View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9743_low_8 (Length: 396)
Name: NF9743_low_8
Description: NF9743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9743_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 4787415 - 4787705
Alignment:
| Q |
1 |
catggggaatggagggttatatgcatatcaaaaggaacactaataaagagtatggggtgtgtgcaatcaatgaatgggcatataatccagtcaaatataa |
100 |
Q |
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| T |
4787415 |
catggggaatggagggttatatgcatatcaaaaggaacactaataaagagtatggggtgtgtgcaatcaatgaatgggcatataatccagtcaaatataa |
4787514 |
T |
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| Q |
101 |
ttgaacgaagcattagttccattttatagatcaagaataaattacggtttaatgcttctaggttttgtttgtgtgggtaatcttgatgttgttttgaaat |
200 |
Q |
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| T |
4787515 |
ttgaacgaagcattagttccattttatagatcaagaataaattacggtttaatgcttctaggttttgtttgtgtgggtaatcttgatgttgttttgaaat |
4787614 |
T |
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| Q |
201 |
gttagattccctattcaaatttgtaagcatatataaataaataaatcaatggaacgatatatgttgggctttggaatcatcattagtacca |
291 |
Q |
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| T |
4787615 |
gttagattccctattctaatttgtaagcatatataaataaataaatcaatggaacgatatatgttgggctttggaatcatcattagtacca |
4787705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 4782669 - 4782769
Alignment:
| Q |
1 |
catggggaatggagggttatatgcatatcaaaaggaacactaataaagagtatggggtgtgtgcaatcaatgaatgggcatataatccagtcaaatataa |
100 |
Q |
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| T |
4782669 |
catggggaatggagggttatatgcatatcaaaaggaacacaaataaaaagtatggggtgtgtgctataaattcatgggcttataatccagtcaaatataa |
4782768 |
T |
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| Q |
101 |
t |
101 |
Q |
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| T |
4782769 |
t |
4782769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 307 - 379
Target Start/End: Original strand, 4788833 - 4788905
Alignment:
| Q |
307 |
aactgcttttaactgtcatggtgactgaggttcacagtaattagtttgctataaccgttggagctagatagct |
379 |
Q |
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| T |
4788833 |
aactgcttttaactgtcatggtgactgaggttcacagtaattagtttgctataaccgttggagctagatagct |
4788905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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