View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9743_low_9 (Length: 386)
Name: NF9743_low_9
Description: NF9743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9743_low_9 |
 | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 20 - 370
Target Start/End: Complemental strand, 18150827 - 18150477
Alignment:
| Q |
20 |
ataaagtttacaaatcgttttcagatataattgagggcaaagagggaagatttcgagagactctgcttggaaaacgagttgattattcggggcgttctgt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18150827 |
ataaagtttacaaatcgttttcagatataattgagggcaaagagggaagatttcgagagactctgcttggaaaacgagttgattattcggggcgttctgt |
18150728 |
T |
|
| Q |
120 |
tattgtcgtaggtccatcactttcattacatcgatgtggattgccccgcgaaatagcaatagagctatttcagacatttctaattcgtggtttaattcga |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18150727 |
tattgtcgtaggtccatcactttcattacatcgatgtggattgccccgcgaaatagcaatagagctatttcagacatttctaattcgtggtttaattcga |
18150628 |
T |
|
| Q |
220 |
aaacattttgcttcgaacataggagttgctaagagtaaaatacgggaaaaagaaccgattgtatgggaaatacttcaagaagttatgagggggcatccag |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
18150627 |
aaacattttgcttcgaacataggagttgctaagagtaaaatacgggaaaaagaaccgattgtatgggaaatacttcaagaagttatgcgggggcatccag |
18150528 |
T |
|
| Q |
320 |
tattgctgaatagagcgcctactttgcatagattgggcatacaggcatttc |
370 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18150527 |
tattgctgaatagagcgcctactttgcatagattgggcatacaggcatttc |
18150477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 20 - 369
Target Start/End: Original strand, 1787083 - 1787428
Alignment:
| Q |
20 |
ataaagtttacaaatcgttttcagatataattgagggcaaagagggaagatttcgagagactctgcttggaaaacgagttgattattcggggcgttctgt |
119 |
Q |
| |
|
||||||||||||||| |||||| ||||| ||||||| ||| | ||||| |||| | ||| || |||||||||| ||||||||||| | | |||||||| |
|
|
| T |
1787083 |
ataaagtttacaaattattttcaaatatagttgagggtaaaaaaggaaggtttcaa-agaaactacttggaaaacaagttgattatt-gagacgttctgt |
1787180 |
T |
|
| Q |
120 |
tattgtcgtaggtccatcactttcattacatcgatgtggattgccccgcgaaatagcaatagagctatttcagacatttctaattcgtggtttaattcga |
219 |
Q |
| |
|
||||||||| |||||| || ||| |||||||||||||||||| ||| | |||||||||||||||||||| ||||||||||||| |||| |||||||||| |
|
|
| T |
1787181 |
tattgtcgttggtccaacaattttattacatcgatgtggattaccctacaaaatagcaatagagctattttagacatttctaat-cgtg-tttaattcga |
1787278 |
T |
|
| Q |
220 |
aaacattttgcttcgaacataggagttgctaagagtaaaatacgggaaaaagaaccgattgtatgggaaatacttcaagaagttatgagggggcatccag |
319 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1787279 |
aaacattttgcttcaaacataggagttgctaagagtaaaatacgggaaaaagaaccgattgtatgggaaatacttcaagaagttatgcgggggcatccag |
1787378 |
T |
|
| Q |
320 |
tattgctgaatagagcgcctactttgcatagattgggcatacaggcattt |
369 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |||||| |||||| |
|
|
| T |
1787379 |
tattgctgaatagagcgcctactttacatagattggacatacatgcattt |
1787428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 347; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 20 - 370
Target Start/End: Original strand, 28373563 - 28373913
Alignment:
| Q |
20 |
ataaagtttacaaatcgttttcagatataattgagggcaaagagggaagatttcgagagactctgcttggaaaacgagttgattattcggggcgttctgt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28373563 |
ataaagtttacaaatcgttttcagatataattgagggcaaagagggaagatttcgagagactctgcttggaaaacgagttgattattcggggcgttctgt |
28373662 |
T |
|
| Q |
120 |
tattgtcgtaggtccatcactttcattacatcgatgtggattgccccgcgaaatagcaatagagctatttcagacatttctaattcgtggtttaattcga |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28373663 |
tattgtcgtaggtccatcactttcattacatcgatgtggattgccccgcgaaatagcaatagagctatttcagacatttctaattcgtggtttaattcga |
28373762 |
T |
|
| Q |
220 |
aaacattttgcttcgaacataggagttgctaagagtaaaatacgggaaaaagaaccgattgtatgggaaatacttcaagaagttatgagggggcatccag |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
28373763 |
aaacattttgcttcgaacataggagttgctaagagtaaaatacgggaaaaagaaccgattgtatgggaaatacttcaagaagttatgcgggggcatccag |
28373862 |
T |
|
| Q |
320 |
tattgctgaatagagcgcctactttgcatagattgggcatacaggcatttc |
370 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28373863 |
tattgctgaatagagcgcctactttgcatagattgggcatacaggcatttc |
28373913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 20 - 370
Target Start/End: Original strand, 28381385 - 28381735
Alignment:
| Q |
20 |
ataaagtttacaaatcgttttcagatataattgagggcaaagagggaagatttcgagagactctgcttggaaaacgagttgattattcggggcgttctgt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28381385 |
ataaagtttacaaatcgttttcagatataattgagggcaaagagggaagatttcgagagactctgcttggaaaacgagttgattattcggggcgttctgt |
28381484 |
T |
|
| Q |
120 |
tattgtcgtaggtccatcactttcattacatcgatgtggattgccccgcgaaatagcaatagagctatttcagacatttctaattcgtggtttaattcga |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28381485 |
tattgtcgtaggtccatcactttcattacatcgatgtggattgccccgcgaaatagcaatagagctatttcagacatttctaattcgtggtttaattcga |
28381584 |
T |
|
| Q |
220 |
aaacattttgcttcgaacataggagttgctaagagtaaaatacgggaaaaagaaccgattgtatgggaaatacttcaagaagttatgagggggcatccag |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
28381585 |
aaacattttgcttcgaacataggagttgctaagagtaaaatacgggaaaaagaaccgattgtatgggaaatacttcaagaagttatgcgggggcatccag |
28381684 |
T |
|
| Q |
320 |
tattgctgaatagagcgcctactttgcatagattgggcatacaggcatttc |
370 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28381685 |
tattgctgaatagagcgcctactttgcatagattgggcatacaggcatttc |
28381735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 20 - 370
Target Start/End: Original strand, 16774651 - 16775001
Alignment:
| Q |
20 |
ataaagtttacaaatcgttttcagatataattgagggcaaagagggaagatttcgagagactctgcttggaaaacgagttgattattcggggcgttctgt |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
16774651 |
ataaagtttacaaatcgttttcagatataattgagggcaaaaagggaagatttcgagagactctacttggaaaacgagttgattattcggggcgttctgt |
16774750 |
T |
|
| Q |
120 |
tattgtcgtaggtccatcactttcattacatcgatgtggattgccccgcgaaatagcaatagagctatttcagacatttctaattcgtggtttaattcga |
219 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
16774751 |
tattgtcgttggtccatcactttcattacatcgatgtggattgccccgcgaaatagcaatagaactatttcagacatttctaattcgtggtttaattcga |
16774850 |
T |
|
| Q |
220 |
aaacattttgcttcgaacataggagttgctaagagtaaaatacgggaaaaagaaccgattgtatgggaaatacttcaagaagttatgagggggcatccag |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
16774851 |
aaacattttgcttcgaacataggagttgctaagagtaaaatacgggaaaaagaaccgattgtatgggaaatacttcaagaagttatgcgggggcatccag |
16774950 |
T |
|
| Q |
320 |
tattgctgaatagagcgcctactttgcatagattgggcatacaggcatttc |
370 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16774951 |
tattgctgaatagagcgcctactttgcatagattgggcatacaggcatttc |
16775001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 20 - 178
Target Start/End: Original strand, 15998244 - 15998402
Alignment:
| Q |
20 |
ataaagtttacaaatcgttttcagatataattgagggcaaagagggaagatttcgagagactctgcttggaaaacgagttgattattcggggcgttctgt |
119 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
15998244 |
ataatgtttacaaatcgttttcagatataattgagggcaaagagggaagatttcgagagactctgcttggaaaacgagttgattattcggggcgttttgt |
15998343 |
T |
|
| Q |
120 |
tattgtcgtaggtccatcactttcattacatcgatgtggattgccccgcgaaatagcaa |
178 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15998344 |
tattgtcgtaggtccatcactttcattacatcgatgtggattgccccgcgaaatagcaa |
15998402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 23 - 107
Target Start/End: Complemental strand, 31374655 - 31374571
Alignment:
| Q |
23 |
aagtttacaaatcgttttcagatataattgagggcaaagagggaagatttcgagagactctgcttggaaaacgagttgattattc |
107 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||| |||||||||||| |||||| ||| ||||||||| ||||||||||||| |
|
|
| T |
31374655 |
aagtttacaaactattttcagatataattgagtgcaaggagggaagattttgagagattctacttggaaaatgagttgattattc |
31374571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 170
Target Start/End: Complemental strand, 8677848 - 8677806
Alignment:
| Q |
128 |
taggtccatcactttcattacatcgatgtggattgccccgcga |
170 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
8677848 |
taggaccatcactttcattacatcgatgtgaattaccccgcga |
8677806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 20 - 370
Target Start/End: Original strand, 5581467 - 5581817
Alignment:
| Q |
20 |
ataaagtttacaaatcgttttcagatataattgagggcaaagagggaagatttcgagagactctgcttggaaaacgagttgattattcggggcgttctgt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5581467 |
ataaagtttacaaatcgttttcagatataattgagggcaaagagggaagatttcgagagactctgcttggaaaacgagttgattattcggggcgttctgt |
5581566 |
T |
|
| Q |
120 |
tattgtcgtaggtccatcactttcattacatcgatgtggattgccccgcgaaatagcaatagagctatttcagacatttctaattcgtggtttaattcga |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
5581567 |
tattgtcgtaggtccatcactttcattacatcgatgtggattgcccagcgaaatagcaatagagctattttagacatttctaattcgtggtttaattcga |
5581666 |
T |
|
| Q |
220 |
aaacattttgcttcgaacataggagttgctaagagtaaaatacgggaaaaagaaccgattgtatgggaaatacttcaagaagttatgagggggcatccag |
319 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
5581667 |
aaacactttgcttcgaacataggagttgctaagagtaaaatacgggaaaaagaaccgattgtatgggaaatacttcaagaagttatgcgggggcatccag |
5581766 |
T |
|
| Q |
320 |
tattgctgaatagagcgcctactttgcatagattgggcatacaggcatttc |
370 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5581767 |
tattgctgaatagagcgcctactttgcatagattgggcatacaggcatttc |
5581817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 64 - 226
Target Start/End: Complemental strand, 4480323 - 4480161
Alignment:
| Q |
64 |
ggaagatttcgagagactctgcttggaaaacgagttgattattcggggcgttctgttattgtcgtaggtccatcactttcattacatcgatgtggattgc |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
4480323 |
ggaagatttcgagagactctgcttggaaaacgagtttattattcggggtgttctgttattgtcgtaggttcatcactttcattacatcgatgtggtttgc |
4480224 |
T |
|
| Q |
164 |
cccgcgaaatagcaatagagctatttcagacatttctaattcgtggtttaattcgaaaacatt |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4480223 |
cccgcgaaatagcaatagagctatttcagacatttctaattcgtggtttaattcgaaaacatt |
4480161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 20 - 370
Target Start/End: Original strand, 224097 - 224447
Alignment:
| Q |
20 |
ataaagtttacaaatcgttttcagatataattgagggcaaagagggaagatttcgagagactctgcttggaaaacgagttgattattcggggcgttctgt |
119 |
Q |
| |
|
||||||| |||||||| |||||||| ||||||| || ||||||||||| ||||| |||||||||||||| ||||| || ||||| |||||||||||||| |
|
|
| T |
224097 |
ataaagtatacaaatcactttcagatgtaattgaaggtaaagagggaaggtttcgcgagactctgcttgggaaacgggtcgattactcggggcgttctgt |
224196 |
T |
|
| Q |
120 |
tattgtcgtaggtccatcactttcattacatcgatgtggattgccccgcgaaatagcaatagagctatttcagacatttctaattcgtggtttaattcga |
219 |
Q |
| |
|
||||| || ||||| || ||||||||||||| ||||||||| || | || ||||||||| |||| |||||| |||| ||||||| | |||||| |
|
|
| T |
224197 |
cattgttgtgggtccttcgctttcattacatcaatgtggattacctctagagatagcaataaagctttttcagctatttgtaattcgcgatttaatcacg |
224296 |
T |
|
| Q |
220 |
aaacattttgcttcgaacat-aggagttgctaagagtaaaatacgggaaaaagaaccgattgtatgggaaatacttcaagaagttatgagggggcatcca |
318 |
Q |
| |
|
|||| |||| || | |||| ||||||| || ||||| ||||||| ||||| |||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
224297 |
aaacgcgccacttctaatgtcagga-ttgctaaaaggaaaatttgggaaaaggaacccattgtatgggaaatacttcaagaagttatgcggggacatcct |
224395 |
T |
|
| Q |
319 |
gtattgctgaatagagcgcctactttgcatagattgggcatacaggcatttc |
370 |
Q |
| |
|
||| || | |||||||| |||||| |||||||||| ||||||||||| |||| |
|
|
| T |
224396 |
gtactgttaaatagagcacctactctgcatagattaggcatacaggcctttc |
224447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 8e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 123 - 217
Target Start/End: Original strand, 36596380 - 36596474
Alignment:
| Q |
123 |
tgtcgtaggtccatcactttcattacatcgatgtggattgccccgcgaaatagcaatagagctatttcagacatttctaattcgtggtttaattc |
217 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
36596380 |
tgtcgtaggtccaccactttcattacatcgatgtggattgccccgcgaaatagcaacatagctatttcagacaattctaattcgtggtttaattc |
36596474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 53 - 106
Target Start/End: Complemental strand, 735274 - 735221
Alignment:
| Q |
53 |
agggcaaagagggaagatttcgagagactctgcttggaaaacgagttgattatt |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
735274 |
agggcaaagagggaagatttcgagagactctgcttgaaaaacgagttgattatt |
735221 |
T |
|
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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 185 - 224
Target Start/End: Complemental strand, 31988540 - 31988501
Alignment:
| Q |
185 |
tatttcagacatttctaattcgtggtttaattcgaaaaca |
224 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
31988540 |
tatttcagacatttctaattcatggtttaattcgaaaaca |
31988501 |
T |
|
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