
411 |
Q |
| |
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||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17015023 |
ttcaattaattggaaagttgacaatc-ttttgttctaggctcttggagcttgctttgatccatacaaagctttgtgcagtcaaagttggtgaccta |
17015117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 74 - 385
Target Start/End: Original strand, 15490481 - 15490790
Alignment:
| Q |
74 |
tcttctggtgcatcactaatccctttgaggtttcagtgaattctattccaaggaagtatggtaactttcccaaataagtcatgtccaattctttcatcat |
173 |
Q |
| |
|
||||||| |||||| |||| || ||| | |||| | ||||||| ||| ||||||||||| |||||||||||||| || ||| || |||||| ||||||| |
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|
| T |
15490481 |
tcttctgatgcatccctaaaccttttaaagtttaattgaattccatttcaaggaagtatattaactttcccaaatcagccatatcaaattctctcatcat |
15490580 |
T |
|
| Q |
174 |
ttgtcttctgaattcttgtatctctaagctaaattgcttctagttaccactaaatcatcaacatatagatagataagcacaggattataacctttgttat |
273 |
Q |
| |
|
||||||| ||||||||| | |||| | || |||| ||| ||||||||| |||||||||||||||||| | ||||||| |||| ||||||||||| |
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|
| T |
15490581 |
ttgtcttatgaattcttctttctcaat--tatattggttccagttaccacgaaatcatcaacatatagacaaataagcatcagatttctacctttgttat |
15490678 |
T |
|
| Q |
274 |
tcttcaaatacagaccatattcaactttgcattcgacaaattcttgttcaattggaaagttgacaatctttttgttctaggctcttggagcttgctttga |
373 |
Q |
| |
|
|||||| ||||| || ||||||||||||||||| ||||||||| | || || | |||||||| |||| ||||| | | ||||||||||||||| | |
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|
| T |
15490679 |
tcttcacatacaaacaatattcaactttgcatttgacaaattcctattgaactagaaagttgtcaattcaattgtttcacgttcttggagcttgcttaaa |
15490778 |
T |
|
| Q |
374 |
tccatacaaagc |
385 |
Q |
| |
|
|||||||||||| |
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| T |
15490779 |
tccatacaaagc |
15490790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 71 - 364
Target Start/End: Complemental strand, 9817045 - 9816753
Alignment:
| Q |
71 |
atttcttctggtgcatcactaatccctttgaggtttcagtgaattctattccaaggaagtatggtaactttcccaaataagtcatgtccaattctttcat |
170 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||| |||| |||| |||||||| ||||||||| || |||||||| |
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|
| T |
9817045 |
atttcttctagtgcatcactaatccctttgaggttttagtgaattctattccaaagaaatatgttaaccttcccaaaccagtcatgtcaaactctttcat |
9816946 |
T |
|
| Q |
171 |
catttgtcttctgaattcttgtatctctaagctaaattgcttctagttaccactaaatcatcaacatatagatagataagcacaggattataacctttgt |
270 |
Q |
| |
|
|||||||||| ||||||| | || ||| || |||||||||| |||| |||||||||||||| |||| ||||||||| ||| || ||| | |||| |
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| T |
9816945 |
catttgtcttttgaattcatctacctc--agataaattgctttcagttttcactaaatcatcaaaatattgatagataaacaccacataatagcatttgc |
9816848 |
T |
|
| Q |
271 |
tattcttcaaatacagaccatattcaactttgcattcg-acaaattcttgttcaattggaaagttgacaatctttttgttctaggctcttggagc |
364 |
Q |
| |
|
||||||||| ||||| | ||| |||| ||||| ||| | | ||| |||| || || | |||||||| ||||| |||||||| |||||||| |||| |
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|
| T |
9816847 |
tattcttcacatacataacattttcatctttgtatttgaaaaaaatcttcttgaactagaaagttgtcaatccttttgttccaggctcttagagc |
9816753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 71 - 381
Target Start/End: Complemental strand, 1831732 - 1831421
Alignment:
| Q |
71 |
atttcttctggtgcatcactaatccctttgaggtttcagtgaattctattccaaggaagtatggtaactttcccaaataagtcatgtccaattctttcat |
170 |
Q |
| |
|
|||||||||||||||||||||| | | ||| |||| ||||||||| |||||| |||| |||| |||||||||||||| |||||| || |||||| |||| |
|
|
| T |
1831732 |
atttcttctggtgcatcactaaacattctgaagttttagtgaattccattccagggaaatatgttaactttcccaaatcagtcatctcaaattctgtcat |
1831633 |
T |
|
| Q |
171 |
catttgtcttctgaattcttgtatctctaagctaaattgcttctagttaccactaaatcatcaacatatagatagataagcacaggattataacctttgt |
270 |
Q |
| |
|
|||||||||| ||||| || | | |||| | || ||||||| ||||| |||||| |||| |||||||||| ||||||| | ||| || |||||| | |
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|
| T |
1831632 |
catttgtcttttgaat--ttttctgtctatgttatgttgcttccagttaacactaagtcattaacatatagacagataagtatcagatcattaccttttt |
1831535 |
T |
|
| Q |
271 |
tattctt--caaatacagaccatattcaactttgcattcgacaaa-ttcttgttcaattggaaagttgacaatctttttgttctaggctcttggagcttg |
367 |
Q |
| |
|
||||||| || | ||| |||||||||| ||||||||| || ||| || ||||| || | |||| ||||| ||| |||||||| | |||||||||||||| |
|
|
| T |
1831534 |
tattctttacacacacacaccatattcagctttgcatttgataaattttttgttgaactagaaacttgaccatccttttgttccatgctcttggagcttg |
1831435 |
T |
|
| Q |
368 |
ctttgatccataca |
381 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
1831434 |
cttcaatccataca |
1831421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 163 - 370
Target Start/End: Original strand, 11753468 - 11753673
Alignment:
| Q |
163 |
tctttcatcatttgtcttctgaattcttgtatctctaagctaaattgcttctagttaccactaaatcatcaacatatagatagataagcacaggattata |
262 |
Q |
| |
|
||||||||||| |||||| |||||| || |||||| || ||||||||||||||| ||||||| || ||||||||||||| |||||||||| || || |
|
|
| T |
11753468 |
tctttcatcatctgtcttttgaattattctatctc--aggtaaattgcttctagtgaccactagataatcaacatatagacagataagcaccatatcatt |
11753565 |
T |
|
| Q |
263 |
ac-ctttgttattcttcaaatacagaccatattcaactttgcattcgacaaattcttgttcaattggaaagttgacaatctttttgttctaggctcttgg |
361 |
Q |
| |
|
|| ||| || ||||| | ||| ||||||||||| ||||||| || |||||||||||||| | ||||||| ||||| |||| ||| |||||||| | |
|
|
| T |
11753566 |
acattttttttttcttttcagacacaccatattcaaacttgcatttgaaaaattcttgttcaactataaagttgtcaatcatttttttc-aggctctttg |
11753664 |
T |
|
| Q |
362 |
agcttgctt |
370 |
Q |
| |
|
| ||||||| |
|
|
| T |
11753665 |
aacttgctt |
11753673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 143
Target Start/End: Original strand, 15565897 - 15565937
Alignment:
| Q |
103 |
gtttcagtgaattctattccaaggaagtatggtaactttcc |
143 |
Q |
| |
|
|||||||||||||| || ||||||||||||| ||||||||| |
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|
| T |
15565897 |
gtttcagtgaattccataccaaggaagtatgttaactttcc |
15565937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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