View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9743_low_6 (Length: 411)

Name: NF9743_low_6
Description: NF9743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9743_low_6
NF9743_low_6
[»] chr8 (3 HSPs)
chr8 (1-393)||(4903791-4904183)
chr8 (186-301)||(1557359-1557474)
chr8 (325-361)||(12123866-12123902)
[»] chr7 (2 HSPs)
chr7 (69-393)||(22153441-22153766)
chr7 (69-393)||(22209356-22209681)
[»] chr4 (2 HSPs)
chr4 (188-241)||(38185265-38185318)
chr4 (191-385)||(53562243-53562433)
[»] chr3 (1 HSPs)
chr3 (257-291)||(43073753-43073787)


Alignment Details
Target: chr8 (Bit Score: 353; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Complemental strand, 4904183 - 4903791
Alignment:
Q  1 caactgaacccaaacagaaaaacacgtaacaaacagaccaactacaaacaatcctaaagaagcagcttagaagctaactgcctacaccagaaccgaaaac 100  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  4904183 caacagaacccaaacagaaaaacacctaacaaacagaccaactacaatcattcctaaagaagcagcttagaagctaactgcctacaccagaaccgaaaac 4904084  T
Q  101 cagcaccgcaacagactgttaagccagagaaacacgactacagaacaaccagaaggccaccaaacagccacacagccaaagaagccagcatcaccgcaac 200  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4904083 cagcaccgcaacagactgttaaaccagagaaacacgactacagaacaaccagaaggccaccaaacagccacacagccaaagaagccagcatcaccgcaac 4903984  T
Q  201 aaacaatccttcggattccaattccactcataaaacaaacacgcgtatgaattcaacctacccaaaaaccacctccaagacaacaccttaacagattcca 300  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  4903983 aaacaatccttcagattccaattccactcataaaacaaaaacgcgtacgaattcaacctacccaaaaaccatctccaagacaacaccttaacagattcca 4903884  T
Q  301 acaactcctccacatctgtcacaacattgttgaaaattctgtcattcctcgctttccaaatactccaaattgcagcatgccaaattaatctac 393  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4903883 acagctcctccacatctgtcacaacattgttgaaaattctgtcattcctcgctttccaaatactccaaattgcagcatgccaaattaatctac 4903791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 186 - 301
Target Start/End: Complemental strand, 1557474 - 1557359
Alignment:
Q  186 cagcatcaccgcaacaaacaatccttcggattccaattccactcataaaacaaacacgcgtatgaattcaacctacccaaaaaccacctccaagacaaca 285  Q
    |||| ||| ||||||| ||||| |||||||||||||||||| || ||||||||||| ||     |  |||| ||||||||| |||||||||| ||||| |    
T  1557474 cagcctcaacgcaacagacaattcttcggattccaattccattcgtaaaacaaacaagctggcaagctcaatctacccaaacaccacctccacgacaata 1557375  T
Q  286 ccttaacagattccaa 301  Q
    ||||||  ||||||||    
T  1557374 ccttaattgattccaa 1557359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 361
Target Start/End: Original strand, 12123866 - 12123902
Alignment:
Q  325 cattgttgaaaattctgtcattcctcgctttccaaat 361  Q
    |||| |||||||||||||||||||| |||||||||||    
T  12123866 cattattgaaaattctgtcattcctagctttccaaat 12123902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 69 - 393
Target Start/End: Original strand, 22153441 - 22153766
Alignment:
Q  69 agaagctaactgcctacaccagaaccgaaaaccagcaccgcaacagactgtta-agccagagaaacacgactacagaacaaccagaaggccaccaaacag 167  Q
    ||||||||||||| ||||||| ||| ||||||||||||| ||| ||||||||| | |||||||||| ||||| || |||||||||||||| |||||||||    
T  22153441 agaagctaactgcatacaccataactgaaaaccagcaccacaatagactgttataaccagagaaacgcgactgcataacaaccagaaggcgaccaaacag 22153540  T
Q  168 ccacacagccaaagaagccagcatcaccgcaacaaacaatccttcggattccaattccactcataaaacaaacacgcgtatgaattcaacctacccaaaa 267  Q
    || |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  22153541 ccgcacaaccaaagaagccagcatcaccgcaacaaacaaaccttcggattccaattccactcataaaacaaacacgcgtgcgaattcaacctacccaaaa 22153640  T
Q  268 accacctccaagacaacaccttaacagattccaacaactcctccacatctgtcacaacattgttgaaaattctgtcattcctcgctttccaaatactcca 367  Q
    | |||||||||||||||||||||| ||||||||||| || ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  22153641 atcacctccaagacaacaccttaaaagattccaacagcttctccacatctgtcacaatattgttgaaaattatgtcattcctcgctttccaaatactcca 22153740  T
Q  368 aattgcagcatgccaaattaatctac 393  Q
    |||||| |||||||||||||||||||    
T  22153741 aattgcggcatgccaaattaatctac 22153766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 69 - 393
Target Start/End: Original strand, 22209356 - 22209681
Alignment:
Q  69 agaagctaactgcctacaccagaaccgaaaaccagcaccgcaacagactgtta-agccagagaaacacgactacagaacaaccagaaggccaccaaacag 167  Q
    ||||||||||||| ||||||| ||| ||||||||||||| ||| ||||||||| | |||||||||| ||||| || |||||||||||||| |||||||||    
T  22209356 agaagctaactgcatacaccataactgaaaaccagcaccacaatagactgttataaccagagaaacgcgactgcataacaaccagaaggcgaccaaacag 22209455  T
Q  168 ccacacagccaaagaagccagcatcaccgcaacaaacaatccttcggattccaattccactcataaaacaaacacgcgtatgaattcaacctacccaaaa 267  Q
    || |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  22209456 ccgcacaaccaaagaagccagcatcaccgcaacaaacaaaccttcggattccaattccactcataaaacaaacacgcgtgcgaattcaacctacccaaaa 22209555  T
Q  268 accacctccaagacaacaccttaacagattccaacaactcctccacatctgtcacaacattgttgaaaattctgtcattcctcgctttccaaatactcca 367  Q
    | |||||||||||||||||||||| ||||||||||| || ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  22209556 atcacctccaagacaacaccttaaaagattccaacagcttctccacatctgtcacaatattgttgaaaattatgtcattcctcgctttccaaatactcca 22209655  T
Q  368 aattgcagcatgccaaattaatctac 393  Q
    |||||| |||||||||||||||||||    
T  22209656 aattgcggcatgccaaattaatctac 22209681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 188 - 241
Target Start/End: Original strand, 38185265 - 38185318
Alignment:
Q  188 gcatcaccgcaacaaacaatccttcggattccaattccactcataaaacaaaca 241  Q
    ||||||||||||||| || ||||||||||||||||||||||| |||||||||||    
T  38185265 gcatcaccgcaacaagcattccttcggattccaattccactcgtaaaacaaaca 38185318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 191 - 385
Target Start/End: Complemental strand, 53562433 - 53562243
Alignment:
Q  191 tcaccgcaacaaacaatccttcggattccaattccactcataaaacaaacacgcgtatgaattcaacctacccaaaaaccacctccaagacaacacctta 290  Q
    |||||||| |||||| ||||| |||||||| |||||||| || |||||| ||||     | || || || ||||||  ||||||||||||||| |||||     
T  53562433 tcaccgcatcaaacagtccttgggattccacttccactcgtagaacaaaaacgccggcaactttaatcttcccaaactccacctccaagacaaaaccttg 53562334  T
Q  291 acagattccaacaactcctccacatctgtcacaacattgttgaaaattctgtcattcctcgctttccaaatactccaaattgcagcatgccaaat 385  Q
    || |    |||||  ||||| || ||  | ||| |||| |||||||||||||| |||||||||||||| |||||||||||  |||||||||||||    
T  53562333 actg----caacagatcctcaacctcaataacagcattattgaaaattctgtcgttcctcgctttccatatactccaaataacagcatgccaaat 53562243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 291
Target Start/End: Original strand, 43073753 - 43073787
Alignment:
Q  257 cctacccaaaaaccacctccaagacaacaccttaa 291  Q
    ||||||||| |||||||||||||||||||||||||    
T  43073753 cctacccaacaaccacctccaagacaacaccttaa 43073787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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